Wall clock time and date at job start Mon Mar 30 2020 05:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47261 * 2 1 4 4 C 1.50706 * 109.47498 * 239.99642 * 2 1 3 5 5 H 1.07999 * 120.00241 * 240.00799 * 4 2 1 6 6 C 1.37878 * 119.99594 * 59.99757 * 4 2 1 7 7 N 1.31517 * 120.00335 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99683 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47256 * 60.00468 * 8 6 4 10 10 H 1.48498 * 109.46931 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.46917 * 300.00157 * 8 6 4 12 12 N 1.46907 * 109.47275 * 119.99976 * 2 1 3 13 13 C 1.46900 * 110.99891 * 58.94994 * 12 2 1 14 14 C 1.46897 * 110.99555 * 295.00153 * 12 2 1 15 15 C 1.53003 * 109.47285 * 189.99811 * 14 12 2 16 16 H 1.09002 * 109.50107 * 305.08514 * 15 14 12 17 17 C 1.53096 * 109.50984 * 185.00178 * 15 14 12 18 18 N 1.47016 * 109.25674 * 183.21818 * 17 15 14 19 19 C 1.46901 * 110.99718 * 182.39126 * 18 17 15 20 20 C 1.47014 * 110.75332 * 58.61053 * 18 17 15 21 21 C 1.53088 * 109.25980 * 301.38355 * 20 18 17 22 22 O 1.43013 * 109.50549 * 65.21063 * 15 14 12 23 23 H 1.08999 * 109.47261 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47225 * 300.00384 * 1 2 3 25 25 H 1.09000 * 109.47037 * 60.00455 * 1 2 3 26 26 H 0.96992 * 120.00307 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.47161 * 296.05012 * 13 12 2 28 28 H 1.09001 * 109.47025 * 56.04974 * 13 12 2 29 29 H 1.08995 * 109.47034 * 176.05097 * 13 12 2 30 30 H 1.08999 * 109.47623 * 69.99592 * 14 12 2 31 31 H 1.08999 * 109.47218 * 309.99770 * 14 12 2 32 32 H 1.08996 * 109.50969 * 63.27941 * 17 15 14 33 33 H 1.09004 * 109.53594 * 303.16986 * 17 15 14 34 34 H 1.09002 * 109.47401 * 59.99610 * 19 18 17 35 35 H 1.09001 * 109.46874 * 299.99623 * 19 18 17 36 36 H 1.09004 * 109.46970 * 179.97438 * 19 18 17 37 37 H 1.08998 * 109.50784 * 61.32235 * 20 18 17 38 38 H 1.09008 * 109.50189 * 181.44846 * 20 18 17 39 39 H 1.09000 * 109.51022 * 296.91908 * 21 20 18 40 40 H 1.09002 * 109.50981 * 176.78608 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6035 8 14 2.3214 -1.1206 -4.0079 9 1 1.8259 -2.5204 -4.0077 10 1 1.8270 -0.4202 -5.2204 11 1 3.8064 -1.1211 -4.0080 12 7 2.0197 -0.6925 1.1995 13 6 1.5282 -2.0761 1.2461 14 6 1.6486 0.0392 2.4180 15 6 2.3787 -0.5661 3.6187 16 1 2.1690 -1.6345 3.6713 17 6 1.8991 0.1129 4.9042 18 7 2.6588 -0.4179 6.0455 19 6 2.1894 0.1676 7.3084 20 6 4.0998 -0.1911 5.8629 21 6 4.5573 -0.8671 4.5678 22 8 3.7868 -0.3616 3.4741 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7095 1.1616 -3.4844 27 1 0.4418 -2.0730 1.3348 28 1 1.8166 -2.5950 0.3319 29 1 1.9616 -2.5868 2.1059 30 1 0.5722 -0.0344 2.5726 31 1 1.9297 1.0870 2.3124 32 1 0.8377 -0.0886 5.0481 33 1 2.0585 1.1886 4.8296 34 1 1.1350 -0.0701 7.4494 35 1 2.3169 1.2496 7.2766 36 1 2.7679 -0.2427 8.1362 37 1 4.2950 0.8796 5.8032 38 1 4.6447 -0.6146 6.7067 39 1 4.4116 -1.9443 4.6483 40 1 5.6127 -0.6536 4.3988 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082194086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:54 Heat of formation + Delta-G solvation = -26.877397 kcal Electronic energy + Delta-G solvation = -18527.416695 eV Core-core repulsion = 15763.718467 eV Total energy + Delta-G solvation = -2763.698228 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -39.55616 -37.07192 -35.45661 -32.97931 -31.43390 -29.01273 -28.37841 -26.60697 -25.09611 -24.36599 -23.94330 -21.61396 -20.21248 -19.06095 -16.25178 -16.21847 -15.97735 -15.46755 -14.99620 -14.74317 -14.64878 -13.98258 -13.67262 -13.32092 -13.14261 -12.52295 -12.36679 -12.26910 -11.98748 -11.59675 -11.43411 -11.09848 -10.98493 -10.81700 -10.67593 -10.63562 -10.49938 -10.23358 -9.95548 -9.60688 -9.32655 -8.80662 -8.48873 -8.32296 -7.02021 -5.94787 -3.97766 3.37361 3.41045 3.44647 3.73445 4.05447 4.46561 4.77789 4.94657 4.98420 5.20923 5.26931 5.28016 5.37220 5.39635 5.49482 5.56045 5.65556 5.68782 5.81389 5.90548 5.94170 6.15497 6.27542 6.43666 6.48499 6.72958 6.83359 6.83859 6.87633 6.96295 7.17955 7.50343 7.60636 7.77666 7.90438 8.21202 8.46224 8.68407 9.08037 9.66762 11.12559 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.045184 B = 0.005186 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.537240 B = 5397.417283 C = 5685.313844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.211 3.789 3 H 0.039 0.961 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.525 5.525 13 C 0.033 3.967 14 C 0.063 3.937 15 C 0.100 3.900 16 H 0.065 0.935 17 C 0.023 3.977 18 N -0.543 5.543 19 C 0.025 3.975 20 C 0.017 3.983 21 C 0.061 3.939 22 O -0.356 6.356 23 H 0.030 0.970 24 H 0.006 0.994 25 H 0.088 0.912 26 H 0.260 0.740 27 H 0.014 0.986 28 H 0.074 0.926 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.068 0.932 35 H 0.025 0.975 36 H 0.067 0.933 37 H 0.041 0.959 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.192 -1.848 16.603 16.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.105 3.895 3 H 0.057 0.943 4 C -0.535 4.535 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.202 1.202 12 N -0.248 5.248 13 C -0.116 4.116 14 C -0.066 4.066 15 C 0.041 3.959 16 H 0.083 0.917 17 C -0.106 4.106 18 N -0.268 5.268 19 C -0.123 4.123 20 C -0.111 4.111 21 C -0.017 4.017 22 O -0.274 6.274 23 H 0.049 0.951 24 H 0.025 0.975 25 H 0.106 0.894 26 H 0.070 0.930 27 H 0.032 0.968 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.635 -2.154 16.280 16.631 hybrid contribution -0.649 0.414 -0.474 0.904 sum 1.985 -1.740 15.806 16.025 Atomic orbital electron populations 1.22412 1.01014 0.99301 1.00432 1.19315 0.89548 0.94627 0.86054 0.94332 1.21094 1.30361 1.12408 0.89671 0.91961 1.24924 0.95294 0.95156 0.98954 1.69875 1.37229 1.23108 1.23392 0.86584 0.79259 0.79561 0.82126 1.20413 1.21468 1.20236 1.62261 1.59323 1.01640 1.01596 1.22277 0.96445 0.91509 1.01326 1.21985 0.95627 0.98867 0.90144 1.22260 0.81750 0.99129 0.92729 0.91705 1.22844 0.98658 0.97929 0.91177 1.62203 1.03660 1.58406 1.02539 1.22371 1.01281 0.97070 0.91581 1.22840 0.88921 0.99665 0.99715 1.22594 0.95923 0.97724 0.85437 1.88201 1.17034 1.80669 1.41522 0.95116 0.97508 0.89373 0.93043 0.96762 0.90690 0.94017 0.94196 0.90930 0.89895 0.93862 0.91274 0.95621 0.91420 0.94071 0.90098 0.92749 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 8.28 37.15 0.31 -3.91 16 2 C 0.21 5.43 2.34 -68.86 -0.16 5.27 16 3 H 0.04 1.10 8.03 -51.93 -0.42 0.68 16 4 C -0.50 -13.86 7.88 -34.44 -0.27 -14.13 16 5 H 0.06 1.74 6.77 -52.49 -0.36 1.39 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.86 11.32 55.43 0.63 -25.23 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.65 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.53 -11.74 4.69 -236.28 -1.11 -12.85 16 13 C 0.03 0.67 8.56 60.06 0.51 1.18 16 14 C 0.06 1.19 4.07 -3.82 -0.02 1.18 16 15 C 0.10 1.63 2.76 -26.68 -0.07 1.56 16 16 H 0.07 1.08 6.33 -51.93 -0.33 0.75 16 17 C 0.02 0.31 4.95 -3.71 -0.02 0.29 16 18 N -0.54 -6.69 4.99 -242.59 -1.21 -7.90 16 19 C 0.03 0.24 9.60 60.07 0.58 0.82 16 20 C 0.02 0.19 5.66 -3.72 -0.02 0.17 16 21 C 0.06 0.80 7.01 37.20 0.26 1.06 16 22 O -0.36 -6.26 10.42 -35.23 -0.37 -6.63 16 23 H 0.03 0.72 6.47 -51.93 -0.34 0.39 16 24 H 0.01 0.13 6.75 -51.93 -0.35 -0.22 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.01 0.28 6.51 -51.93 -0.34 -0.06 16 28 H 0.07 1.63 6.41 -51.93 -0.33 1.30 16 29 H 0.04 0.75 6.37 -51.93 -0.33 0.42 16 30 H 0.04 0.72 6.94 -51.93 -0.36 0.36 16 31 H 0.07 1.42 8.00 -51.93 -0.42 1.01 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 304.93 15.07 4.60 4.60 Total: -1.00 -29.89 304.93 -8.30 -38.19 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -6.82 Total: -1.84 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 1.00 Total: -5.00 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: -1.69 Total: -45.98 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.37 Total: -6.63 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.89 -8.30 -38.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082194086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.314 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds