Wall clock time and date at job start Mon Mar 30 2020 05:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47093 * 2 1 4 4 C 1.50698 * 109.47422 * 120.00509 * 2 1 3 5 5 H 1.08008 * 119.99522 * 120.27256 * 4 2 1 6 6 C 1.37869 * 120.00168 * 299.99763 * 4 2 1 7 7 N 1.31517 * 120.00085 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00126 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47003 * 60.00469 * 8 6 4 10 10 H 1.48503 * 109.47069 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47376 * 300.00241 * 8 6 4 12 12 N 1.46899 * 109.46670 * 240.00632 * 2 1 3 13 13 C 1.47017 * 111.00301 * 306.04415 * 12 2 1 14 14 C 1.53095 * 109.25808 * 177.61139 * 13 12 2 15 15 O 1.43013 * 109.26410 * 56.84659 * 14 13 12 16 16 C 1.43011 * 113.73747 * 301.33212 * 15 14 13 17 17 H 1.09002 * 109.50959 * 298.73332 * 16 15 14 18 18 C 1.53000 * 109.50899 * 178.64760 * 16 15 14 19 19 N 1.46899 * 109.47061 * 60.57360 * 18 16 15 20 20 C 1.46897 * 110.99909 * 75.83085 * 19 18 16 21 21 C 1.46905 * 110.99849 * 199.78372 * 19 18 16 22 22 C 1.47016 * 111.00082 * 182.40911 * 12 2 1 23 23 H 1.08996 * 109.47217 * 59.99278 * 1 2 3 24 24 H 1.08998 * 109.46789 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46484 * 299.99046 * 1 2 3 26 26 H 0.96998 * 120.00267 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.50264 * 297.54502 * 13 12 2 28 28 H 1.08994 * 109.50370 * 57.67371 * 13 12 2 29 29 H 1.09005 * 109.50349 * 176.78408 * 14 13 12 30 30 H 1.08998 * 109.50468 * 296.90881 * 14 13 12 31 31 H 1.08997 * 109.47684 * 180.57932 * 18 16 15 32 32 H 1.09003 * 109.46766 * 300.57901 * 18 16 15 33 33 H 1.09006 * 109.47481 * 59.99827 * 20 19 18 34 34 H 1.08997 * 109.47443 * 179.97438 * 20 19 18 35 35 H 1.09002 * 109.47106 * 299.99921 * 20 19 18 36 36 H 1.08997 * 109.47189 * 64.92168 * 21 19 18 37 37 H 1.09006 * 109.46664 * 184.92212 * 21 19 18 38 38 H 1.09002 * 109.46818 * 304.91999 * 21 19 18 39 39 H 1.09006 * 109.50615 * 302.32988 * 22 12 2 40 40 H 1.09001 * 109.50603 * 62.45318 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6570 -1.5860 1.1311 6 6 1.6995 -0.2396 2.4826 7 7 0.9438 0.8300 2.6035 8 14 2.3216 -1.1207 4.0077 9 1 3.8067 -1.1212 4.0079 10 1 1.8273 -0.4203 5.2203 11 1 1.8261 -2.5206 4.0074 12 7 2.0196 -0.6924 -1.1995 13 6 1.4338 -2.0364 -1.3081 14 6 1.9230 -2.6977 -2.5993 15 8 3.3528 -2.7285 -2.6012 16 6 3.9567 -1.4363 -2.4974 17 1 3.6630 -0.8275 -3.3526 18 6 5.4793 -1.5842 -2.4744 19 7 5.9281 -2.2228 -3.7189 20 6 5.8955 -1.2733 -4.8393 21 6 7.2682 -2.8030 -3.5594 22 6 3.4881 -0.7622 -1.2051 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5137 0.8901 26 1 0.7092 1.1611 3.4845 27 1 1.7410 -2.6375 -0.4523 28 1 0.3467 -1.9591 -1.3280 29 1 1.5369 -3.7155 -2.6559 30 1 1.5702 -2.1257 -3.4575 31 1 5.9388 -0.5998 -2.3850 32 1 5.7717 -2.2003 -1.6241 33 1 6.5530 -0.4316 -4.6216 34 1 6.2328 -1.7717 -5.7480 35 1 4.8768 -0.9117 -4.9796 36 1 7.2290 -3.6133 -2.8314 37 1 7.6122 -3.1919 -4.5178 38 1 7.9578 -2.0342 -3.2106 39 1 3.9006 0.2452 -1.1498 40 1 3.8281 -1.3429 -0.3477 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111690704.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:58 Heat of formation + Delta-G solvation = -29.890142 kcal Electronic energy + Delta-G solvation = -18725.195203 eV Core-core repulsion = 15961.366333 eV Total energy + Delta-G solvation = -2763.828870 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.18105 -37.08908 -35.52231 -32.50248 -31.48067 -29.26235 -27.60044 -27.42067 -25.16666 -24.64424 -22.87677 -21.47717 -20.11385 -19.22199 -16.35517 -16.02317 -15.65666 -15.42386 -14.79838 -14.67170 -14.46523 -13.98452 -13.62037 -13.34888 -13.04334 -12.45858 -12.35494 -12.06231 -11.67839 -11.61002 -11.52388 -11.22965 -11.11539 -10.84070 -10.74592 -10.53575 -10.38230 -10.16578 -9.84081 -9.58144 -9.27788 -8.81632 -8.40958 -8.23780 -7.19287 -6.00947 -4.13965 3.27067 3.32107 3.35168 3.96885 4.26952 4.38408 4.95793 5.14517 5.23594 5.24383 5.38748 5.39128 5.55405 5.64391 5.68312 5.72500 5.84998 5.87579 5.90382 5.95351 6.01516 6.19354 6.23267 6.54935 6.69892 6.82602 6.89465 7.00686 7.07442 7.10236 7.13048 7.53851 7.68785 7.79439 7.91728 8.10737 8.28830 8.38974 8.94767 9.53732 10.99185 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027932 B = 0.006469 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.185935 B = 4327.204942 C = 4799.077135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.207 3.793 3 H 0.040 0.960 4 C -0.543 4.543 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.887 5.887 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.535 5.535 13 C 0.021 3.979 14 C 0.064 3.936 15 O -0.371 6.371 16 C 0.102 3.898 17 H 0.055 0.945 18 C 0.063 3.937 19 N -0.538 5.538 20 C 0.023 3.977 21 C 0.027 3.973 22 C 0.034 3.966 23 H 0.015 0.985 24 H 0.028 0.972 25 H 0.085 0.915 26 H 0.262 0.738 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.022 0.978 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.022 0.978 39 H 0.070 0.930 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.143 -4.135 -10.863 13.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.101 3.899 3 H 0.057 0.943 4 C -0.582 4.582 5 H 0.074 0.926 6 C -0.134 4.134 7 N -0.525 5.525 8 Si 0.716 3.284 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.260 5.260 13 C -0.107 4.107 14 C -0.014 4.014 15 O -0.290 6.290 16 C 0.043 3.957 17 H 0.073 0.927 18 C -0.065 4.065 19 N -0.261 5.261 20 C -0.125 4.125 21 C -0.122 4.122 22 C -0.096 4.096 23 H 0.034 0.966 24 H 0.047 0.953 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.041 0.959 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.040 0.960 39 H 0.088 0.912 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.689 -4.281 -11.251 13.772 hybrid contribution 0.929 0.020 1.955 2.165 sum 7.618 -4.261 -9.296 12.752 Atomic orbital electron populations 1.21848 0.97733 0.99198 1.00387 1.19287 0.92292 0.94097 0.84268 0.94265 1.21667 1.31793 1.13052 0.91690 0.92581 1.24900 0.94824 0.94809 0.98865 1.69867 1.36408 1.22689 1.23581 0.86723 0.79224 0.79905 0.82553 1.20352 1.21203 1.20302 1.62749 1.04744 1.16173 1.42329 1.22633 1.00192 0.91308 0.96609 1.22665 0.81347 1.00125 0.97217 1.87977 1.18732 1.27733 1.94514 1.22108 0.91328 0.84967 0.97294 0.92694 1.22155 0.94290 0.97899 0.92193 1.61868 1.24897 1.34517 1.04847 1.22439 1.01799 0.94178 0.94074 1.22377 0.88761 0.99044 1.02002 1.22489 0.90792 1.00289 0.96002 0.96627 0.95277 0.89678 0.92827 0.93668 0.90345 0.89708 0.93568 0.93184 0.90190 0.95942 0.91699 0.91189 0.91326 0.91712 0.95988 0.91162 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.54 37.16 0.32 -2.91 16 2 C 0.21 5.18 2.48 -68.87 -0.17 5.00 16 3 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.54 -14.61 7.12 -34.44 -0.25 -14.85 16 5 H 0.06 1.53 5.79 -52.48 -0.30 1.23 16 6 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 7 N -0.89 -24.97 11.32 55.43 0.63 -24.35 16 8 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.54 -11.61 4.77 -227.71 -1.09 -12.70 16 13 C 0.02 0.43 4.91 -3.71 -0.02 0.41 16 14 C 0.06 1.09 7.01 37.21 0.26 1.35 16 15 O -0.37 -6.84 10.34 -35.23 -0.36 -7.20 16 16 C 0.10 1.74 2.86 -26.68 -0.08 1.66 16 17 H 0.06 0.93 6.93 -51.93 -0.36 0.58 16 18 C 0.06 0.93 4.69 -3.82 -0.02 0.91 16 19 N -0.54 -7.29 4.83 -251.25 -1.21 -8.50 16 20 C 0.02 0.27 9.39 60.06 0.56 0.83 16 21 C 0.03 0.29 9.52 60.07 0.57 0.86 16 22 C 0.03 0.67 4.56 -3.71 -0.02 0.66 16 23 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.03 0.67 6.28 -51.93 -0.33 0.34 16 25 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.05 1.00 6.94 -51.93 -0.36 0.64 16 28 H 0.08 1.54 6.08 -51.93 -0.32 1.22 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.68 7.96 -51.93 -0.41 0.26 16 32 H 0.08 1.21 7.94 -51.93 -0.41 0.80 16 33 H 0.02 0.24 8.09 -51.93 -0.42 -0.18 16 34 H 0.06 0.65 8.06 -51.93 -0.42 0.23 16 35 H 0.07 0.84 6.88 -51.93 -0.36 0.48 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.62 8.04 -51.93 -0.42 0.20 16 38 H 0.02 0.22 8.13 -51.93 -0.42 -0.20 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.05 1.10 6.41 -51.93 -0.33 0.77 16 LS Contribution 305.25 15.07 4.60 4.60 Total: -1.00 -28.75 305.25 -8.23 -36.97 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.85 Total: -0.73 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 1.07 Total: -4.30 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: -1.67 Total: -45.55 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.36 Total: -7.20 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.75 -8.23 -36.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111690704.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.084 kcal (2) G-P(sol) polarization free energy of solvation -28.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds