Wall clock time and date at job start Mon Mar 30 2020 05:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47261 * 2 1 4 4 C 1.50706 * 109.47498 * 239.99642 * 2 1 3 5 5 H 1.07999 * 120.00241 * 240.00799 * 4 2 1 6 6 C 1.37878 * 119.99594 * 59.99757 * 4 2 1 7 7 N 1.31517 * 120.00335 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99683 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47256 * 60.00468 * 8 6 4 10 10 H 1.48498 * 109.46931 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.46917 * 300.00157 * 8 6 4 12 12 N 1.46907 * 109.47275 * 119.99976 * 2 1 3 13 13 C 1.46900 * 110.99891 * 58.94994 * 12 2 1 14 14 C 1.46897 * 110.99555 * 295.00153 * 12 2 1 15 15 C 1.53003 * 109.47285 * 189.99811 * 14 12 2 16 16 H 1.09002 * 109.50107 * 305.08514 * 15 14 12 17 17 C 1.53096 * 109.50984 * 185.00178 * 15 14 12 18 18 N 1.47016 * 109.25674 * 183.21818 * 17 15 14 19 19 C 1.46901 * 110.99718 * 182.39126 * 18 17 15 20 20 C 1.47014 * 110.75332 * 58.61053 * 18 17 15 21 21 C 1.53088 * 109.25980 * 301.38355 * 20 18 17 22 22 O 1.43013 * 109.50549 * 65.21063 * 15 14 12 23 23 H 1.08999 * 109.47261 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47225 * 300.00384 * 1 2 3 25 25 H 1.09000 * 109.47037 * 60.00455 * 1 2 3 26 26 H 0.96992 * 120.00307 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.47161 * 296.05012 * 13 12 2 28 28 H 1.09001 * 109.47025 * 56.04974 * 13 12 2 29 29 H 1.08995 * 109.47034 * 176.05097 * 13 12 2 30 30 H 1.08999 * 109.47623 * 69.99592 * 14 12 2 31 31 H 1.08999 * 109.47218 * 309.99770 * 14 12 2 32 32 H 1.08996 * 109.50969 * 63.27941 * 17 15 14 33 33 H 1.09004 * 109.53594 * 303.16986 * 17 15 14 34 34 H 1.09002 * 109.47401 * 59.99610 * 19 18 17 35 35 H 1.09001 * 109.46874 * 299.99623 * 19 18 17 36 36 H 1.09004 * 109.46970 * 179.97438 * 19 18 17 37 37 H 1.08998 * 109.50784 * 61.32235 * 20 18 17 38 38 H 1.09008 * 109.50189 * 181.44846 * 20 18 17 39 39 H 1.09000 * 109.51022 * 296.91908 * 21 20 18 40 40 H 1.09002 * 109.50981 * 176.78608 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6035 8 14 2.3214 -1.1206 -4.0079 9 1 1.8259 -2.5204 -4.0077 10 1 1.8270 -0.4202 -5.2204 11 1 3.8064 -1.1211 -4.0080 12 7 2.0197 -0.6925 1.1995 13 6 1.5282 -2.0761 1.2461 14 6 1.6486 0.0392 2.4180 15 6 2.3787 -0.5661 3.6187 16 1 2.1690 -1.6345 3.6713 17 6 1.8991 0.1129 4.9042 18 7 2.6588 -0.4179 6.0455 19 6 2.1894 0.1676 7.3084 20 6 4.0998 -0.1911 5.8629 21 6 4.5573 -0.8671 4.5678 22 8 3.7868 -0.3616 3.4741 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7095 1.1616 -3.4844 27 1 0.4418 -2.0730 1.3348 28 1 1.8166 -2.5950 0.3319 29 1 1.9616 -2.5868 2.1059 30 1 0.5722 -0.0344 2.5726 31 1 1.9297 1.0870 2.3124 32 1 0.8377 -0.0886 5.0481 33 1 2.0585 1.1886 4.8296 34 1 1.1350 -0.0701 7.4494 35 1 2.3169 1.2496 7.2766 36 1 2.7679 -0.2427 8.1362 37 1 4.2950 0.8796 5.8032 38 1 4.6447 -0.6146 6.7067 39 1 4.4116 -1.9443 4.6483 40 1 5.6127 -0.6536 4.3988 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082194086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:51 Heat of formation + Delta-G solvation = -49.082704 kcal Electronic energy + Delta-G solvation = -18528.379589 eV Core-core repulsion = 15763.718467 eV Total energy + Delta-G solvation = -2764.661122 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.71755 -38.76011 -36.55923 -34.89440 -32.88737 -30.50502 -29.73101 -28.06557 -27.15282 -25.79577 -24.98644 -23.05288 -21.33340 -20.89037 -18.22255 -17.43798 -17.30046 -16.85013 -16.41048 -15.94507 -15.93172 -15.53806 -15.16220 -14.73807 -14.58550 -14.27440 -13.62538 -13.37078 -13.22712 -13.00633 -12.88221 -12.77082 -12.61398 -12.50466 -12.36338 -12.19757 -12.08090 -11.98300 -11.75236 -11.23641 -10.85576 -10.49139 -10.47020 -9.42605 -8.77798 -8.08504 -6.19054 1.43959 1.46162 1.53545 2.44797 2.78078 2.90353 3.20534 3.40306 3.97354 4.00372 4.03525 4.07659 4.26681 4.44117 4.46454 4.58762 4.60925 4.62682 4.66901 4.68054 4.77811 4.81930 4.85539 4.91473 4.97282 4.98852 5.06781 5.16202 5.23566 5.56243 5.72976 5.80894 5.88711 5.98100 6.21356 6.38808 6.52268 6.79028 6.94279 7.49883 8.97735 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.045184 B = 0.005186 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.537240 B = 5397.417283 C = 5685.313844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.215 3.785 3 H 0.001 0.999 4 C -0.515 4.515 5 H 0.056 0.944 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.275 1.275 12 N -0.540 5.540 13 C 0.040 3.960 14 C 0.065 3.935 15 C 0.108 3.892 16 H 0.063 0.937 17 C 0.030 3.970 18 N -0.552 5.552 19 C 0.025 3.975 20 C 0.021 3.979 21 C 0.055 3.945 22 O -0.392 6.392 23 H 0.034 0.966 24 H 0.027 0.973 25 H 0.061 0.939 26 H 0.261 0.739 27 H 0.020 0.980 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.036 0.964 34 H 0.076 0.924 35 H 0.026 0.974 36 H 0.085 0.915 37 H 0.036 0.964 38 H 0.108 0.892 39 H 0.056 0.944 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.389 -2.824 18.076 18.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.108 3.892 3 H 0.019 0.981 4 C -0.553 4.553 5 H 0.074 0.926 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.785 3.215 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.200 1.200 12 N -0.264 5.264 13 C -0.108 4.108 14 C -0.064 4.064 15 C 0.049 3.951 16 H 0.081 0.919 17 C -0.099 4.099 18 N -0.277 5.277 19 C -0.123 4.123 20 C -0.107 4.107 21 C -0.022 4.022 22 O -0.311 6.311 23 H 0.053 0.947 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.045 0.955 36 H 0.103 0.897 37 H 0.054 0.946 38 H 0.126 0.874 39 H 0.075 0.925 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.835 -3.137 17.784 18.280 hybrid contribution -0.667 0.729 -0.860 1.309 sum 2.168 -2.409 16.924 17.232 Atomic orbital electron populations 1.22191 1.00083 0.99301 1.00079 1.19062 0.90134 0.92738 0.87269 0.98133 1.21355 1.30549 1.12441 0.90955 0.92623 1.25694 0.95414 0.95831 1.01812 1.70007 1.37970 1.24187 1.24017 0.85588 0.78616 0.78739 0.78527 1.19501 1.20940 1.20025 1.62134 1.59919 1.02594 1.01714 1.22218 0.96857 0.90288 1.01439 1.22004 0.96688 0.97856 0.89802 1.22095 0.81429 0.98872 0.92686 0.91893 1.22697 0.99491 0.97141 0.90552 1.62228 1.03869 1.58717 1.02933 1.22449 1.02076 0.97137 0.90608 1.22837 0.88900 0.99343 0.99656 1.22828 0.96239 0.97924 0.85231 1.88141 1.17726 1.81321 1.43869 0.94741 0.95440 0.92038 0.93004 0.96186 0.92576 0.91540 0.93139 0.92512 0.88600 0.94552 0.90485 0.95514 0.89674 0.94561 0.87424 0.92538 0.87291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.74 8.28 71.98 0.60 -7.14 16 2 C 0.22 11.33 2.34 44.17 0.10 11.44 16 3 H 0.00 0.04 8.03 -2.39 -0.02 0.03 16 4 C -0.51 -29.17 7.88 25.60 0.20 -28.97 16 5 H 0.06 3.16 6.77 -2.91 -0.02 3.14 16 6 C 0.01 0.60 5.30 84.65 0.45 1.05 16 7 N -0.92 -54.00 11.32 21.45 0.24 -53.76 16 8 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 12 N -0.54 -24.29 4.69 -901.46 -4.23 -28.52 16 13 C 0.04 1.60 8.56 127.69 1.09 2.70 16 14 C 0.07 2.45 4.07 86.30 0.35 2.80 16 15 C 0.11 3.40 2.76 30.63 0.08 3.48 16 16 H 0.06 2.00 6.33 -2.39 -0.02 1.98 16 17 C 0.03 0.76 4.95 86.31 0.43 1.19 16 18 N -0.55 -12.19 4.99 -921.43 -4.59 -16.79 16 19 C 0.02 0.40 9.60 127.69 1.23 1.63 16 20 C 0.02 0.43 5.66 86.31 0.49 0.91 16 21 C 0.05 1.35 7.01 72.01 0.50 1.86 16 22 O -0.39 -13.52 10.42 -148.98 -1.55 -15.07 16 23 H 0.03 1.62 6.47 -2.39 -0.02 1.61 16 24 H 0.03 1.19 6.75 -2.39 -0.02 1.17 16 25 H 0.06 3.37 6.07 -2.39 -0.01 3.35 16 26 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 27 H 0.02 0.76 6.51 -2.39 -0.02 0.75 16 28 H 0.06 2.43 6.41 -2.39 -0.02 2.42 16 29 H 0.07 2.30 6.37 -2.39 -0.02 2.29 16 30 H 0.05 1.77 6.94 -2.39 -0.02 1.75 16 31 H 0.06 2.28 8.00 -2.39 -0.02 2.26 16 32 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -64.19 304.93 -1.59 -65.78 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.99 Total: 10.77 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 5.53 Total: -9.05 kcal Atomic # 7 Polarization: -90.49 SS G_CDS: -8.58 Total: -99.07 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -1.55 Total: -15.07 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -64.19 -1.59 -65.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082194086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.701 kcal (2) G-P(sol) polarization free energy of solvation -64.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds