Wall clock time and date at job start Mon Mar 30 2020 04:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.52042 * 2 1 4 4 C 1.53041 * 109.49533 * 120.07510 * 2 1 3 5 5 C 1.53038 * 109.53739 * 181.31954 * 4 2 1 6 6 H 1.08996 * 109.49817 * 58.61640 * 5 4 2 7 7 N 1.46902 * 109.49571 * 178.68815 * 5 4 2 8 8 C 1.46908 * 110.99420 * 204.99626 * 7 5 4 9 9 C 1.53001 * 109.46764 * 179.97438 * 8 7 5 10 10 C 1.53000 * 109.47198 * 180.02562 * 9 8 7 11 11 O 1.42897 * 109.47050 * 180.02562 * 10 9 8 12 12 C 1.53628 * 109.23864 * 298.51173 * 5 4 2 13 13 N 1.46918 * 108.54466 * 54.85941 * 12 5 4 14 14 C 1.36935 * 120.63514 * 126.36752 * 13 12 5 15 15 H 1.08002 * 120.00018 * 332.04745 * 14 13 12 16 16 C 1.38816 * 120.00322 * 152.04378 * 14 13 12 17 17 N 1.31621 * 119.99745 * 342.64284 * 16 14 13 18 18 Si 1.86797 * 119.99953 * 162.64790 * 16 14 13 19 19 H 1.48499 * 109.47051 * 180.02562 * 18 16 14 20 20 H 1.48506 * 109.46962 * 299.99499 * 18 16 14 21 21 H 1.48496 * 109.47448 * 59.99583 * 18 16 14 22 22 C 1.46928 * 118.73827 * 306.09308 * 13 12 5 23 23 H 1.08993 * 109.47114 * 180.08192 * 1 2 3 24 24 H 1.08999 * 109.46745 * 300.09067 * 1 2 3 25 25 H 1.08999 * 109.46717 * 60.08116 * 1 2 3 26 26 H 1.08997 * 109.46082 * 301.33969 * 4 2 1 27 27 H 1.08998 * 109.46110 * 61.29492 * 4 2 1 28 28 H 1.00896 * 111.00421 * 81.04678 * 7 5 4 29 29 H 1.08991 * 109.47095 * 299.99656 * 8 7 5 30 30 H 1.09006 * 109.46906 * 60.00060 * 8 7 5 31 31 H 1.09003 * 109.47357 * 300.00239 * 9 8 7 32 32 H 1.08996 * 109.47113 * 59.99947 * 9 8 7 33 33 H 1.09003 * 109.46964 * 300.00237 * 10 9 8 34 34 H 1.08996 * 109.47329 * 59.99837 * 10 9 8 35 35 H 0.96708 * 113.99697 * 179.97438 * 11 10 9 36 36 H 1.09003 * 109.74234 * 295.11885 * 12 5 4 37 37 H 1.08999 * 109.66549 * 174.55121 * 12 5 4 38 38 H 0.97001 * 119.99748 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.58917 * 173.65024 * 22 13 12 40 40 H 1.09004 * 109.58542 * 294.07172 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0408 -0.7230 1.2484 5 6 3.5708 -0.6949 1.2662 6 1 3.9159 0.3390 1.2547 7 7 4.0594 -1.3615 2.4806 8 6 5.3939 -0.8707 2.8499 9 6 5.8678 -1.5860 4.1166 10 6 7.2574 -1.0744 4.5017 11 8 7.7003 -1.7429 5.6844 12 6 4.1051 -1.4318 0.0285 13 7 3.5047 -0.8292 -1.1694 14 6 4.2936 -0.3794 -2.1943 15 1 5.2990 -0.0400 -1.9930 16 6 3.8013 -0.3598 -3.4921 17 7 2.7377 -1.0700 -3.8032 18 14 4.6484 0.6744 -4.7968 19 1 3.9325 0.5242 -6.0892 20 1 4.6318 2.1012 -4.3853 21 1 6.0536 0.2205 -4.9530 22 6 2.0414 -0.7238 -1.2495 23 1 -0.3633 -1.0276 0.0015 24 1 -0.3633 0.5152 0.8892 25 1 -0.3633 0.5126 -0.8907 26 1 1.6581 -0.2243 2.1389 27 1 1.6967 -1.7571 1.2355 28 1 4.0616 -2.3641 2.3668 29 1 6.0920 -1.0698 2.0370 30 1 5.3479 0.2026 3.0347 31 1 5.1695 -1.3865 4.9295 32 1 5.9136 -2.6593 3.9322 33 1 7.9560 -1.2735 3.6889 34 1 7.2112 -0.0012 4.6862 35 1 8.5766 -1.4677 5.9870 36 1 3.8339 -2.4861 0.0822 37 1 5.1896 -1.3332 -0.0173 38 1 2.3935 -1.0560 -4.7100 39 1 1.7639 -0.1580 -2.1388 40 1 1.6053 -1.7216 -1.2979 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108140402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:47 Heat of formation + Delta-G solvation = -47.840458 kcal Electronic energy + Delta-G solvation = -18087.880048 eV Core-core repulsion = 15323.272794 eV Total energy + Delta-G solvation = -2764.607255 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.36718 -37.25647 -35.40788 -33.38845 -32.09618 -30.67112 -28.16400 -25.82562 -25.26095 -24.17151 -21.64802 -21.34553 -20.46597 -18.99900 -17.48362 -16.70163 -15.93351 -15.07862 -14.89873 -14.58587 -14.02075 -13.82709 -13.53013 -13.35690 -13.05935 -12.69275 -12.38743 -11.85588 -11.71843 -11.55673 -11.23019 -11.10865 -11.00897 -10.98557 -10.73979 -10.47048 -10.21358 -10.11094 -10.03397 -9.90697 -9.57481 -9.45057 -8.53697 -8.07101 -6.64744 -5.79237 -3.22596 3.36808 3.42804 3.43916 3.91137 4.46875 4.65243 4.90163 5.13948 5.23557 5.32223 5.39848 5.53879 5.55053 5.58213 5.73738 5.75686 5.82808 5.88082 6.05471 6.13408 6.20734 6.26720 6.37229 6.46936 6.52330 6.59330 6.73835 6.79466 6.89733 7.01115 7.37070 7.43062 7.47781 7.68099 7.70692 7.78652 8.44102 9.20215 9.83395 10.40547 11.28215 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022035 B = 0.005727 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.397691 B = 4888.313105 C = 5911.233884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 H 0.060 0.940 4 C -0.088 4.088 5 C 0.069 3.931 6 H 0.072 0.928 7 N -0.686 5.686 8 C 0.062 3.938 9 C -0.118 4.118 10 C 0.076 3.924 11 O -0.577 6.577 12 C 0.124 3.876 13 N -0.590 5.590 14 C -0.256 4.256 15 H 0.063 0.937 16 C 0.004 3.996 17 N -0.901 5.901 18 Si 0.902 3.098 19 H -0.290 1.290 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.178 3.822 23 H 0.049 0.951 24 H 0.042 0.958 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.337 0.663 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.378 0.622 36 H 0.016 0.984 37 H 0.047 0.953 38 H 0.254 0.746 39 H 0.086 0.914 40 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.600 1.073 12.997 13.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.140 4.140 3 H 0.079 0.921 4 C -0.126 4.126 5 C -0.042 4.042 6 H 0.091 0.909 7 N -0.316 5.316 8 C -0.067 4.067 9 C -0.156 4.156 10 C -0.002 4.002 11 O -0.382 6.382 12 C -0.004 4.004 13 N -0.312 5.312 14 C -0.385 4.385 15 H 0.081 0.919 16 C -0.195 4.195 17 N -0.545 5.545 18 Si 0.732 3.268 19 H -0.216 1.216 20 H -0.210 1.210 21 H -0.209 1.209 22 C 0.052 3.948 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.155 0.845 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.224 0.776 36 H 0.034 0.966 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 2.619 1.190 13.174 13.484 hybrid contribution 1.552 0.344 -1.434 2.142 sum 4.171 1.534 11.739 12.552 Atomic orbital electron populations 1.21698 0.96254 1.01061 1.00484 1.21823 0.94283 1.00208 0.97663 0.92103 1.21384 0.94054 1.00083 0.97074 1.22257 0.95805 0.98358 0.87786 0.90934 1.60661 1.23919 1.10285 1.36729 1.21808 0.90204 0.99550 0.95189 1.21477 0.94895 1.00780 0.98398 1.22154 0.96049 0.95425 0.86572 1.86476 1.38850 1.67848 1.44995 1.21646 0.96416 0.94348 0.88012 1.44001 1.01992 1.69110 1.16087 1.19122 0.97762 1.35730 0.85914 0.91932 1.25032 0.98515 0.98982 0.96940 1.70035 1.25525 1.40039 1.18893 0.86380 0.78899 0.80591 0.80960 1.21556 1.20998 1.20923 1.20845 0.82566 0.96913 0.94476 0.93215 0.93871 0.93004 0.93078 0.92932 0.84534 0.94947 0.91204 0.90578 0.91458 0.93649 0.93583 0.77600 0.96583 0.93422 0.93552 0.89548 0.96529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.20 37.16 0.34 -1.92 16 2 C -0.12 -2.31 2.87 -90.50 -0.26 -2.57 16 3 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 4 C -0.09 -1.55 4.77 -26.69 -0.13 -1.68 16 5 C 0.07 1.23 2.63 -67.37 -0.18 1.05 16 6 H 0.07 1.38 7.80 -51.93 -0.41 0.97 16 7 N -0.69 -10.27 6.25 -106.35 -0.66 -10.93 16 8 C 0.06 0.82 5.49 -3.82 -0.02 0.80 16 9 C -0.12 -1.37 5.84 -26.73 -0.16 -1.53 16 10 C 0.08 0.77 7.05 37.16 0.26 1.03 16 11 O -0.58 -5.99 13.66 -35.23 -0.48 -6.47 16 12 C 0.12 2.62 5.79 -3.49 -0.02 2.60 16 13 N -0.59 -14.89 2.99 -172.06 -0.51 -15.40 16 14 C -0.26 -7.06 9.58 -15.06 -0.14 -7.20 16 15 H 0.06 1.70 7.89 -52.49 -0.41 1.29 16 16 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16 17 N -0.90 -26.20 11.19 55.49 0.62 -25.58 16 18 Si 0.90 21.70 29.59 -169.99 -5.03 16.67 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C 0.18 4.26 4.59 -3.71 -0.02 4.25 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.34 4.87 8.42 -39.29 -0.33 4.54 16 29 H 0.03 0.45 7.58 -51.93 -0.39 0.05 16 30 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.38 2.09 9.12 45.56 0.42 2.50 16 36 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 37 H 0.05 1.00 7.43 -51.93 -0.39 0.62 16 38 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.09 2.32 6.04 -51.93 -0.31 2.01 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 315.98 15.07 4.76 4.76 Total: -1.00 -30.34 315.98 -8.16 -38.50 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.45 Total: 3.61 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -0.40 Total: -5.15 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.56 Total: -51.92 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.48 Total: -6.47 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.34 -8.16 -38.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108140402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.340 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds