Wall clock time and date at job start Mon Mar 30 2020 05:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42892 * 113.99956 * 2 1 4 4 C 1.53010 * 109.47091 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47259 * 177.82656 * 4 3 2 6 6 H 1.09004 * 109.46688 * 58.72816 * 5 4 3 7 7 C 1.53002 * 109.46993 * 298.73259 * 5 4 3 8 8 N 1.46897 * 109.47036 * 178.72863 * 5 4 3 9 9 C 1.46893 * 111.00057 * 304.09618 * 8 5 4 10 10 C 1.53237 * 109.34209 * 172.74594 * 9 8 5 11 11 N 1.47086 * 108.51920 * 53.82760 * 10 9 8 12 12 C 1.36943 * 120.88056 * 128.83697 * 11 10 9 13 13 H 1.07997 * 120.00084 * 210.08386 * 12 11 10 14 14 C 1.38812 * 119.99699 * 30.08800 * 12 11 10 15 15 N 1.31620 * 120.00293 * 12.39637 * 14 12 11 16 16 Si 1.86797 * 119.99905 * 192.39686 * 14 12 11 17 17 H 1.48504 * 109.47284 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47542 * 119.99505 * 16 14 12 19 19 H 1.48498 * 109.47378 * 240.00089 * 16 14 12 20 20 C 1.47079 * 118.23995 * 308.81894 * 11 10 9 21 21 C 1.46903 * 110.99936 * 179.79158 * 8 5 4 22 22 H 1.09003 * 109.47331 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47523 * 299.99940 * 1 2 3 24 24 H 1.09003 * 109.46951 * 60.00375 * 1 2 3 25 25 H 1.08992 * 109.47334 * 60.00082 * 3 2 1 26 26 H 1.09000 * 109.47536 * 299.99742 * 3 2 1 27 27 H 1.09003 * 109.46492 * 297.82411 * 4 3 2 28 28 H 1.08994 * 109.46801 * 57.82580 * 4 3 2 29 29 H 1.09004 * 109.46599 * 299.99641 * 7 5 4 30 30 H 1.08996 * 109.47562 * 59.99688 * 7 5 4 31 31 H 1.08997 * 109.46769 * 180.02562 * 7 5 4 32 32 H 1.09000 * 109.49530 * 292.70738 * 9 8 5 33 33 H 1.08999 * 109.49757 * 52.78616 * 9 8 5 34 34 H 1.08999 * 109.63181 * 294.12328 * 10 9 8 35 35 H 1.09000 * 109.63227 * 173.53489 * 10 9 8 36 36 H 0.96994 * 120.00020 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.62664 * 291.47463 * 20 11 10 38 38 H 1.08992 * 109.63037 * 170.89243 * 20 11 10 39 39 H 1.09000 * 109.49126 * 307.21878 * 21 8 5 40 40 H 1.09006 * 109.49030 * 67.29396 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1577 2.5813 -0.0554 6 1 3.8211 3.1628 0.8029 7 6 3.7273 3.2811 -1.3461 8 7 5.6219 2.4665 -0.0253 9 6 6.0667 1.7128 1.1545 10 6 7.5748 1.4595 1.0560 11 7 8.2525 2.7486 0.8495 12 6 9.3044 3.1245 1.6418 13 1 9.4838 4.1707 1.8405 14 6 10.1399 2.1606 2.1894 15 7 10.0796 0.9174 1.7615 16 14 11.3498 2.6281 3.5336 17 1 11.2214 4.0769 3.8333 18 1 11.0575 1.8411 4.7585 19 1 12.7329 2.3383 3.0773 20 6 7.7708 3.6229 -0.2306 21 6 6.2550 3.7909 -0.0814 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6886 1.8463 0.8899 26 1 1.6886 1.8463 -0.8900 27 1 3.8601 0.6775 0.9080 28 1 3.8541 0.6106 -0.8707 29 1 4.0640 2.6995 -2.2043 30 1 2.6409 3.3662 -1.3684 31 1 4.1710 4.2759 -1.3852 32 1 5.8526 2.2876 2.0554 33 1 5.5399 0.7595 1.1970 34 1 7.7810 0.7986 0.2140 35 1 7.9306 1.0027 1.9794 36 1 10.6632 0.2439 2.1444 37 1 7.9957 3.1699 -1.1961 38 1 8.2560 4.5962 -0.1577 39 1 5.8646 4.3448 -0.9352 40 1 6.0382 4.3369 0.8368 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122704525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:32 Heat of formation + Delta-G solvation = -17.206686 kcal Electronic energy + Delta-G solvation = -18281.640709 eV Core-core repulsion = 15518.361835 eV Total energy + Delta-G solvation = -2763.278875 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.84729 -37.74420 -35.29385 -32.64230 -30.66684 -30.28193 -28.47817 -26.44600 -26.09731 -23.86633 -22.66526 -21.93742 -19.88107 -19.05082 -16.98991 -16.46745 -16.11310 -15.52207 -14.82017 -14.51467 -14.34768 -14.06853 -13.52166 -13.38864 -13.15697 -12.96508 -12.46074 -12.18252 -11.88158 -11.64634 -11.33243 -11.22855 -10.94081 -10.85689 -10.67171 -10.60291 -10.34150 -10.19504 -9.98847 -9.73702 -9.59291 -9.49172 -8.47294 -7.73530 -6.56072 -5.73584 -3.19348 3.39062 3.46431 3.48608 3.61233 4.42557 4.53309 4.94406 5.03527 5.15237 5.17048 5.27348 5.34313 5.42022 5.45834 5.46339 5.52168 5.58713 5.81562 5.96129 5.97491 6.07016 6.09462 6.22848 6.28420 6.30758 6.42314 6.49076 6.63583 6.78601 6.99770 7.07048 7.32309 7.70163 7.73574 7.78422 7.87876 8.50529 9.26746 9.88800 10.49385 11.34943 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.039042 B = 0.004966 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.009022 B = 5636.474813 C = 6107.546247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.062 3.938 4 C -0.114 4.114 5 C 0.083 3.917 6 H 0.032 0.968 7 C -0.147 4.147 8 N -0.526 5.526 9 C 0.030 3.970 10 C 0.180 3.820 11 N -0.596 5.596 12 C -0.252 4.252 13 H 0.064 0.936 14 C 0.003 3.997 15 N -0.904 5.904 16 Si 0.903 3.097 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.290 1.290 20 C 0.149 3.851 21 C 0.042 3.958 22 H 0.084 0.916 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.022 0.978 33 H 0.066 0.934 34 H 0.026 0.974 35 H 0.086 0.914 36 H 0.253 0.747 37 H 0.025 0.975 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.623 2.063 -3.897 17.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.015 4.015 4 C -0.152 4.152 5 C -0.026 4.026 6 H 0.050 0.950 7 C -0.205 4.205 8 N -0.252 5.252 9 C -0.099 4.099 10 C 0.054 3.946 11 N -0.319 5.319 12 C -0.382 4.382 13 H 0.082 0.918 14 C -0.195 4.195 15 N -0.548 5.548 16 Si 0.733 3.267 17 H -0.203 1.203 18 H -0.216 1.216 19 H -0.217 1.217 20 C 0.022 3.978 21 C -0.087 4.087 22 H 0.102 0.898 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.045 0.955 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -16.235 1.513 -4.248 16.850 hybrid contribution 0.125 0.853 1.455 1.691 sum -16.111 2.365 -2.793 16.521 Atomic orbital electron populations 1.22712 0.81422 1.02565 0.99756 1.87893 1.19356 1.28412 1.95377 1.22636 0.94618 0.84278 0.99943 1.21604 0.91769 0.97568 1.04233 1.21466 0.89542 0.94698 0.96923 0.95009 1.21962 0.99896 1.00695 0.97929 1.61982 1.03751 1.17634 1.41799 1.22999 1.00739 0.96629 0.89523 1.20839 0.84967 0.87499 1.01269 1.44098 1.35578 1.18262 1.33997 1.19223 1.03740 0.92343 1.22894 0.91831 1.25131 0.97569 0.96288 1.00558 1.70002 1.40480 1.01561 1.42792 0.86213 0.80939 0.77840 0.81712 1.20325 1.21605 1.21657 1.20980 0.90104 0.94716 0.91968 1.22684 0.97869 0.89169 0.99019 0.89771 0.94274 0.94254 0.93713 0.93042 0.90693 0.90172 0.91653 0.92830 0.92397 0.95939 0.91566 0.95540 0.89620 0.93674 0.95708 0.92761 0.91660 0.95697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -5.01 10.70 -35.23 -0.38 -5.39 16 3 C 0.06 0.73 5.68 37.16 0.21 0.94 16 4 C -0.11 -1.58 4.79 -26.73 -0.13 -1.71 16 5 C 0.08 1.21 2.19 -67.71 -0.15 1.06 16 6 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 7 C -0.15 -1.80 8.65 37.16 0.32 -1.48 16 8 N -0.53 -9.61 4.50 -226.35 -1.02 -10.63 16 9 C 0.03 0.61 5.32 -3.70 -0.02 0.59 16 10 C 0.18 4.49 5.37 -3.60 -0.02 4.47 16 11 N -0.60 -15.53 3.03 -172.02 -0.52 -16.05 16 12 C -0.25 -7.09 9.62 -15.06 -0.14 -7.24 16 13 H 0.06 1.76 7.86 -52.49 -0.41 1.34 16 14 C 0.00 0.09 5.02 -17.43 -0.09 0.00 16 15 N -0.90 -26.71 11.13 55.49 0.62 -26.09 16 16 Si 0.90 21.98 29.57 -169.99 -5.03 16.95 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 C 0.15 3.27 6.69 -3.60 -0.02 3.24 16 21 C 0.04 0.77 5.39 -3.70 -0.02 0.75 16 22 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 24 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.54 6.35 -51.93 -0.33 0.21 16 27 H 0.07 1.12 6.12 -51.93 -0.32 0.80 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.54 6.41 -51.93 -0.33 0.21 16 31 H 0.06 0.70 6.25 -51.93 -0.32 0.38 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 1.23 5.81 -51.93 -0.30 0.93 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 2.35 6.24 -51.93 -0.32 2.02 16 36 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 1.14 7.95 -51.93 -0.41 0.73 16 39 H 0.07 1.03 5.94 -51.93 -0.31 0.72 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 306.78 15.07 4.62 4.62 Total: -1.00 -30.62 306.78 -7.50 -38.11 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -6.85 Total: -3.54 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 1.05 Total: 2.02 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.92 Total: -52.77 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.38 Total: -5.39 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.62 -7.50 -38.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122704525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.908 kcal (2) G-P(sol) polarization free energy of solvation -30.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds