Wall clock time and date at job start Mon Mar 30 2020 05:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47304 * 2 1 4 4 C 1.50700 * 109.47043 * 240.00130 * 2 1 3 5 5 H 1.08005 * 120.00342 * 245.38960 * 4 2 1 6 6 C 1.37879 * 119.99811 * 65.38773 * 4 2 1 7 7 N 1.31515 * 119.99816 * 187.03515 * 6 4 2 8 8 Si 1.86801 * 120.00322 * 7.04138 * 6 4 2 9 9 H 1.48495 * 109.47066 * 270.00181 * 8 6 4 10 10 H 1.48498 * 109.47349 * 149.99413 * 8 6 4 11 11 H 1.48498 * 109.46881 * 29.99592 * 8 6 4 12 12 N 1.46895 * 109.46894 * 120.00559 * 2 1 3 13 13 C 1.47014 * 110.99965 * 176.04580 * 12 2 1 14 14 C 1.53096 * 109.26029 * 177.60514 * 13 12 2 15 15 O 1.43015 * 109.25866 * 56.84587 * 14 13 12 16 16 C 1.43018 * 113.74068 * 301.33318 * 15 14 13 17 17 H 1.08998 * 109.50383 * 298.69090 * 16 15 14 18 18 C 1.52998 * 109.50733 * 178.60418 * 16 15 14 19 19 N 1.46904 * 109.47229 * 64.99794 * 18 16 15 20 20 C 1.46896 * 110.99703 * 66.04660 * 19 18 16 21 21 C 1.46902 * 110.99927 * 189.99876 * 19 18 16 22 22 C 1.47010 * 111.00297 * 52.40939 * 12 2 1 23 23 H 1.08994 * 109.47016 * 173.26304 * 1 2 3 24 24 H 1.08992 * 109.46909 * 293.26608 * 1 2 3 25 25 H 1.09002 * 109.46530 * 53.26272 * 1 2 3 26 26 H 0.96995 * 120.00334 * 354.94459 * 7 6 4 27 27 H 1.09002 * 109.50671 * 297.54043 * 13 12 2 28 28 H 1.08999 * 109.50835 * 57.67064 * 13 12 2 29 29 H 1.09000 * 109.51171 * 176.77988 * 14 13 12 30 30 H 1.09006 * 109.50752 * 296.91344 * 14 13 12 31 31 H 1.09003 * 109.47173 * 184.99675 * 18 16 15 32 32 H 1.09000 * 109.47069 * 304.99628 * 18 16 15 33 33 H 1.08998 * 109.47550 * 59.99878 * 20 19 18 34 34 H 1.09000 * 109.47179 * 179.97438 * 20 19 18 35 35 H 1.09007 * 109.47299 * 299.99969 * 20 19 18 36 36 H 1.09000 * 109.47235 * 60.00164 * 21 19 18 37 37 H 1.08995 * 109.46903 * 179.97438 * 21 19 18 38 38 H 1.08996 * 109.47225 * 300.00077 * 21 19 18 39 39 H 1.08998 * 109.50403 * 302.32574 * 22 12 2 40 40 H 1.08997 * 109.50804 * 62.46209 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5796 -1.6365 -1.1339 6 6 1.7933 -0.1780 -2.4797 7 7 2.1079 -0.8629 -3.5575 8 14 1.0226 1.5159 -2.6413 9 1 -0.4558 1.3847 -2.6874 10 1 1.5017 2.1606 -3.8904 11 1 1.4095 2.3490 -1.4745 12 7 2.0197 -0.6926 1.1993 13 6 3.4862 -0.7947 1.1870 14 6 3.9565 -1.4677 2.4792 15 8 3.3257 -2.7454 2.6022 16 6 1.8970 -2.6830 2.6182 17 1 1.5679 -2.0966 3.4760 18 6 1.3249 -4.0986 2.7173 19 7 1.7022 -4.6900 4.0080 20 6 1.0629 -3.9759 5.1212 21 6 1.3779 -6.1222 4.0457 22 6 1.4059 -2.0223 1.3273 23 1 -0.3633 -1.0205 -0.1206 24 1 -0.3633 0.4059 0.9440 25 1 -0.3632 0.6147 -0.8236 26 1 2.5744 -1.7093 -3.4753 27 1 3.8023 -1.3903 0.3305 28 1 3.9200 0.2028 1.1174 29 1 5.0383 -1.5973 2.4493 30 1 3.6873 -0.8453 3.3326 31 1 0.2384 -4.0576 2.6402 32 1 1.7239 -4.7092 1.9073 33 1 -0.0204 -4.0319 5.0144 34 1 1.3587 -4.4344 6.0647 35 1 1.3755 -2.9317 5.1104 36 1 1.9195 -6.6385 3.2531 37 1 1.6679 -6.5351 5.0119 38 1 0.3060 -6.2560 3.9000 39 1 0.3212 -1.9208 1.3603 40 1 1.6889 -2.6375 0.4732 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111690706.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:01 Heat of formation + Delta-G solvation = -30.000890 kcal Electronic energy + Delta-G solvation = -18815.274031 eV Core-core repulsion = 16051.440358 eV Total energy + Delta-G solvation = -2763.833673 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.33545 -37.17001 -35.70823 -32.47868 -31.52258 -30.18182 -27.63252 -27.16137 -25.62255 -24.36809 -22.82626 -21.36912 -20.23755 -19.22139 -17.40299 -16.10784 -15.92140 -15.41244 -14.88059 -14.65081 -14.35348 -14.05588 -13.84091 -13.56172 -12.97738 -12.62318 -12.42636 -12.22201 -11.75441 -11.73656 -11.71956 -11.53828 -11.41909 -11.13289 -10.65873 -10.55015 -10.50692 -9.92878 -9.82386 -9.69115 -9.06114 -8.86601 -8.52646 -8.30013 -7.38758 -6.39130 -4.14521 3.33960 3.40782 3.55670 3.91649 4.17148 4.43959 4.78489 5.10660 5.15748 5.25173 5.31622 5.35155 5.49986 5.55278 5.57603 5.65473 5.76586 5.80659 5.82395 5.91869 5.93534 6.07422 6.12831 6.33220 6.37592 6.56107 6.57361 6.65904 6.77605 7.00435 7.02073 7.05202 7.16220 7.68848 7.77295 8.02938 8.06938 8.32681 8.86576 9.57213 10.91750 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.035398 B = 0.006132 C = 0.006000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.811536 B = 4565.328507 C = 4665.834907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.173 3.827 3 H 0.040 0.960 4 C -0.619 4.619 5 H 0.059 0.941 6 C 0.030 3.970 7 N -0.911 5.911 8 Si 1.056 2.944 9 H -0.284 1.284 10 H -0.290 1.290 11 H -0.278 1.278 12 N -0.528 5.528 13 C 0.026 3.974 14 C 0.064 3.936 15 O -0.371 6.371 16 C 0.099 3.901 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.539 5.539 20 C 0.022 3.978 21 C 0.026 3.974 22 C 0.029 3.971 23 H 0.048 0.952 24 H 0.034 0.966 25 H 0.044 0.956 26 H 0.266 0.734 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.023 0.977 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.022 0.978 39 H 0.075 0.925 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.027 -4.168 14.512 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.065 3.935 3 H 0.058 0.942 4 C -0.658 4.658 5 H 0.077 0.923 6 C -0.175 4.175 7 N -0.546 5.546 8 Si 0.886 3.114 9 H -0.211 1.211 10 H -0.217 1.217 11 H -0.204 1.204 12 N -0.252 5.252 13 C -0.103 4.103 14 C -0.013 4.013 15 O -0.290 6.290 16 C 0.041 3.959 17 H 0.076 0.924 18 C -0.065 4.065 19 N -0.262 5.262 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.100 4.100 23 H 0.067 0.933 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.040 0.960 39 H 0.094 0.906 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.119 -2.919 13.882 14.343 hybrid contribution -0.229 -1.456 0.109 1.478 sum -2.348 -4.376 13.991 14.846 Atomic orbital electron populations 1.22150 0.98588 1.00699 0.98768 1.19775 0.91464 0.94994 0.87259 0.94191 1.22574 1.40238 1.10578 0.92417 0.92302 1.25752 0.96006 1.03656 0.92068 1.70806 1.37657 1.15523 1.30595 0.83823 0.76320 0.75633 0.75600 1.21102 1.21723 1.20426 1.62664 1.05000 1.16675 1.40890 1.22558 0.89979 1.00757 0.96969 1.22667 0.96835 0.84875 0.96899 1.87992 1.18184 1.28487 1.94324 1.22155 0.81938 0.94546 0.97286 0.92399 1.22134 0.97481 0.95224 0.91671 1.61894 1.58921 1.02587 1.02808 1.22443 0.96109 0.99982 0.94111 1.22370 0.98521 0.88809 1.02559 1.22574 0.99615 0.91544 0.96256 0.93263 0.94664 0.93692 0.92388 0.92891 0.90903 0.89464 0.93512 0.93425 0.89961 0.95896 0.91640 0.91033 0.91341 0.91564 0.95954 0.90630 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.04 37.16 0.30 -2.81 16 2 C 0.17 4.08 2.08 -68.86 -0.14 3.93 16 3 H 0.04 0.98 6.59 -51.93 -0.34 0.64 16 4 C -0.62 -16.95 7.44 -34.44 -0.26 -17.20 16 5 H 0.06 1.77 6.05 -52.48 -0.32 1.45 16 6 C 0.03 0.86 5.42 -17.82 -0.10 0.77 16 7 N -0.91 -27.92 13.70 55.43 0.76 -27.16 16 8 Si 1.06 25.32 25.39 -169.99 -4.32 21.00 16 9 H -0.28 -6.49 6.79 56.52 0.38 -6.10 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.23 6.36 56.52 0.36 -5.87 16 12 N -0.53 -11.11 4.78 -227.73 -1.09 -12.20 16 13 C 0.03 0.52 5.25 -3.71 -0.02 0.50 16 14 C 0.06 1.09 7.01 37.21 0.26 1.35 16 15 O -0.37 -6.83 10.42 -35.23 -0.37 -7.19 16 16 C 0.10 1.67 2.76 -26.68 -0.07 1.60 16 17 H 0.06 0.95 6.34 -51.93 -0.33 0.62 16 18 C 0.06 0.93 4.63 -3.82 -0.02 0.91 16 19 N -0.54 -7.24 4.97 -251.26 -1.25 -8.49 16 20 C 0.02 0.25 9.33 60.06 0.56 0.81 16 21 C 0.03 0.28 9.57 60.07 0.57 0.85 16 22 C 0.03 0.57 4.17 -3.71 -0.02 0.56 16 23 H 0.05 1.05 6.68 -51.93 -0.35 0.71 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.04 0.98 4.56 -51.93 -0.24 0.74 16 26 H 0.27 8.18 8.72 -40.82 -0.36 7.83 16 27 H 0.05 1.22 6.43 -51.93 -0.33 0.88 16 28 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16 32 H 0.08 1.27 8.06 -51.93 -0.42 0.85 16 33 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 35 H 0.07 0.86 6.37 -51.93 -0.33 0.53 16 36 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 37 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 38 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.08 1.41 6.21 -51.93 -0.32 1.09 16 40 H 0.05 1.08 6.93 -51.93 -0.36 0.72 16 LS Contribution 299.52 15.07 4.51 4.51 Total: -1.00 -30.32 299.52 -7.45 -37.77 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.77 Total: 0.48 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 1.07 Total: -8.74 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -1.58 Total: -47.84 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.37 Total: -7.19 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -4.32 Total: 21.00 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.32 -7.45 -37.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111690706.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.769 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds