Wall clock time and date at job start Mon Mar 30 2020 05:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47093 * 2 1 4 4 C 1.50698 * 109.47422 * 120.00509 * 2 1 3 5 5 H 1.08008 * 119.99522 * 120.27256 * 4 2 1 6 6 C 1.37869 * 120.00168 * 299.99763 * 4 2 1 7 7 N 1.31517 * 120.00085 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00126 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47003 * 60.00469 * 8 6 4 10 10 H 1.48503 * 109.47069 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47376 * 300.00241 * 8 6 4 12 12 N 1.46899 * 109.46670 * 240.00632 * 2 1 3 13 13 C 1.47017 * 111.00301 * 306.04415 * 12 2 1 14 14 C 1.53095 * 109.25808 * 177.61139 * 13 12 2 15 15 O 1.43013 * 109.26410 * 56.84659 * 14 13 12 16 16 C 1.43011 * 113.73747 * 301.33212 * 15 14 13 17 17 H 1.09002 * 109.50959 * 298.73332 * 16 15 14 18 18 C 1.53000 * 109.50899 * 178.64760 * 16 15 14 19 19 N 1.46899 * 109.47061 * 60.57360 * 18 16 15 20 20 C 1.46897 * 110.99909 * 75.83085 * 19 18 16 21 21 C 1.46905 * 110.99849 * 199.78372 * 19 18 16 22 22 C 1.47016 * 111.00082 * 182.40911 * 12 2 1 23 23 H 1.08996 * 109.47217 * 59.99278 * 1 2 3 24 24 H 1.08998 * 109.46789 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46484 * 299.99046 * 1 2 3 26 26 H 0.96998 * 120.00267 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.50264 * 297.54502 * 13 12 2 28 28 H 1.08994 * 109.50370 * 57.67371 * 13 12 2 29 29 H 1.09005 * 109.50349 * 176.78408 * 14 13 12 30 30 H 1.08998 * 109.50468 * 296.90881 * 14 13 12 31 31 H 1.08997 * 109.47684 * 180.57932 * 18 16 15 32 32 H 1.09003 * 109.46766 * 300.57901 * 18 16 15 33 33 H 1.09006 * 109.47481 * 59.99827 * 20 19 18 34 34 H 1.08997 * 109.47443 * 179.97438 * 20 19 18 35 35 H 1.09002 * 109.47106 * 299.99921 * 20 19 18 36 36 H 1.08997 * 109.47189 * 64.92168 * 21 19 18 37 37 H 1.09006 * 109.46664 * 184.92212 * 21 19 18 38 38 H 1.09002 * 109.46818 * 304.91999 * 21 19 18 39 39 H 1.09006 * 109.50615 * 302.32988 * 22 12 2 40 40 H 1.09001 * 109.50603 * 62.45318 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6570 -1.5860 1.1311 6 6 1.6995 -0.2396 2.4826 7 7 0.9438 0.8300 2.6035 8 14 2.3216 -1.1207 4.0077 9 1 3.8067 -1.1212 4.0079 10 1 1.8273 -0.4203 5.2203 11 1 1.8261 -2.5206 4.0074 12 7 2.0196 -0.6924 -1.1995 13 6 1.4338 -2.0364 -1.3081 14 6 1.9230 -2.6977 -2.5993 15 8 3.3528 -2.7285 -2.6012 16 6 3.9567 -1.4363 -2.4974 17 1 3.6630 -0.8275 -3.3526 18 6 5.4793 -1.5842 -2.4744 19 7 5.9281 -2.2228 -3.7189 20 6 5.8955 -1.2733 -4.8393 21 6 7.2682 -2.8030 -3.5594 22 6 3.4881 -0.7622 -1.2051 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5137 0.8901 26 1 0.7092 1.1611 3.4845 27 1 1.7410 -2.6375 -0.4523 28 1 0.3467 -1.9591 -1.3280 29 1 1.5369 -3.7155 -2.6559 30 1 1.5702 -2.1257 -3.4575 31 1 5.9388 -0.5998 -2.3850 32 1 5.7717 -2.2003 -1.6241 33 1 6.5530 -0.4316 -4.6216 34 1 6.2328 -1.7717 -5.7480 35 1 4.8768 -0.9117 -4.9796 36 1 7.2290 -3.6133 -2.8314 37 1 7.6122 -3.1919 -4.5178 38 1 7.9578 -2.0342 -3.2106 39 1 3.9006 0.2452 -1.1498 40 1 3.8281 -1.3429 -0.3477 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111690704.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:57 Heat of formation + Delta-G solvation = -50.739656 kcal Electronic energy + Delta-G solvation = -18726.099306 eV Core-core repulsion = 15961.366333 eV Total energy + Delta-G solvation = -2764.732973 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.68422 -38.29086 -37.14269 -34.48768 -32.87621 -31.13043 -28.88438 -28.42285 -27.23410 -26.10502 -24.34731 -22.80423 -21.55230 -21.03507 -18.34445 -17.41685 -17.27442 -16.65637 -16.38865 -15.95771 -15.77754 -15.49931 -15.11338 -14.96038 -14.71046 -14.07132 -13.47300 -13.33067 -13.15385 -13.03108 -12.94419 -12.68051 -12.56294 -12.52043 -12.49444 -12.18180 -12.10242 -11.97491 -11.68988 -11.27502 -11.10931 -10.51848 -10.34563 -9.22215 -9.04805 -8.08335 -6.30081 1.36109 1.36926 1.44543 2.37446 2.83764 2.98577 3.12168 3.38194 4.01990 4.09783 4.19469 4.25696 4.36439 4.44853 4.48069 4.52505 4.55787 4.70025 4.71383 4.79498 4.82536 4.87032 5.01297 5.03937 5.04659 5.08984 5.11335 5.17449 5.22004 5.48697 5.65500 5.93339 6.04097 6.11706 6.16669 6.30464 6.39556 6.52885 6.87391 7.40710 8.88366 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027932 B = 0.006469 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.185935 B = 4327.204942 C = 4799.077135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.209 3.791 3 H 0.008 0.992 4 C -0.551 4.551 5 H 0.046 0.954 6 C 0.023 3.977 7 N -0.911 5.911 8 Si 0.946 3.054 9 H -0.275 1.275 10 H -0.280 1.280 11 H -0.275 1.275 12 N -0.535 5.535 13 C 0.024 3.976 14 C 0.070 3.930 15 O -0.382 6.382 16 C 0.112 3.888 17 H 0.062 0.938 18 C 0.069 3.931 19 N -0.555 5.555 20 C 0.023 3.977 21 C 0.027 3.973 22 C 0.037 3.963 23 H 0.031 0.969 24 H 0.034 0.966 25 H 0.061 0.939 26 H 0.263 0.737 27 H 0.018 0.982 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.031 0.969 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.030 0.970 39 H 0.067 0.933 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.904 -5.046 -11.964 15.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.102 3.898 3 H 0.026 0.974 4 C -0.590 4.590 5 H 0.064 0.936 6 C -0.177 4.177 7 N -0.550 5.550 8 Si 0.772 3.228 9 H -0.201 1.201 10 H -0.205 1.205 11 H -0.200 1.200 12 N -0.259 5.259 13 C -0.105 4.105 14 C -0.007 4.007 15 O -0.300 6.300 16 C 0.053 3.947 17 H 0.079 0.921 18 C -0.060 4.060 19 N -0.279 5.279 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.092 4.092 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.037 0.963 28 H 0.100 0.900 29 H 0.129 0.871 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 7.459 -5.201 -12.369 15.352 hybrid contribution 0.698 0.315 2.252 2.379 sum 8.157 -4.886 -10.116 13.883 Atomic orbital electron populations 1.21668 0.97038 0.99328 0.99955 1.19100 0.92820 0.92673 0.85196 0.97430 1.21828 1.31647 1.12778 0.92752 0.93551 1.25591 0.95081 0.95508 1.01502 1.69981 1.37157 1.23678 1.24175 0.85795 0.78694 0.78848 0.79415 1.20061 1.20546 1.20025 1.62695 1.05854 1.17144 1.40228 1.22680 1.00386 0.89991 0.97429 1.22735 0.80795 1.01551 0.95654 1.87977 1.19396 1.28341 1.94317 1.22064 0.92870 0.84356 0.95423 0.92058 1.22032 0.92555 0.98527 0.92891 1.61829 1.26513 1.35068 1.04516 1.22473 1.01623 0.94346 0.93999 1.22413 0.87697 0.99023 1.02957 1.22503 0.89696 1.00110 0.96924 0.94997 0.94738 0.92070 0.92757 0.96315 0.89979 0.87071 0.92216 0.92104 0.91100 0.95044 0.90017 0.92009 0.91799 0.89971 0.95161 0.91425 0.95763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.91 8.54 71.98 0.61 -5.30 16 2 C 0.21 10.67 2.48 44.17 0.11 10.78 16 3 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 4 C -0.55 -30.17 7.12 25.60 0.18 -29.99 16 5 H 0.05 2.59 5.79 -2.91 -0.02 2.57 16 6 C 0.02 1.28 5.30 84.65 0.45 1.73 16 7 N -0.91 -51.94 11.32 21.44 0.24 -51.70 16 8 Si 0.95 43.77 29.54 68.60 2.03 45.79 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 N -0.53 -23.25 4.77 -874.35 -4.17 -27.42 16 13 C 0.02 0.93 4.91 86.31 0.42 1.36 16 14 C 0.07 2.24 7.01 72.01 0.50 2.74 16 15 O -0.38 -13.46 10.34 -148.98 -1.54 -15.00 16 16 C 0.11 3.70 2.86 30.63 0.09 3.78 16 17 H 0.06 1.98 6.93 -2.39 -0.02 1.96 16 18 C 0.07 1.93 4.69 86.30 0.40 2.34 16 19 N -0.56 -13.87 4.83 -948.83 -4.58 -18.45 16 20 C 0.02 0.48 9.39 127.69 1.20 1.68 16 21 C 0.03 0.53 9.52 127.69 1.22 1.75 16 22 C 0.04 1.49 4.56 86.31 0.39 1.89 16 23 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.03 1.59 6.28 -2.39 -0.01 1.57 16 25 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 26 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 27 H 0.02 0.83 6.94 -2.39 -0.02 0.81 16 28 H 0.08 3.14 6.08 -2.39 -0.01 3.13 16 29 H 0.11 3.01 8.14 -2.38 -0.02 2.99 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 1.56 7.96 -2.39 -0.02 1.54 16 32 H 0.07 2.11 7.94 -2.39 -0.02 2.09 16 33 H 0.03 0.58 8.09 -2.38 -0.02 0.56 16 34 H 0.08 1.39 8.06 -2.39 -0.02 1.37 16 35 H 0.06 1.35 6.88 -2.39 -0.02 1.34 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.33 8.04 -2.38 -0.02 1.31 16 38 H 0.03 0.55 8.13 -2.39 -0.02 0.53 16 39 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 40 H 0.02 1.09 6.41 -2.39 -0.02 1.08 16 Total: -1.00 -60.92 305.25 -1.45 -62.37 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.99 Total: 11.65 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 5.58 Total: -7.24 kcal Atomic # 7 Polarization: -89.06 SS G_CDS: -8.51 Total: -97.57 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -1.54 Total: -15.00 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -60.92 -1.45 -62.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111690704.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.627 kcal (2) G-P(sol) polarization free energy of solvation -60.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds