Wall clock time and date at job start Mon Mar 30 2020 04:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.52042 * 2 1 4 4 C 1.53041 * 109.49533 * 120.07510 * 2 1 3 5 5 C 1.53038 * 109.53739 * 181.31954 * 4 2 1 6 6 H 1.08996 * 109.49817 * 58.61640 * 5 4 2 7 7 N 1.46902 * 109.49571 * 178.68815 * 5 4 2 8 8 C 1.46908 * 110.99420 * 204.99626 * 7 5 4 9 9 C 1.53001 * 109.46764 * 179.97438 * 8 7 5 10 10 C 1.53000 * 109.47198 * 180.02562 * 9 8 7 11 11 O 1.42897 * 109.47050 * 180.02562 * 10 9 8 12 12 C 1.53628 * 109.23864 * 298.51173 * 5 4 2 13 13 N 1.46918 * 108.54466 * 54.85941 * 12 5 4 14 14 C 1.36935 * 120.63514 * 126.36752 * 13 12 5 15 15 H 1.08002 * 120.00018 * 332.04745 * 14 13 12 16 16 C 1.38816 * 120.00322 * 152.04378 * 14 13 12 17 17 N 1.31621 * 119.99745 * 342.64284 * 16 14 13 18 18 Si 1.86797 * 119.99953 * 162.64790 * 16 14 13 19 19 H 1.48499 * 109.47051 * 180.02562 * 18 16 14 20 20 H 1.48506 * 109.46962 * 299.99499 * 18 16 14 21 21 H 1.48496 * 109.47448 * 59.99583 * 18 16 14 22 22 C 1.46928 * 118.73827 * 306.09308 * 13 12 5 23 23 H 1.08993 * 109.47114 * 180.08192 * 1 2 3 24 24 H 1.08999 * 109.46745 * 300.09067 * 1 2 3 25 25 H 1.08999 * 109.46717 * 60.08116 * 1 2 3 26 26 H 1.08997 * 109.46082 * 301.33969 * 4 2 1 27 27 H 1.08998 * 109.46110 * 61.29492 * 4 2 1 28 28 H 1.00896 * 111.00421 * 81.04678 * 7 5 4 29 29 H 1.08991 * 109.47095 * 299.99656 * 8 7 5 30 30 H 1.09006 * 109.46906 * 60.00060 * 8 7 5 31 31 H 1.09003 * 109.47357 * 300.00239 * 9 8 7 32 32 H 1.08996 * 109.47113 * 59.99947 * 9 8 7 33 33 H 1.09003 * 109.46964 * 300.00237 * 10 9 8 34 34 H 1.08996 * 109.47329 * 59.99837 * 10 9 8 35 35 H 0.96708 * 113.99697 * 179.97438 * 11 10 9 36 36 H 1.09003 * 109.74234 * 295.11885 * 12 5 4 37 37 H 1.08999 * 109.66549 * 174.55121 * 12 5 4 38 38 H 0.97001 * 119.99748 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.58917 * 173.65024 * 22 13 12 40 40 H 1.09004 * 109.58542 * 294.07172 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0408 -0.7230 1.2484 5 6 3.5708 -0.6949 1.2662 6 1 3.9159 0.3390 1.2547 7 7 4.0594 -1.3615 2.4806 8 6 5.3939 -0.8707 2.8499 9 6 5.8678 -1.5860 4.1166 10 6 7.2574 -1.0744 4.5017 11 8 7.7003 -1.7429 5.6844 12 6 4.1051 -1.4318 0.0285 13 7 3.5047 -0.8292 -1.1694 14 6 4.2936 -0.3794 -2.1943 15 1 5.2990 -0.0400 -1.9930 16 6 3.8013 -0.3598 -3.4921 17 7 2.7377 -1.0700 -3.8032 18 14 4.6484 0.6744 -4.7968 19 1 3.9325 0.5242 -6.0892 20 1 4.6318 2.1012 -4.3853 21 1 6.0536 0.2205 -4.9530 22 6 2.0414 -0.7238 -1.2495 23 1 -0.3633 -1.0276 0.0015 24 1 -0.3633 0.5152 0.8892 25 1 -0.3633 0.5126 -0.8907 26 1 1.6581 -0.2243 2.1389 27 1 1.6967 -1.7571 1.2355 28 1 4.0616 -2.3641 2.3668 29 1 6.0920 -1.0698 2.0370 30 1 5.3479 0.2026 3.0347 31 1 5.1695 -1.3865 4.9295 32 1 5.9136 -2.6593 3.9322 33 1 7.9560 -1.2735 3.6889 34 1 7.2112 -0.0012 4.6862 35 1 8.5766 -1.4677 5.9870 36 1 3.8339 -2.4861 0.0822 37 1 5.1896 -1.3332 -0.0173 38 1 2.3935 -1.0560 -4.7100 39 1 1.7639 -0.1580 -2.1388 40 1 1.6053 -1.7216 -1.2979 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108140402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:47 Heat of formation + Delta-G solvation = -70.229038 kcal Electronic energy + Delta-G solvation = -18088.850890 eV Core-core repulsion = 15323.272794 eV Total energy + Delta-G solvation = -2765.578096 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.91357 -38.16183 -36.72233 -35.18825 -33.43521 -32.44785 -29.50220 -27.48373 -27.17652 -25.23434 -23.44127 -22.39120 -21.94902 -20.61722 -18.71393 -18.27308 -17.00735 -16.83953 -16.16130 -15.98577 -15.63805 -15.28841 -15.10769 -14.74061 -14.32635 -14.28500 -13.76457 -13.34740 -13.18278 -12.96362 -12.82469 -12.72317 -12.47583 -12.27287 -12.16473 -12.02127 -11.95614 -11.82413 -11.49266 -11.22165 -11.16389 -10.86873 -10.57405 -9.46842 -8.64524 -7.88704 -5.36367 1.44367 1.47139 1.53989 2.48070 2.95412 3.23844 3.57498 3.77934 3.95966 4.05602 4.17093 4.22864 4.28228 4.36617 4.41143 4.50925 4.54348 4.69193 4.72547 4.77916 4.91165 4.91404 4.98754 5.05630 5.14815 5.17198 5.21703 5.30309 5.40144 5.46467 5.53659 5.66815 5.79171 6.08923 6.36493 6.45962 6.90766 7.11727 7.82425 8.34507 9.15624 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022035 B = 0.005727 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.397691 B = 4888.313105 C = 5911.233884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.110 4.110 3 H 0.053 0.947 4 C -0.081 4.081 5 C 0.085 3.915 6 H 0.065 0.935 7 N -0.679 5.679 8 C 0.064 3.936 9 C -0.111 4.111 10 C 0.078 3.922 11 O -0.595 6.595 12 C 0.124 3.876 13 N -0.609 5.609 14 C -0.269 4.269 15 H 0.063 0.937 16 C -0.047 4.047 17 N -0.932 5.932 18 Si 0.967 3.033 19 H -0.292 1.292 20 H -0.277 1.277 21 H -0.275 1.275 22 C 0.186 3.814 23 H 0.051 0.949 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.051 0.949 28 H 0.342 0.658 29 H 0.026 0.974 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.398 0.602 36 H 0.010 0.990 37 H 0.043 0.957 38 H 0.251 0.749 39 H 0.052 0.948 40 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.113 1.853 14.558 15.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.131 4.131 3 H 0.072 0.928 4 C -0.119 4.119 5 C -0.026 4.026 6 H 0.083 0.917 7 N -0.309 5.309 8 C -0.065 4.065 9 C -0.149 4.149 10 C 0.000 4.000 11 O -0.404 6.404 12 C -0.003 4.003 13 N -0.332 5.332 14 C -0.400 4.400 15 H 0.081 0.919 16 C -0.243 4.243 17 N -0.578 5.578 18 Si 0.795 3.205 19 H -0.218 1.218 20 H -0.203 1.203 21 H -0.201 1.201 22 C 0.061 3.939 23 H 0.071 0.929 24 H 0.091 0.909 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.160 0.840 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.248 0.752 36 H 0.028 0.972 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges 3.160 1.970 14.779 15.240 hybrid contribution 1.447 0.048 -1.872 2.367 sum 4.607 2.018 12.906 13.852 Atomic orbital electron populations 1.21650 0.93868 1.01666 1.01713 1.21669 0.96275 0.99083 0.96078 0.92848 1.21325 0.93751 0.99993 0.96829 1.21952 0.95980 0.97527 0.87145 0.91685 1.60675 1.25195 1.10494 1.34488 1.21835 0.89012 0.99964 0.95707 1.21372 0.95934 1.00293 0.97257 1.22103 0.95110 0.95965 0.86861 1.86414 1.40643 1.68312 1.45010 1.21782 0.96179 0.94240 0.88097 1.44282 1.02435 1.69724 1.16799 1.19446 0.98100 1.35537 0.86869 0.91939 1.25796 0.99412 1.00156 0.98924 1.70191 1.27069 1.41525 1.19007 0.85355 0.78016 0.79077 0.78095 1.21792 1.20335 1.20116 1.20657 0.82240 0.95513 0.95530 0.92947 0.90928 0.93483 0.90790 0.93024 0.84036 0.95538 0.90780 0.91073 0.91946 0.93018 0.92349 0.75214 0.97188 0.93824 0.94003 0.92984 0.98963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 9.20 71.98 0.66 -3.46 16 2 C -0.11 -4.20 2.87 -10.72 -0.03 -4.23 16 3 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 4 C -0.08 -2.71 4.77 30.62 0.15 -2.57 16 5 C 0.09 2.93 2.63 45.14 0.12 3.05 16 6 H 0.06 2.37 7.80 -2.39 -0.02 2.35 16 7 N -0.68 -19.08 6.25 -490.39 -3.07 -22.15 16 8 C 0.06 1.57 5.49 86.30 0.47 2.05 16 9 C -0.11 -2.37 5.84 30.59 0.18 -2.19 16 10 C 0.08 1.40 7.05 71.98 0.51 1.91 16 11 O -0.60 -11.09 13.66 -148.98 -2.03 -13.12 16 12 C 0.12 5.26 5.79 86.51 0.50 5.76 16 13 N -0.61 -31.29 2.99 -698.27 -2.09 -33.38 16 14 C -0.27 -15.09 9.58 84.03 0.81 -14.29 16 15 H 0.06 3.42 7.89 -2.91 -0.02 3.40 16 16 C -0.05 -2.66 4.91 84.86 0.42 -2.24 16 17 N -0.93 -55.71 11.19 21.65 0.24 -55.47 16 18 Si 0.97 45.08 29.59 68.60 2.03 47.11 16 19 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 22 C 0.19 9.14 4.59 86.36 0.40 9.54 16 23 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 25 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.34 9.32 8.42 -89.70 -0.75 8.56 16 29 H 0.03 0.69 7.58 -2.39 -0.02 0.67 16 30 H 0.07 1.78 8.06 -2.38 -0.02 1.76 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.40 3.49 9.12 -74.05 -0.68 2.81 16 36 H 0.01 0.44 8.05 -2.39 -0.02 0.42 16 37 H 0.04 1.84 7.43 -2.39 -0.02 1.82 16 38 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 39 H 0.05 2.90 6.04 -2.39 -0.01 2.88 16 40 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 Total: -1.00 -65.33 315.98 -1.16 -66.49 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -0.42 Total: 17.19 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 4.18 Total: -6.68 kcal Atomic # 7 Polarization: -106.09 SS G_CDS: -4.91 Total: -111.00 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -2.03 Total: -13.12 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -65.33 -1.16 -66.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108140402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.738 kcal (2) G-P(sol) polarization free energy of solvation -65.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds