Wall clock time and date at job start Mon Mar 30 2020 05:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47112 * 60.00201 * 8 6 4 10 10 H 1.48503 * 109.47000 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46939 * 299.99464 * 8 6 4 12 12 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 13 13 C 1.46899 * 110.99825 * 183.95539 * 12 2 1 14 14 C 1.46899 * 111.00167 * 60.00559 * 12 2 1 15 15 C 1.52996 * 109.47221 * 189.99851 * 14 12 2 16 16 H 1.08999 * 109.50926 * 304.90530 * 15 14 12 17 17 C 1.53099 * 109.50450 * 184.77929 * 15 14 12 18 18 N 1.47020 * 109.25656 * 183.21392 * 17 15 14 19 19 C 1.46907 * 110.99926 * 182.39348 * 18 17 15 20 20 C 1.47012 * 110.75056 * 58.61855 * 18 17 15 21 21 C 1.53095 * 109.25899 * 301.38525 * 20 18 17 22 22 O 1.43011 * 109.50769 * 65.00180 * 15 14 12 23 23 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 24 24 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 26 26 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 27 27 H 1.08996 * 109.47534 * 60.00147 * 13 12 2 28 28 H 1.08998 * 109.47337 * 180.02562 * 13 12 2 29 29 H 1.09007 * 109.47493 * 300.00068 * 13 12 2 30 30 H 1.09005 * 109.46935 * 309.99882 * 14 12 2 31 31 H 1.09005 * 109.47207 * 69.99057 * 14 12 2 32 32 H 1.08998 * 109.50862 * 303.15084 * 17 15 14 33 33 H 1.09004 * 109.50872 * 63.28313 * 17 15 14 34 34 H 1.09006 * 109.46975 * 292.41470 * 19 18 17 35 35 H 1.09000 * 109.47150 * 52.40953 * 19 18 17 36 36 H 1.08998 * 109.46861 * 172.41426 * 19 18 17 37 37 H 1.08998 * 109.50488 * 181.44333 * 20 18 17 38 38 H 1.09001 * 109.50856 * 61.31734 * 20 18 17 39 39 H 1.09010 * 109.50240 * 296.91438 * 21 20 18 40 40 H 1.08998 * 109.50793 * 176.78809 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8063 -1.1210 4.0082 10 1 1.8270 -0.4199 5.2205 11 1 1.8257 -2.5202 4.0077 12 7 2.0196 -0.6926 -1.1994 13 6 3.4850 -0.7947 -1.1871 14 6 1.5487 -0.0265 -2.4211 15 6 1.8626 -0.9044 -3.6341 16 1 2.9277 -1.1357 -3.6502 17 6 1.4809 -0.1601 -4.9164 18 7 1.7125 -1.0372 -6.0733 19 6 1.4117 -0.3401 -7.3310 20 6 0.9263 -2.2738 -5.9553 21 6 1.3135 -2.9968 -4.6625 22 8 1.1113 -2.1186 -3.5521 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7090 1.1614 3.4844 27 1 3.8029 -1.3533 -0.3068 28 1 3.8209 -1.3110 -2.0863 29 1 3.9187 0.2050 -1.1592 30 1 0.4722 0.1324 -2.3564 31 1 2.0519 0.9345 -2.5280 32 1 0.4279 0.1184 -4.8758 33 1 2.0920 0.7374 -5.0119 34 1 0.3406 -0.1472 -7.3922 35 1 1.9533 0.6053 -7.3610 36 1 1.7177 -0.9611 -8.1728 37 1 1.1325 -2.9191 -6.8091 38 1 -0.1356 -2.0290 -5.9313 39 1 2.3627 -3.2890 -4.7092 40 1 0.6928 -3.8847 -4.5422 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082194084.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:49 Heat of formation + Delta-G solvation = -25.726161 kcal Electronic energy + Delta-G solvation = -18537.524773 eV Core-core repulsion = 15773.876467 eV Total energy + Delta-G solvation = -2763.648307 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.55064 -36.89766 -35.43123 -33.00392 -31.38108 -29.14305 -28.75552 -26.83109 -24.75773 -24.10605 -23.75471 -21.56833 -20.20218 -19.23057 -16.35632 -16.19820 -16.04497 -15.44569 -14.96462 -14.75838 -14.66363 -13.85818 -13.64273 -13.46883 -13.13410 -12.43850 -12.32717 -12.22990 -11.97686 -11.75055 -11.36217 -11.21139 -11.02919 -10.87249 -10.73389 -10.58030 -10.18114 -10.03515 -9.95155 -9.57904 -9.32278 -8.79789 -8.48735 -8.35647 -7.04572 -5.95120 -3.98933 3.36621 3.40403 3.43908 3.73483 4.05543 4.45587 4.77710 4.94460 4.98497 5.21524 5.25474 5.26210 5.36786 5.40376 5.49193 5.55922 5.65520 5.68759 5.81353 5.90826 5.94043 6.14507 6.26698 6.43491 6.48475 6.83516 6.83826 6.85326 6.93317 7.15091 7.23510 7.54695 7.59451 7.81854 7.89634 8.30020 8.39958 8.68588 9.07438 9.65584 11.11825 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.047444 B = 0.005130 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.031527 B = 5456.361630 C = 5596.482704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.212 3.788 3 H -0.004 1.004 4 C -0.501 4.501 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.527 5.527 13 C 0.036 3.964 14 C 0.058 3.942 15 C 0.100 3.900 16 H 0.065 0.935 17 C 0.022 3.978 18 N -0.543 5.543 19 C 0.025 3.975 20 C 0.017 3.983 21 C 0.061 3.939 22 O -0.356 6.356 23 H 0.007 0.993 24 H 0.036 0.964 25 H 0.083 0.917 26 H 0.260 0.740 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.009 0.991 30 H 0.081 0.919 31 H 0.035 0.965 32 H 0.043 0.957 33 H 0.083 0.917 34 H 0.025 0.975 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.041 0.959 39 H 0.054 0.946 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.820 -2.719 -16.611 16.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.107 3.893 3 H 0.014 0.986 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.252 5.252 13 C -0.112 4.112 14 C -0.071 4.071 15 C 0.042 3.958 16 H 0.083 0.917 17 C -0.106 4.106 18 N -0.268 5.268 19 C -0.123 4.123 20 C -0.111 4.111 21 C -0.017 4.017 22 O -0.274 6.274 23 H 0.026 0.974 24 H 0.055 0.945 25 H 0.102 0.898 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.028 0.972 30 H 0.100 0.900 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.913 -3.240 -16.292 16.636 hybrid contribution -0.090 0.727 0.477 0.874 sum 0.824 -2.513 -15.815 16.034 Atomic orbital electron populations 1.21835 0.97725 0.99777 0.99603 1.19246 0.92374 0.91782 0.85931 0.98630 1.21128 1.30876 1.12167 0.89749 0.91903 1.24931 0.95273 0.95104 0.98978 1.69893 1.37067 1.23103 1.23396 0.86582 0.79026 0.79801 0.82111 1.20393 1.21427 1.20218 1.62049 1.08947 1.52496 1.01676 1.22251 0.88999 0.98871 1.01087 1.22079 1.01873 0.93280 0.89901 1.22250 0.95639 0.85131 0.92794 0.91739 1.22850 1.00402 0.96363 0.91021 1.62208 1.56118 1.06040 1.02435 1.22374 0.99029 0.99162 0.91745 1.22840 0.95940 0.92494 0.99845 1.22595 1.01028 0.92938 0.85121 1.88201 1.67558 1.29524 1.42068 0.97443 0.94525 0.89793 0.93026 0.90615 0.93893 0.97239 0.90025 0.94731 0.93869 0.89890 0.95612 0.91322 0.91376 0.90103 0.94060 0.92756 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 8.76 37.16 0.33 -3.01 16 2 C 0.21 5.54 2.06 -68.86 -0.14 5.39 16 3 H 0.00 -0.11 8.14 -51.93 -0.42 -0.53 16 4 C -0.50 -14.02 7.93 -34.44 -0.27 -14.30 16 5 H 0.06 1.76 6.39 -52.49 -0.34 1.42 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.91 11.32 55.43 0.63 -25.28 16 8 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 12 N -0.53 -11.89 4.57 -236.28 -1.08 -12.97 16 13 C 0.04 0.75 9.05 60.06 0.54 1.29 16 14 C 0.06 1.10 4.44 -3.83 -0.02 1.08 16 15 C 0.10 1.65 2.76 -26.68 -0.07 1.57 16 16 H 0.06 1.08 6.27 -51.93 -0.33 0.75 16 17 C 0.02 0.30 4.94 -3.71 -0.02 0.28 16 18 N -0.54 -6.70 4.99 -242.58 -1.21 -7.91 16 19 C 0.03 0.24 9.63 60.07 0.58 0.82 16 20 C 0.02 0.20 5.66 -3.71 -0.02 0.18 16 21 C 0.06 0.80 7.01 37.21 0.26 1.06 16 22 O -0.36 -6.26 10.42 -35.23 -0.37 -6.62 16 23 H 0.01 0.15 6.20 -51.93 -0.32 -0.17 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.08 2.30 6.07 -51.93 -0.32 1.99 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.08 1.65 6.23 -51.93 -0.32 1.33 16 28 H 0.04 0.77 6.21 -51.93 -0.32 0.45 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.08 1.62 5.83 -51.93 -0.30 1.32 16 31 H 0.03 0.63 8.12 -51.93 -0.42 0.21 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.03 8.11 -51.93 -0.42 0.61 16 34 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 306.95 15.07 4.63 4.63 Total: -1.00 -30.19 306.95 -8.23 -38.41 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -6.87 Total: -2.82 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 1.07 Total: -4.08 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -1.66 Total: -46.16 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.37 Total: -6.62 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.19 -8.23 -38.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082194084.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.688 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds