Wall clock time and date at job start Mon Mar 30 2020 04:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.50153 * 2 1 4 4 C 1.53036 * 109.49344 * 120.10245 * 2 1 3 5 5 C 1.53039 * 109.54385 * 58.58440 * 4 2 1 6 6 H 1.09002 * 109.49292 * 301.41402 * 5 4 2 7 7 N 1.46901 * 109.50037 * 181.31792 * 5 4 2 8 8 C 1.46898 * 110.99928 * 155.16406 * 7 5 4 9 9 C 1.53001 * 109.47218 * 179.97438 * 8 7 5 10 10 C 1.52993 * 109.47455 * 179.97438 * 9 8 7 11 11 O 1.42902 * 109.47518 * 179.97438 * 10 9 8 12 12 C 1.53188 * 109.31107 * 61.36350 * 5 4 2 13 13 N 1.46924 * 108.77794 * 305.36625 * 12 5 4 14 14 C 1.36933 * 120.63588 * 233.63460 * 13 12 5 15 15 H 1.08005 * 120.00323 * 27.66939 * 14 13 12 16 16 C 1.38810 * 120.00520 * 207.67386 * 14 13 12 17 17 N 1.31622 * 119.99938 * 17.35413 * 16 14 13 18 18 Si 1.86796 * 120.00412 * 197.35778 * 16 14 13 19 19 H 1.48499 * 109.47000 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47186 * 119.99897 * 18 16 14 21 21 H 1.48502 * 109.47344 * 239.99663 * 18 16 14 22 22 C 1.46927 * 118.73963 * 53.60836 * 13 12 5 23 23 H 1.08994 * 109.47680 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47296 * 300.06720 * 1 2 3 25 25 H 1.09008 * 109.47084 * 60.05975 * 1 2 3 26 26 H 1.09007 * 109.46016 * 178.60565 * 4 2 1 27 27 H 1.09008 * 109.46222 * 298.55801 * 4 2 1 28 28 H 1.00904 * 110.99581 * 279.11455 * 7 5 4 29 29 H 1.09003 * 109.46819 * 299.99149 * 8 7 5 30 30 H 1.08993 * 109.47578 * 59.99369 * 8 7 5 31 31 H 1.09004 * 109.46695 * 300.00133 * 9 8 7 32 32 H 1.09002 * 109.47158 * 59.99368 * 9 8 7 33 33 H 1.08997 * 109.47291 * 299.99823 * 10 9 8 34 34 H 1.09002 * 109.47141 * 59.99740 * 10 9 8 35 35 H 0.96689 * 114.00374 * 179.97438 * 11 10 9 36 36 H 1.09002 * 109.58851 * 185.58210 * 12 5 4 37 37 H 1.09001 * 109.59004 * 65.15874 * 12 5 4 38 38 H 0.96995 * 120.00764 * 180.02562 * 17 16 14 39 39 H 1.09006 * 109.58477 * 66.17619 * 22 13 12 40 40 H 1.08993 * 109.59217 * 186.60922 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0406 -0.7236 1.2481 5 6 1.5028 -2.1562 1.2653 6 1 0.4131 -2.1358 1.2534 7 7 1.9678 -2.8400 2.4795 8 6 1.0613 -3.9362 2.8462 9 6 1.5776 -4.6232 4.1121 10 6 0.6332 -5.7645 4.4944 11 8 1.1158 -6.4065 5.6764 12 6 2.0138 -2.9040 0.0299 13 7 1.6514 -2.1379 -1.1702 14 6 0.9630 -2.7304 -2.1949 15 1 0.3068 -3.5644 -1.9936 16 6 1.1083 -2.2595 -3.4926 17 7 2.1332 -1.4946 -3.8042 18 14 -0.1505 -2.7110 -4.7967 19 1 -1.1979 -3.5751 -4.1954 20 1 -0.7751 -1.4742 -5.3310 21 1 0.5209 -3.4431 -5.9005 22 6 2.0412 -0.7235 -1.2499 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5149 0.8894 25 1 -0.3634 0.5129 -0.8906 26 1 3.1304 -0.7449 1.2351 27 1 1.6987 -0.1965 2.1389 28 1 2.9129 -3.1748 2.3665 29 1 0.0640 -3.5367 3.0303 30 1 1.0182 -4.6598 2.0323 31 1 2.5749 -5.0226 3.9276 32 1 1.6210 -3.8997 4.9262 33 1 -0.3638 -5.3647 4.6790 34 1 0.5895 -6.4881 3.6804 35 1 0.5646 -7.1415 5.9777 36 1 1.5552 -3.8919 -0.0150 37 1 3.0977 -3.0045 0.0858 38 1 2.2347 -1.1652 -4.7108 39 1 3.1274 -0.6460 -1.2982 40 1 1.6006 -0.2724 -2.1389 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108140398.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:40 Heat of formation + Delta-G solvation = -43.797459 kcal Electronic energy + Delta-G solvation = -18304.072207 eV Core-core repulsion = 15539.640270 eV Total energy + Delta-G solvation = -2764.431937 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.54882 -37.28184 -35.40726 -33.26258 -31.85738 -30.61243 -28.03458 -26.04673 -25.24743 -24.16580 -21.61994 -21.36788 -21.12263 -18.26397 -17.45708 -16.63967 -15.92973 -15.18749 -14.97713 -14.60748 -13.86580 -13.71886 -13.37806 -13.20730 -13.12782 -12.81988 -12.50723 -12.29789 -11.49187 -11.30394 -11.24984 -11.11529 -11.01349 -10.84240 -10.67926 -10.42066 -10.13733 -10.11168 -10.06412 -9.85671 -9.50296 -9.42943 -8.52511 -8.06530 -6.63397 -5.78964 -3.21671 3.35441 3.43549 3.45258 3.91525 4.47194 4.66451 4.90235 5.14312 5.23885 5.33407 5.40208 5.52676 5.55279 5.62039 5.75131 5.76949 5.85414 6.00978 6.09581 6.14478 6.19564 6.26614 6.44423 6.51293 6.63341 6.64914 6.76676 6.87444 7.00803 7.14320 7.35889 7.41894 7.46453 7.67223 7.70670 7.79214 8.44262 9.20674 9.84050 10.40997 11.28691 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025717 B = 0.005660 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.492987 B = 4945.517670 C = 5605.988390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.119 4.119 3 H 0.056 0.944 4 C -0.089 4.089 5 C 0.067 3.933 6 H 0.077 0.923 7 N -0.686 5.686 8 C 0.062 3.938 9 C -0.118 4.118 10 C 0.076 3.924 11 O -0.577 6.577 12 C 0.124 3.876 13 N -0.585 5.585 14 C -0.251 4.251 15 H 0.063 0.937 16 C 0.004 3.996 17 N -0.901 5.901 18 Si 0.899 3.101 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.291 1.291 22 C 0.175 3.825 23 H 0.063 0.937 24 H 0.032 0.968 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.337 0.663 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.377 0.623 36 H 0.047 0.953 37 H 0.015 0.985 38 H 0.253 0.747 39 H 0.016 0.984 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.888 -3.596 13.048 13.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.139 4.139 3 H 0.074 0.926 4 C -0.127 4.127 5 C -0.044 4.044 6 H 0.096 0.904 7 N -0.316 5.316 8 C -0.067 4.067 9 C -0.156 4.156 10 C -0.002 4.002 11 O -0.382 6.382 12 C -0.004 4.004 13 N -0.308 5.308 14 C -0.381 4.381 15 H 0.081 0.919 16 C -0.195 4.195 17 N -0.545 5.545 18 Si 0.729 3.271 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.218 1.218 22 C 0.050 3.950 23 H 0.082 0.918 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.154 0.846 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.224 0.776 36 H 0.065 0.935 37 H 0.033 0.967 38 H 0.063 0.937 39 H 0.034 0.966 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.684 -2.633 13.238 13.762 hybrid contribution -0.796 -1.306 -1.463 2.117 sum -3.480 -3.939 11.775 12.895 Atomic orbital electron populations 1.21677 0.95835 1.02003 0.99276 1.21790 0.96109 0.98388 0.97644 0.92560 1.21351 0.99633 0.94578 0.97123 1.22219 0.99907 0.94487 0.87755 0.90447 1.60670 1.05510 1.28567 1.36883 1.21801 0.97169 0.92575 0.95190 1.21477 0.99191 0.96458 0.98426 1.22154 0.96841 0.94613 0.86588 1.86472 1.55195 1.51418 1.45085 1.21561 0.96342 0.94478 0.88061 1.43938 1.65204 1.05856 1.15810 1.19176 1.17870 1.15131 0.85881 0.91905 1.25007 0.97028 1.00542 0.96911 1.70046 1.27426 1.38382 1.18688 0.86272 0.81236 0.77765 0.81804 1.20322 1.21500 1.21758 1.20845 0.96106 0.83513 0.94579 0.91830 0.94912 0.93584 0.93017 0.93083 0.84588 0.91218 0.94979 0.91462 0.90581 0.93588 0.93654 0.77605 0.93465 0.96689 0.93692 0.96624 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.70 37.16 0.32 -2.11 16 2 C -0.12 -2.29 3.21 -90.50 -0.29 -2.58 16 3 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.09 -1.56 5.04 -26.69 -0.13 -1.70 16 5 C 0.07 1.18 2.27 -67.60 -0.15 1.02 16 6 H 0.08 1.44 5.99 -51.93 -0.31 1.13 16 7 N -0.69 -10.21 6.25 -106.60 -0.67 -10.88 16 8 C 0.06 0.82 5.49 -3.82 -0.02 0.79 16 9 C -0.12 -1.37 5.84 -26.73 -0.16 -1.52 16 10 C 0.08 0.77 7.05 37.15 0.26 1.03 16 11 O -0.58 -5.98 13.66 -35.23 -0.48 -6.47 16 12 C 0.12 2.58 5.77 -3.71 -0.02 2.56 16 13 N -0.59 -14.45 2.43 -172.32 -0.42 -14.87 16 14 C -0.25 -6.81 9.58 -15.06 -0.14 -6.96 16 15 H 0.06 1.69 7.89 -52.48 -0.41 1.28 16 16 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 17 N -0.90 -26.07 11.19 55.49 0.62 -25.45 16 18 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 C 0.18 4.17 4.70 -3.71 -0.02 4.15 16 23 H 0.06 1.28 5.97 -51.93 -0.31 0.97 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 26 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 27 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 28 H 0.34 4.84 8.42 -39.29 -0.33 4.51 16 29 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 30 H 0.03 0.44 7.56 -51.93 -0.39 0.05 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.38 2.08 9.12 45.56 0.42 2.50 16 36 H 0.05 0.98 7.40 -51.93 -0.38 0.60 16 37 H 0.02 0.33 8.04 -51.93 -0.42 -0.09 16 38 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 2.34 6.04 -51.93 -0.31 2.03 16 LS Contribution 311.22 15.07 4.69 4.69 Total: -1.00 -29.93 311.22 -7.96 -37.89 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.24 Total: 3.79 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -0.44 Total: -5.28 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.46 Total: -51.20 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.48 Total: -6.47 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.93 -7.96 -37.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108140398.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.903 kcal (2) G-P(sol) polarization free energy of solvation -29.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds