Wall clock time and date at job start Mon Mar 30 2020 05:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47304 * 2 1 4 4 C 1.50700 * 109.47043 * 240.00130 * 2 1 3 5 5 H 1.08005 * 120.00342 * 245.38960 * 4 2 1 6 6 C 1.37879 * 119.99811 * 65.38773 * 4 2 1 7 7 N 1.31515 * 119.99816 * 187.03515 * 6 4 2 8 8 Si 1.86801 * 120.00322 * 7.04138 * 6 4 2 9 9 H 1.48495 * 109.47066 * 270.00181 * 8 6 4 10 10 H 1.48498 * 109.47349 * 149.99413 * 8 6 4 11 11 H 1.48498 * 109.46881 * 29.99592 * 8 6 4 12 12 N 1.46895 * 109.46894 * 120.00559 * 2 1 3 13 13 C 1.47014 * 110.99965 * 176.04580 * 12 2 1 14 14 C 1.53096 * 109.26029 * 177.60514 * 13 12 2 15 15 O 1.43015 * 109.25866 * 56.84587 * 14 13 12 16 16 C 1.43018 * 113.74068 * 301.33318 * 15 14 13 17 17 H 1.08998 * 109.50383 * 298.69090 * 16 15 14 18 18 C 1.52998 * 109.50733 * 178.60418 * 16 15 14 19 19 N 1.46904 * 109.47229 * 64.99794 * 18 16 15 20 20 C 1.46896 * 110.99703 * 66.04660 * 19 18 16 21 21 C 1.46902 * 110.99927 * 189.99876 * 19 18 16 22 22 C 1.47010 * 111.00297 * 52.40939 * 12 2 1 23 23 H 1.08994 * 109.47016 * 173.26304 * 1 2 3 24 24 H 1.08992 * 109.46909 * 293.26608 * 1 2 3 25 25 H 1.09002 * 109.46530 * 53.26272 * 1 2 3 26 26 H 0.96995 * 120.00334 * 354.94459 * 7 6 4 27 27 H 1.09002 * 109.50671 * 297.54043 * 13 12 2 28 28 H 1.08999 * 109.50835 * 57.67064 * 13 12 2 29 29 H 1.09000 * 109.51171 * 176.77988 * 14 13 12 30 30 H 1.09006 * 109.50752 * 296.91344 * 14 13 12 31 31 H 1.09003 * 109.47173 * 184.99675 * 18 16 15 32 32 H 1.09000 * 109.47069 * 304.99628 * 18 16 15 33 33 H 1.08998 * 109.47550 * 59.99878 * 20 19 18 34 34 H 1.09000 * 109.47179 * 179.97438 * 20 19 18 35 35 H 1.09007 * 109.47299 * 299.99969 * 20 19 18 36 36 H 1.09000 * 109.47235 * 60.00164 * 21 19 18 37 37 H 1.08995 * 109.46903 * 179.97438 * 21 19 18 38 38 H 1.08996 * 109.47225 * 300.00077 * 21 19 18 39 39 H 1.08998 * 109.50403 * 302.32574 * 22 12 2 40 40 H 1.08997 * 109.50804 * 62.46209 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5796 -1.6365 -1.1339 6 6 1.7933 -0.1780 -2.4797 7 7 2.1079 -0.8629 -3.5575 8 14 1.0226 1.5159 -2.6413 9 1 -0.4558 1.3847 -2.6874 10 1 1.5017 2.1606 -3.8904 11 1 1.4095 2.3490 -1.4745 12 7 2.0197 -0.6926 1.1993 13 6 3.4862 -0.7947 1.1870 14 6 3.9565 -1.4677 2.4792 15 8 3.3257 -2.7454 2.6022 16 6 1.8970 -2.6830 2.6182 17 1 1.5679 -2.0966 3.4760 18 6 1.3249 -4.0986 2.7173 19 7 1.7022 -4.6900 4.0080 20 6 1.0629 -3.9759 5.1212 21 6 1.3779 -6.1222 4.0457 22 6 1.4059 -2.0223 1.3273 23 1 -0.3633 -1.0205 -0.1206 24 1 -0.3633 0.4059 0.9440 25 1 -0.3632 0.6147 -0.8236 26 1 2.5744 -1.7093 -3.4753 27 1 3.8023 -1.3903 0.3305 28 1 3.9200 0.2028 1.1174 29 1 5.0383 -1.5973 2.4493 30 1 3.6873 -0.8453 3.3326 31 1 0.2384 -4.0576 2.6402 32 1 1.7239 -4.7092 1.9073 33 1 -0.0204 -4.0319 5.0144 34 1 1.3587 -4.4344 6.0647 35 1 1.3755 -2.9317 5.1104 36 1 1.9195 -6.6385 3.2531 37 1 1.6679 -6.5351 5.0119 38 1 0.3060 -6.2560 3.9000 39 1 0.3212 -1.9208 1.3603 40 1 1.6889 -2.6375 0.4732 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111690706.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:00 Heat of formation + Delta-G solvation = -54.296850 kcal Electronic energy + Delta-G solvation = -18816.327582 eV Core-core repulsion = 16051.440358 eV Total energy + Delta-G solvation = -2764.887225 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.82621 -38.37527 -37.28552 -34.56726 -32.89015 -31.98243 -28.59278 -28.44927 -27.28560 -26.23264 -24.18192 -22.74900 -21.62539 -21.11995 -19.41413 -17.50563 -17.41898 -16.59739 -16.14306 -16.00163 -15.83696 -15.78526 -15.40136 -14.93445 -14.66526 -14.29146 -13.85400 -13.38972 -13.32677 -13.19578 -13.01272 -12.89990 -12.64004 -12.52037 -12.41017 -12.17128 -12.02117 -11.70731 -11.48994 -11.27128 -11.06878 -10.69648 -10.44513 -9.32984 -9.26221 -8.60159 -6.43073 1.41775 1.52023 1.68444 2.45215 2.76395 2.90460 3.07170 3.23809 3.93172 4.00884 4.09939 4.16662 4.27312 4.37561 4.42071 4.44520 4.51285 4.56748 4.60079 4.65184 4.73997 4.75379 4.79345 4.80921 4.97852 4.98676 4.99918 5.05223 5.14991 5.20545 5.37514 5.82796 5.94804 5.99324 6.10263 6.11757 6.26326 6.35281 6.62458 7.37700 8.61595 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.035398 B = 0.006132 C = 0.006000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.811536 B = 4565.328507 C = 4665.834907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.170 3.830 3 H 0.041 0.959 4 C -0.609 4.609 5 H 0.015 0.985 6 C -0.024 4.024 7 N -0.946 5.946 8 Si 1.094 2.906 9 H -0.261 1.261 10 H -0.295 1.295 11 H -0.249 1.249 12 N -0.521 5.521 13 C 0.026 3.974 14 C 0.071 3.929 15 O -0.387 6.387 16 C 0.107 3.893 17 H 0.074 0.926 18 C 0.069 3.931 19 N -0.557 5.557 20 C 0.022 3.978 21 C 0.026 3.974 22 C 0.034 3.966 23 H 0.042 0.958 24 H 0.067 0.933 25 H 0.045 0.955 26 H 0.247 0.753 27 H 0.010 0.990 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.033 0.967 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.031 0.969 39 H 0.087 0.913 40 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.282 -3.055 17.144 17.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.062 3.938 3 H 0.058 0.942 4 C -0.647 4.647 5 H 0.033 0.967 6 C -0.221 4.221 7 N -0.582 5.582 8 Si 0.916 3.084 9 H -0.187 1.187 10 H -0.222 1.222 11 H -0.173 1.173 12 N -0.244 5.244 13 C -0.103 4.103 14 C -0.006 4.006 15 O -0.306 6.306 16 C 0.049 3.951 17 H 0.091 0.909 18 C -0.060 4.060 19 N -0.281 5.281 20 C -0.126 4.126 21 C -0.122 4.122 22 C -0.095 4.095 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.028 0.972 28 H 0.098 0.902 29 H 0.126 0.874 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.050 0.950 39 H 0.105 0.895 40 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -3.373 -1.831 16.556 16.995 hybrid contribution 0.233 -1.894 -0.661 2.020 sum -3.140 -3.725 15.895 16.625 Atomic orbital electron populations 1.22045 0.96399 1.00686 1.00584 1.19753 0.93175 0.94565 0.86346 0.94169 1.22728 1.38689 1.08860 0.94457 0.96684 1.27240 0.96262 1.06789 0.91830 1.70949 1.40012 1.15469 1.31816 0.83399 0.76944 0.71559 0.76489 1.18668 1.22198 1.17294 1.62711 1.05538 1.17272 1.38923 1.22611 0.89539 1.00766 0.97361 1.22725 0.97929 0.84396 0.95501 1.87988 1.19079 1.29382 1.94163 1.22173 0.81244 0.95904 0.95819 0.90851 1.22010 0.97938 0.93734 0.92328 1.61866 1.59833 1.03924 1.02448 1.22481 0.96613 0.99477 0.94010 1.22411 0.99096 0.87324 1.03364 1.22596 1.00228 0.90287 0.96372 0.93904 0.91402 0.93620 0.94409 0.97206 0.90200 0.87391 0.91309 0.92099 0.91675 0.94896 0.89975 0.91736 0.91939 0.89845 0.95000 0.89508 0.97613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.68 8.04 71.98 0.58 -5.10 16 2 C 0.17 7.87 2.08 44.17 0.09 7.96 16 3 H 0.04 1.89 6.59 -2.39 -0.02 1.87 16 4 C -0.61 -34.30 7.44 25.60 0.19 -34.11 16 5 H 0.01 0.96 6.05 -2.91 -0.02 0.94 16 6 C -0.02 -1.39 5.42 84.65 0.46 -0.93 16 7 N -0.95 -60.17 13.70 21.45 0.29 -59.88 16 8 Si 1.09 50.00 25.39 68.60 1.74 51.75 16 9 H -0.26 -10.97 6.79 99.48 0.68 -10.30 16 10 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 11 H -0.25 -10.12 6.36 99.48 0.63 -9.49 16 12 N -0.52 -21.49 4.78 -874.39 -4.18 -25.67 16 13 C 0.03 1.05 5.25 86.31 0.45 1.50 16 14 C 0.07 2.30 7.01 72.01 0.50 2.81 16 15 O -0.39 -13.87 10.42 -148.98 -1.55 -15.43 16 16 C 0.11 3.47 2.76 30.63 0.08 3.55 16 17 H 0.07 2.20 6.34 -2.39 -0.02 2.18 16 18 C 0.07 1.94 4.63 86.30 0.40 2.34 16 19 N -0.56 -13.84 4.97 -948.85 -4.71 -18.55 16 20 C 0.02 0.44 9.33 127.69 1.19 1.63 16 21 C 0.03 0.51 9.57 127.69 1.22 1.73 16 22 C 0.03 1.34 4.17 86.32 0.36 1.70 16 23 H 0.04 1.77 6.68 -2.39 -0.02 1.75 16 24 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.05 1.85 4.56 -2.39 -0.01 1.83 16 26 H 0.25 16.16 8.72 -92.71 -0.81 15.35 16 27 H 0.01 0.47 6.43 -2.39 -0.02 0.45 16 28 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 29 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 30 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.06 1.54 8.12 -2.39 -0.02 1.52 16 32 H 0.06 2.04 8.06 -2.39 -0.02 2.02 16 33 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.08 1.36 8.12 -2.39 -0.02 1.34 16 35 H 0.06 1.37 6.37 -2.38 -0.02 1.35 16 36 H 0.06 1.29 8.12 -2.39 -0.02 1.27 16 37 H 0.08 1.35 8.12 -2.39 -0.02 1.33 16 38 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.09 3.14 6.21 -2.39 -0.01 3.13 16 40 H 0.01 0.26 6.93 -2.39 -0.02 0.24 16 Total: -1.00 -67.47 299.52 -2.02 -69.50 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.86 Total: 15.21 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 5.54 Total: -16.93 kcal Atomic # 7 Polarization: -95.50 SS G_CDS: -8.60 Total: -104.10 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -1.55 Total: -15.43 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 1.74 Total: 51.75 kcal Total: -67.47 -2.02 -69.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111690706.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.199 kcal (2) G-P(sol) polarization free energy of solvation -67.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds