Wall clock time and date at job start Mon Mar 30 2020 04:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.49645 * 2 1 4 4 C 1.53038 * 109.49740 * 239.93117 * 2 1 3 5 5 C 1.53042 * 109.53610 * 178.64940 * 4 2 1 6 6 H 1.08998 * 109.49871 * 301.38184 * 5 4 2 7 7 N 1.46905 * 109.49742 * 181.31668 * 5 4 2 8 8 C 1.46895 * 110.99890 * 154.99903 * 7 5 4 9 9 C 1.53002 * 109.46927 * 180.02562 * 8 7 5 10 10 C 1.53011 * 109.47195 * 180.02562 * 9 8 7 11 11 O 1.42897 * 109.46906 * 179.97438 * 10 9 8 12 12 C 1.53191 * 109.31236 * 61.36677 * 5 4 2 13 13 N 1.46922 * 108.77799 * 305.36450 * 12 5 4 14 14 C 1.36934 * 120.63339 * 233.59123 * 13 12 5 15 15 H 1.08001 * 120.00024 * 27.69103 * 14 13 12 16 16 C 1.38816 * 120.00124 * 207.69877 * 14 13 12 17 17 N 1.31613 * 119.99902 * 17.34723 * 16 14 13 18 18 Si 1.86803 * 119.99852 * 197.35427 * 16 14 13 19 19 H 1.48497 * 109.47272 * 89.99763 * 18 16 14 20 20 H 1.48497 * 109.46722 * 209.99518 * 18 16 14 21 21 H 1.48498 * 109.46875 * 329.99309 * 18 16 14 22 22 C 1.46931 * 118.73660 * 53.60618 * 13 12 5 23 23 H 1.09006 * 109.47001 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47338 * 300.06644 * 1 2 3 25 25 H 1.09003 * 109.47170 * 60.06875 * 1 2 3 26 26 H 1.09002 * 109.45895 * 58.62834 * 4 2 1 27 27 H 1.08996 * 109.46384 * 298.67045 * 4 2 1 28 28 H 1.00899 * 110.99664 * 31.04693 * 7 5 4 29 29 H 1.09003 * 109.47069 * 60.00688 * 8 7 5 30 30 H 1.09001 * 109.47552 * 300.00316 * 8 7 5 31 31 H 1.08997 * 109.47412 * 60.00554 * 9 8 7 32 32 H 1.09004 * 109.47092 * 299.99911 * 9 8 7 33 33 H 1.08997 * 109.46669 * 59.99877 * 10 9 8 34 34 H 1.08995 * 109.46639 * 299.99882 * 10 9 8 35 35 H 0.96700 * 113.99666 * 180.02562 * 11 10 9 36 36 H 1.08998 * 109.58723 * 65.15155 * 12 5 4 37 37 H 1.09000 * 109.58688 * 185.57361 * 12 5 4 38 38 H 0.96997 * 119.99995 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.58447 * 186.60750 * 22 13 12 40 40 H 1.08993 * 109.58577 * 66.18316 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2485 5 6 3.5708 -0.6940 -1.2665 6 1 3.9154 0.3401 -1.2552 7 7 4.0595 -1.3604 -2.4811 8 6 5.3935 -0.8689 -2.8507 9 6 5.8675 -1.5841 -4.1176 10 6 7.2574 -1.0726 -4.5023 11 8 7.7002 -1.7410 -5.6851 12 6 4.1059 -1.4254 -0.0315 13 7 3.5053 -0.8283 1.1691 14 6 4.2943 -0.3780 2.1937 15 1 5.2994 -0.0381 1.9921 16 6 3.8023 -0.3587 3.4916 17 7 2.7391 -1.0693 3.8030 18 14 4.6491 0.6761 4.7961 19 1 4.0520 2.0357 4.8141 20 1 4.4706 0.0394 6.1257 21 1 6.0978 0.7757 4.4854 22 6 2.0419 -0.7236 1.2494 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5149 0.8894 25 1 -0.3634 0.5128 -0.8906 26 1 1.6576 -0.2244 -2.1389 27 1 1.6972 -1.7571 -1.2354 28 1 3.4081 -1.2462 -3.2431 29 1 6.0921 -1.0678 -2.0379 30 1 5.3471 0.2043 -3.0355 31 1 5.1690 -1.3849 -4.9302 32 1 5.9140 -2.6574 -3.9331 33 1 7.9557 -1.2721 -3.6895 34 1 7.2113 0.0006 -4.6866 35 1 8.5766 -1.4660 -5.9875 36 1 3.8387 -2.4807 -0.0874 37 1 5.1902 -1.3229 0.0127 38 1 2.3951 -1.0554 4.7098 39 1 1.7644 -0.1579 2.1389 40 1 1.6064 -1.7216 1.2979 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108140396.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:36 Heat of formation + Delta-G solvation = -46.500736 kcal Electronic energy + Delta-G solvation = -18081.497147 eV Core-core repulsion = 15316.947987 eV Total energy + Delta-G solvation = -2764.549160 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.35625 -37.26137 -35.41878 -33.38916 -32.05663 -30.71478 -28.18968 -25.86312 -25.30800 -24.17203 -21.85608 -21.26059 -20.15453 -18.93895 -17.48572 -16.70239 -15.98837 -15.06693 -14.89164 -14.59538 -14.14685 -13.97358 -13.47989 -13.31876 -13.02842 -12.75255 -12.33376 -11.89539 -11.69270 -11.53424 -11.26823 -11.12753 -10.99249 -10.95007 -10.70764 -10.53969 -10.21243 -10.11298 -10.00836 -9.79634 -9.54440 -9.39419 -8.46950 -8.10502 -6.63215 -5.75777 -3.17662 3.38937 3.45638 3.46934 3.89816 4.47279 4.64959 4.89867 5.13131 5.21671 5.34635 5.38217 5.48003 5.53506 5.57246 5.65093 5.73757 5.74598 5.93556 6.06384 6.13055 6.19704 6.26119 6.34013 6.43396 6.47358 6.63819 6.81562 6.83300 6.91678 7.01225 7.38040 7.43274 7.49200 7.69037 7.72026 7.82596 8.48803 9.24914 9.88755 10.45614 11.32739 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022021 B = 0.005726 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.189063 B = 4888.603882 C = 5918.376787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 H 0.060 0.940 4 C -0.103 4.103 5 C 0.071 3.929 6 H 0.039 0.961 7 N -0.684 5.684 8 C 0.064 3.936 9 C -0.117 4.117 10 C 0.076 3.924 11 O -0.576 6.576 12 C 0.162 3.838 13 N -0.594 5.594 14 C -0.251 4.251 15 H 0.064 0.936 16 C 0.003 3.997 17 N -0.901 5.901 18 Si 0.901 3.099 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.177 3.823 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.063 0.937 28 H 0.333 0.667 29 H 0.075 0.925 30 H 0.026 0.974 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.378 0.622 36 H 0.026 0.974 37 H 0.047 0.953 38 H 0.253 0.747 39 H 0.086 0.914 40 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.904 2.081 -13.944 14.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.138 4.138 3 H 0.078 0.922 4 C -0.141 4.141 5 C -0.040 4.040 6 H 0.057 0.943 7 N -0.316 5.316 8 C -0.066 4.066 9 C -0.155 4.155 10 C -0.002 4.002 11 O -0.382 6.382 12 C 0.035 3.965 13 N -0.316 5.316 14 C -0.381 4.381 15 H 0.082 0.918 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.731 3.269 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.052 3.948 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.151 0.849 29 H 0.094 0.906 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.224 0.776 36 H 0.044 0.956 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 2.510 1.211 -13.345 13.633 hybrid contribution 0.724 1.751 0.321 1.921 sum 3.234 2.961 -13.024 13.742 Atomic orbital electron populations 1.21710 0.96208 1.01161 1.00478 1.21814 0.94301 1.00068 0.97579 0.92193 1.21619 0.94358 1.00783 0.97319 1.22165 0.94885 0.96095 0.90842 0.94268 1.60449 1.03203 1.60998 1.06902 1.21840 0.92321 0.95838 0.96615 1.21480 0.94720 1.02062 0.97270 1.22154 0.96209 0.95165 0.86678 1.86474 1.38832 1.67886 1.44968 1.20791 0.95928 0.94582 0.85206 1.44064 1.01888 1.69738 1.15911 1.19179 0.97695 1.35363 0.85882 0.91810 1.25014 0.98571 0.99105 0.96905 1.70041 1.25665 1.40140 1.18745 0.86306 0.79149 0.80194 0.81238 1.21497 1.21742 1.20484 1.20832 0.82891 0.96945 0.94180 0.93085 0.92868 0.94028 0.93992 0.91853 0.84939 0.90622 0.95607 0.91675 0.90316 0.93370 0.93851 0.77596 0.95622 0.93418 0.93668 0.89537 0.96365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.20 37.16 0.34 -1.90 16 2 C -0.12 -2.25 2.87 -90.50 -0.26 -2.51 16 3 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.10 -1.77 4.45 -26.69 -0.12 -1.89 16 5 C 0.07 1.27 2.64 -67.59 -0.18 1.09 16 6 H 0.04 0.75 7.80 -51.93 -0.41 0.34 16 7 N -0.68 -10.31 6.31 -106.60 -0.67 -10.98 16 8 C 0.06 0.84 5.49 -3.83 -0.02 0.82 16 9 C -0.12 -1.37 5.84 -26.72 -0.16 -1.53 16 10 C 0.08 0.77 7.05 37.16 0.26 1.03 16 11 O -0.58 -5.99 13.66 -35.23 -0.48 -6.47 16 12 C 0.16 3.56 5.99 -3.71 -0.02 3.53 16 13 N -0.59 -15.18 2.99 -172.32 -0.52 -15.70 16 14 C -0.25 -7.00 9.59 -15.06 -0.14 -7.15 16 15 H 0.06 1.75 7.89 -52.49 -0.41 1.34 16 16 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 17 N -0.90 -26.39 11.19 55.49 0.62 -25.76 16 18 Si 0.90 21.83 29.59 -169.99 -5.03 16.80 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.18 4.28 4.60 -3.71 -0.02 4.26 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.63 8.10 -51.93 -0.42 0.21 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.33 4.45 8.33 -39.29 -0.33 4.12 16 29 H 0.08 1.08 7.57 -51.93 -0.39 0.69 16 30 H 0.03 0.33 8.06 -51.93 -0.42 -0.09 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.38 2.09 9.12 45.56 0.42 2.50 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.05 1.05 7.41 -51.93 -0.38 0.66 16 38 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 39 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 315.86 15.07 4.76 4.76 Total: -1.00 -30.68 315.86 -8.17 -38.85 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.45 Total: 2.75 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -0.40 Total: -4.24 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: -0.57 Total: -52.44 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.48 Total: -6.47 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.68 -8.17 -38.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108140396.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.655 kcal (2) G-P(sol) polarization free energy of solvation -30.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds