Wall clock time and date at job start Mon Mar 30 2020 04:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.50153 * 2 1 4 4 C 1.53036 * 109.49344 * 120.10245 * 2 1 3 5 5 C 1.53039 * 109.54385 * 58.58440 * 4 2 1 6 6 H 1.09002 * 109.49292 * 301.41402 * 5 4 2 7 7 N 1.46901 * 109.50037 * 181.31792 * 5 4 2 8 8 C 1.46898 * 110.99928 * 155.16406 * 7 5 4 9 9 C 1.53001 * 109.47218 * 179.97438 * 8 7 5 10 10 C 1.52993 * 109.47455 * 179.97438 * 9 8 7 11 11 O 1.42902 * 109.47518 * 179.97438 * 10 9 8 12 12 C 1.53188 * 109.31107 * 61.36350 * 5 4 2 13 13 N 1.46924 * 108.77794 * 305.36625 * 12 5 4 14 14 C 1.36933 * 120.63588 * 233.63460 * 13 12 5 15 15 H 1.08005 * 120.00323 * 27.66939 * 14 13 12 16 16 C 1.38810 * 120.00520 * 207.67386 * 14 13 12 17 17 N 1.31622 * 119.99938 * 17.35413 * 16 14 13 18 18 Si 1.86796 * 120.00412 * 197.35778 * 16 14 13 19 19 H 1.48499 * 109.47000 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47186 * 119.99897 * 18 16 14 21 21 H 1.48502 * 109.47344 * 239.99663 * 18 16 14 22 22 C 1.46927 * 118.73963 * 53.60836 * 13 12 5 23 23 H 1.08994 * 109.47680 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47296 * 300.06720 * 1 2 3 25 25 H 1.09008 * 109.47084 * 60.05975 * 1 2 3 26 26 H 1.09007 * 109.46016 * 178.60565 * 4 2 1 27 27 H 1.09008 * 109.46222 * 298.55801 * 4 2 1 28 28 H 1.00904 * 110.99581 * 279.11455 * 7 5 4 29 29 H 1.09003 * 109.46819 * 299.99149 * 8 7 5 30 30 H 1.08993 * 109.47578 * 59.99369 * 8 7 5 31 31 H 1.09004 * 109.46695 * 300.00133 * 9 8 7 32 32 H 1.09002 * 109.47158 * 59.99368 * 9 8 7 33 33 H 1.08997 * 109.47291 * 299.99823 * 10 9 8 34 34 H 1.09002 * 109.47141 * 59.99740 * 10 9 8 35 35 H 0.96689 * 114.00374 * 179.97438 * 11 10 9 36 36 H 1.09002 * 109.58851 * 185.58210 * 12 5 4 37 37 H 1.09001 * 109.59004 * 65.15874 * 12 5 4 38 38 H 0.96995 * 120.00764 * 180.02562 * 17 16 14 39 39 H 1.09006 * 109.58477 * 66.17619 * 22 13 12 40 40 H 1.08993 * 109.59217 * 186.60922 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0406 -0.7236 1.2481 5 6 1.5028 -2.1562 1.2653 6 1 0.4131 -2.1358 1.2534 7 7 1.9678 -2.8400 2.4795 8 6 1.0613 -3.9362 2.8462 9 6 1.5776 -4.6232 4.1121 10 6 0.6332 -5.7645 4.4944 11 8 1.1158 -6.4065 5.6764 12 6 2.0138 -2.9040 0.0299 13 7 1.6514 -2.1379 -1.1702 14 6 0.9630 -2.7304 -2.1949 15 1 0.3068 -3.5644 -1.9936 16 6 1.1083 -2.2595 -3.4926 17 7 2.1332 -1.4946 -3.8042 18 14 -0.1505 -2.7110 -4.7967 19 1 -1.1979 -3.5751 -4.1954 20 1 -0.7751 -1.4742 -5.3310 21 1 0.5209 -3.4431 -5.9005 22 6 2.0412 -0.7235 -1.2499 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5149 0.8894 25 1 -0.3634 0.5129 -0.8906 26 1 3.1304 -0.7449 1.2351 27 1 1.6987 -0.1965 2.1389 28 1 2.9129 -3.1748 2.3665 29 1 0.0640 -3.5367 3.0303 30 1 1.0182 -4.6598 2.0323 31 1 2.5749 -5.0226 3.9276 32 1 1.6210 -3.8997 4.9262 33 1 -0.3638 -5.3647 4.6790 34 1 0.5895 -6.4881 3.6804 35 1 0.5646 -7.1415 5.9777 36 1 1.5552 -3.8919 -0.0150 37 1 3.0977 -3.0045 0.0858 38 1 2.2347 -1.1652 -4.7108 39 1 3.1274 -0.6460 -1.2982 40 1 1.6006 -0.2724 -2.1389 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108140398.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:40 Heat of formation + Delta-G solvation = -65.584327 kcal Electronic energy + Delta-G solvation = -18305.016956 eV Core-core repulsion = 15539.640270 eV Total energy + Delta-G solvation = -2765.376686 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.09931 -38.16718 -36.70425 -35.05846 -33.16755 -32.42094 -29.38442 -27.72851 -27.14903 -25.23063 -23.46134 -22.66323 -22.31976 -19.88805 -18.56965 -18.22861 -16.98820 -16.91867 -16.22335 -16.14662 -15.49065 -15.01392 -14.90768 -14.76105 -14.53845 -14.26197 -13.98843 -13.68081 -13.03589 -12.92590 -12.79146 -12.55227 -12.34945 -12.25746 -12.14852 -12.01632 -11.93802 -11.76985 -11.50925 -11.21495 -11.01600 -10.86461 -10.55122 -9.44236 -8.61185 -7.86697 -5.33025 1.43905 1.46194 1.56031 2.49078 2.97699 3.26665 3.59428 3.80254 3.96930 4.05741 4.18933 4.23769 4.35183 4.36513 4.44546 4.50544 4.55419 4.66136 4.71622 4.78368 4.91092 4.98387 5.08000 5.09835 5.17915 5.18797 5.28625 5.30612 5.41326 5.52909 5.58411 5.69449 5.76553 6.11499 6.38636 6.47572 6.91200 7.14178 7.85089 8.37088 9.18119 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025717 B = 0.005660 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.492987 B = 4945.517670 C = 5605.988390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.112 4.112 3 H 0.073 0.927 4 C -0.083 4.083 5 C 0.085 3.915 6 H 0.073 0.927 7 N -0.680 5.680 8 C 0.065 3.935 9 C -0.111 4.111 10 C 0.078 3.922 11 O -0.595 6.595 12 C 0.124 3.876 13 N -0.601 5.601 14 C -0.258 4.258 15 H 0.062 0.938 16 C -0.047 4.047 17 N -0.934 5.934 18 Si 0.962 3.038 19 H -0.267 1.267 20 H -0.289 1.289 21 H -0.293 1.293 22 C 0.183 3.817 23 H 0.046 0.954 24 H 0.064 0.936 25 H 0.034 0.966 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.341 0.659 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.398 0.602 36 H 0.043 0.957 37 H 0.008 0.992 38 H 0.249 0.751 39 H -0.011 1.011 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.012 -3.899 14.732 15.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.133 4.133 3 H 0.091 0.909 4 C -0.121 4.121 5 C -0.027 4.027 6 H 0.091 0.909 7 N -0.310 5.310 8 C -0.065 4.065 9 C -0.149 4.149 10 C 0.000 4.000 11 O -0.404 6.404 12 C -0.004 4.004 13 N -0.324 5.324 14 C -0.388 4.388 15 H 0.080 0.920 16 C -0.243 4.243 17 N -0.580 5.580 18 Si 0.791 3.209 19 H -0.191 1.191 20 H -0.216 1.216 21 H -0.220 1.220 22 C 0.057 3.943 23 H 0.065 0.935 24 H 0.083 0.917 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.158 0.842 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.248 0.752 36 H 0.061 0.939 37 H 0.026 0.974 38 H 0.059 0.941 39 H 0.007 0.993 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.820 -2.965 14.967 15.729 hybrid contribution -0.405 -1.271 -1.935 2.350 sum -4.225 -4.236 13.032 14.340 Atomic orbital electron populations 1.21591 0.94963 1.01171 1.00281 1.21680 0.96737 0.98802 0.96033 0.90907 1.21298 0.99456 0.94443 0.96878 1.21910 0.99369 0.94376 0.87005 0.90871 1.60684 1.06057 1.29487 1.34755 1.21827 0.97065 0.91920 0.95665 1.21374 0.99327 0.96848 0.97325 1.22105 0.96791 0.94277 0.86866 1.86412 1.56340 1.52534 1.45114 1.21702 0.95895 0.94548 0.88213 1.44148 1.65252 1.06563 1.16427 1.19459 1.17748 1.14912 0.86728 0.91979 1.25725 0.98673 1.01039 0.98845 1.70194 1.29145 1.39862 1.18809 0.85286 0.79156 0.77384 0.79122 1.19142 1.21566 1.22022 1.20652 0.94275 0.83701 0.95672 0.93536 0.91731 0.94691 0.93256 0.90795 0.84150 0.90723 0.95571 0.92006 0.91096 0.92328 0.93032 0.75228 0.93851 0.97431 0.94140 0.99290 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.36 8.70 71.98 0.63 -3.73 16 2 C -0.11 -4.19 3.21 -10.72 -0.03 -4.22 16 3 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 4 C -0.08 -2.73 5.04 30.62 0.15 -2.58 16 5 C 0.08 2.83 2.27 44.99 0.10 2.94 16 6 H 0.07 2.57 5.99 -2.39 -0.01 2.56 16 7 N -0.68 -18.87 6.25 -491.18 -3.07 -21.94 16 8 C 0.06 1.56 5.49 86.30 0.47 2.03 16 9 C -0.11 -2.36 5.84 30.59 0.18 -2.18 16 10 C 0.08 1.39 7.05 71.98 0.51 1.89 16 11 O -0.60 -11.04 13.66 -148.98 -2.04 -13.08 16 12 C 0.12 5.14 5.77 86.36 0.50 5.63 16 13 N -0.60 -30.02 2.43 -699.10 -1.70 -31.72 16 14 C -0.26 -14.17 9.58 84.03 0.81 -13.37 16 15 H 0.06 3.35 7.89 -2.91 -0.02 3.33 16 16 C -0.05 -2.65 4.91 84.86 0.42 -2.23 16 17 N -0.93 -55.51 11.19 21.65 0.24 -55.27 16 18 Si 0.96 44.90 29.59 68.60 2.03 46.93 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 22 C 0.18 8.86 4.70 86.36 0.41 9.27 16 23 H 0.05 1.80 5.97 -2.39 -0.01 1.79 16 24 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 28 H 0.34 9.23 8.42 -89.69 -0.75 8.47 16 29 H 0.07 1.76 8.06 -2.39 -0.02 1.74 16 30 H 0.03 0.67 7.56 -2.39 -0.02 0.65 16 31 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.40 3.46 9.12 -74.06 -0.68 2.79 16 36 H 0.04 1.80 7.40 -2.39 -0.02 1.78 16 37 H 0.01 0.34 8.04 -2.39 -0.02 0.32 16 38 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 39 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 40 H 0.05 2.99 6.04 -2.39 -0.01 2.98 16 Total: -1.00 -64.24 311.22 -0.81 -65.05 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -0.41 Total: 16.57 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 4.13 Total: -6.54 kcal Atomic # 7 Polarization: -104.40 SS G_CDS: -4.53 Total: -108.93 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -2.04 Total: -13.08 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -64.24 -0.81 -65.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108140398.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.534 kcal (2) G-P(sol) polarization free energy of solvation -64.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds