Wall clock time and date at job start Mon Mar 30 2020 04:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.49645 * 2 1 4 4 C 1.53038 * 109.49740 * 239.93117 * 2 1 3 5 5 C 1.53042 * 109.53610 * 178.64940 * 4 2 1 6 6 H 1.08998 * 109.49871 * 301.38184 * 5 4 2 7 7 N 1.46905 * 109.49742 * 181.31668 * 5 4 2 8 8 C 1.46895 * 110.99890 * 154.99903 * 7 5 4 9 9 C 1.53002 * 109.46927 * 180.02562 * 8 7 5 10 10 C 1.53011 * 109.47195 * 180.02562 * 9 8 7 11 11 O 1.42897 * 109.46906 * 179.97438 * 10 9 8 12 12 C 1.53191 * 109.31236 * 61.36677 * 5 4 2 13 13 N 1.46922 * 108.77799 * 305.36450 * 12 5 4 14 14 C 1.36934 * 120.63339 * 233.59123 * 13 12 5 15 15 H 1.08001 * 120.00024 * 27.69103 * 14 13 12 16 16 C 1.38816 * 120.00124 * 207.69877 * 14 13 12 17 17 N 1.31613 * 119.99902 * 17.34723 * 16 14 13 18 18 Si 1.86803 * 119.99852 * 197.35427 * 16 14 13 19 19 H 1.48497 * 109.47272 * 89.99763 * 18 16 14 20 20 H 1.48497 * 109.46722 * 209.99518 * 18 16 14 21 21 H 1.48498 * 109.46875 * 329.99309 * 18 16 14 22 22 C 1.46931 * 118.73660 * 53.60618 * 13 12 5 23 23 H 1.09006 * 109.47001 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47338 * 300.06644 * 1 2 3 25 25 H 1.09003 * 109.47170 * 60.06875 * 1 2 3 26 26 H 1.09002 * 109.45895 * 58.62834 * 4 2 1 27 27 H 1.08996 * 109.46384 * 298.67045 * 4 2 1 28 28 H 1.00899 * 110.99664 * 31.04693 * 7 5 4 29 29 H 1.09003 * 109.47069 * 60.00688 * 8 7 5 30 30 H 1.09001 * 109.47552 * 300.00316 * 8 7 5 31 31 H 1.08997 * 109.47412 * 60.00554 * 9 8 7 32 32 H 1.09004 * 109.47092 * 299.99911 * 9 8 7 33 33 H 1.08997 * 109.46669 * 59.99877 * 10 9 8 34 34 H 1.08995 * 109.46639 * 299.99882 * 10 9 8 35 35 H 0.96700 * 113.99666 * 180.02562 * 11 10 9 36 36 H 1.08998 * 109.58723 * 65.15155 * 12 5 4 37 37 H 1.09000 * 109.58688 * 185.57361 * 12 5 4 38 38 H 0.96997 * 119.99995 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.58447 * 186.60750 * 22 13 12 40 40 H 1.08993 * 109.58577 * 66.18316 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2485 5 6 3.5708 -0.6940 -1.2665 6 1 3.9154 0.3401 -1.2552 7 7 4.0595 -1.3604 -2.4811 8 6 5.3935 -0.8689 -2.8507 9 6 5.8675 -1.5841 -4.1176 10 6 7.2574 -1.0726 -4.5023 11 8 7.7002 -1.7410 -5.6851 12 6 4.1059 -1.4254 -0.0315 13 7 3.5053 -0.8283 1.1691 14 6 4.2943 -0.3780 2.1937 15 1 5.2994 -0.0381 1.9921 16 6 3.8023 -0.3587 3.4916 17 7 2.7391 -1.0693 3.8030 18 14 4.6491 0.6761 4.7961 19 1 4.0520 2.0357 4.8141 20 1 4.4706 0.0394 6.1257 21 1 6.0978 0.7757 4.4854 22 6 2.0419 -0.7236 1.2494 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5149 0.8894 25 1 -0.3634 0.5128 -0.8906 26 1 1.6576 -0.2244 -2.1389 27 1 1.6972 -1.7571 -1.2354 28 1 3.4081 -1.2462 -3.2431 29 1 6.0921 -1.0678 -2.0379 30 1 5.3471 0.2043 -3.0355 31 1 5.1690 -1.3849 -4.9302 32 1 5.9140 -2.6574 -3.9331 33 1 7.9557 -1.2721 -3.6895 34 1 7.2113 0.0006 -4.6866 35 1 8.5766 -1.4660 -5.9875 36 1 3.8387 -2.4807 -0.0874 37 1 5.1902 -1.3229 0.0127 38 1 2.3951 -1.0554 4.7098 39 1 1.7644 -0.1579 2.1389 40 1 1.6064 -1.7216 1.2979 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108140396.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:36 Heat of formation + Delta-G solvation = -69.471885 kcal Electronic energy + Delta-G solvation = -18082.493251 eV Core-core repulsion = 15316.947987 eV Total energy + Delta-G solvation = -2765.545264 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.90147 -38.16899 -36.73795 -35.18036 -33.40959 -32.50245 -29.54624 -27.49395 -27.24786 -25.22688 -23.65124 -22.30148 -21.68052 -20.58601 -18.70990 -18.27172 -17.14076 -16.77049 -16.02649 -15.98322 -15.81781 -15.53941 -15.02268 -14.54999 -14.51555 -14.17851 -13.84393 -13.35137 -13.18877 -12.96889 -12.81546 -12.72753 -12.50941 -12.25699 -12.17536 -12.02660 -11.91939 -11.80554 -11.48951 -11.21284 -11.09571 -10.87215 -10.55721 -9.38740 -8.68702 -7.88235 -5.34104 1.45553 1.46720 1.55900 2.48889 2.93548 3.25542 3.56017 3.82008 3.92580 4.03827 4.09552 4.19428 4.30994 4.36870 4.41591 4.52673 4.60252 4.67517 4.74674 4.77846 4.85802 4.93493 4.98605 5.06334 5.13981 5.17908 5.19795 5.31737 5.39574 5.42385 5.53889 5.66444 5.78553 6.09299 6.38983 6.56421 6.90532 7.14010 7.85215 8.37137 9.18051 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022021 B = 0.005726 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.189063 B = 4888.603882 C = 5918.376787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.109 4.109 3 H 0.053 0.947 4 C -0.096 4.096 5 C 0.087 3.913 6 H 0.033 0.967 7 N -0.687 5.687 8 C 0.067 3.933 9 C -0.110 4.110 10 C 0.078 3.922 11 O -0.595 6.595 12 C 0.162 3.838 13 N -0.612 5.612 14 C -0.266 4.266 15 H 0.063 0.937 16 C -0.048 4.048 17 N -0.933 5.933 18 Si 0.968 3.032 19 H -0.283 1.283 20 H -0.293 1.293 21 H -0.269 1.269 22 C 0.185 3.815 23 H 0.052 0.948 24 H 0.046 0.954 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.349 0.651 29 H 0.060 0.940 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.398 0.602 36 H 0.009 0.991 37 H 0.040 0.960 38 H 0.250 0.750 39 H 0.052 0.948 40 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.132 3.234 -15.803 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.129 4.129 3 H 0.072 0.928 4 C -0.134 4.134 5 C -0.024 4.024 6 H 0.051 0.949 7 N -0.319 5.319 8 C -0.063 4.063 9 C -0.148 4.148 10 C 0.000 4.000 11 O -0.403 6.403 12 C 0.036 3.964 13 N -0.336 5.336 14 C -0.396 4.396 15 H 0.081 0.919 16 C -0.244 4.244 17 N -0.579 5.579 18 Si 0.795 3.205 19 H -0.210 1.210 20 H -0.220 1.220 21 H -0.194 1.194 22 C 0.059 3.941 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.168 0.832 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.248 0.752 36 H 0.027 0.973 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges 2.758 2.368 -15.254 15.682 hybrid contribution 0.706 1.324 0.863 1.731 sum 3.465 3.692 -14.391 15.256 Atomic orbital electron populations 1.21658 0.93686 1.01741 1.01827 1.21647 0.96383 0.98965 0.95943 0.92818 1.21560 0.93582 1.00632 0.97601 1.21774 0.95384 0.95002 0.90250 0.94874 1.60293 1.04320 1.60804 1.06499 1.21819 0.90959 0.96631 0.96867 1.21371 0.96048 1.00896 0.96493 1.22102 0.95227 0.95839 0.86881 1.86412 1.40618 1.68376 1.44941 1.20846 0.95561 0.93994 0.86017 1.44344 1.02442 1.70190 1.16589 1.19492 0.98057 1.35210 0.86860 0.91903 1.25791 0.99479 1.00251 0.98886 1.70199 1.27203 1.41603 1.18926 0.85266 0.78587 0.78398 0.78209 1.21004 1.21989 1.19380 1.20657 0.82377 0.95513 0.95515 0.92909 0.93474 0.90729 0.90258 0.92324 0.83183 0.92130 0.94503 0.91085 0.91815 0.93067 0.92347 0.75212 0.97347 0.94159 0.94044 0.92948 0.99004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 9.20 71.98 0.66 -3.37 16 2 C -0.11 -4.08 2.87 -10.72 -0.03 -4.11 16 3 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 4 C -0.10 -3.10 4.45 30.62 0.14 -2.96 16 5 C 0.09 3.02 2.64 44.99 0.12 3.14 16 6 H 0.03 1.21 7.80 -2.39 -0.02 1.19 16 7 N -0.69 -19.40 6.31 -491.16 -3.10 -22.50 16 8 C 0.07 1.65 5.49 86.30 0.47 2.13 16 9 C -0.11 -2.37 5.84 30.60 0.18 -2.19 16 10 C 0.08 1.41 7.05 71.99 0.51 1.91 16 11 O -0.59 -11.10 13.66 -148.98 -2.03 -13.13 16 12 C 0.16 7.22 5.99 86.36 0.52 7.74 16 13 N -0.61 -32.11 2.99 -699.10 -2.09 -34.20 16 14 C -0.27 -15.13 9.59 84.03 0.81 -14.32 16 15 H 0.06 3.50 7.89 -2.91 -0.02 3.48 16 16 C -0.05 -2.77 4.91 84.86 0.42 -2.35 16 17 N -0.93 -56.35 11.19 21.65 0.24 -56.10 16 18 Si 0.97 45.51 29.59 68.60 2.03 47.54 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 C 0.18 9.17 4.60 86.36 0.40 9.57 16 23 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 24 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.08 2.04 8.10 -2.39 -0.02 2.02 16 27 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.35 8.25 8.33 -89.69 -0.75 7.50 16 29 H 0.06 1.69 7.57 -2.39 -0.02 1.67 16 30 H 0.04 0.85 8.06 -2.39 -0.02 0.84 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.40 3.50 9.12 -74.06 -0.68 2.83 16 36 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.04 1.80 7.41 -2.39 -0.02 1.79 16 38 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 39 H 0.05 2.93 6.04 -2.38 -0.01 2.92 16 40 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 Total: -1.00 -67.29 315.86 -1.19 -68.48 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -0.42 Total: 14.74 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 4.18 Total: -4.82 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -4.95 Total: -112.80 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -2.03 Total: -13.13 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -67.29 -1.19 -68.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108140396.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.993 kcal (2) G-P(sol) polarization free energy of solvation -67.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds