Wall clock time and date at job start Mon Mar 30 2020 05:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42892 * 113.99956 * 2 1 4 4 C 1.53010 * 109.47091 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47259 * 177.82656 * 4 3 2 6 6 H 1.09004 * 109.46688 * 58.72816 * 5 4 3 7 7 C 1.53002 * 109.46993 * 298.73259 * 5 4 3 8 8 N 1.46897 * 109.47036 * 178.72863 * 5 4 3 9 9 C 1.46893 * 111.00057 * 304.09618 * 8 5 4 10 10 C 1.53237 * 109.34209 * 172.74594 * 9 8 5 11 11 N 1.47086 * 108.51920 * 53.82760 * 10 9 8 12 12 C 1.36943 * 120.88056 * 128.83697 * 11 10 9 13 13 H 1.07997 * 120.00084 * 210.08386 * 12 11 10 14 14 C 1.38812 * 119.99699 * 30.08800 * 12 11 10 15 15 N 1.31620 * 120.00293 * 12.39637 * 14 12 11 16 16 Si 1.86797 * 119.99905 * 192.39686 * 14 12 11 17 17 H 1.48504 * 109.47284 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47542 * 119.99505 * 16 14 12 19 19 H 1.48498 * 109.47378 * 240.00089 * 16 14 12 20 20 C 1.47079 * 118.23995 * 308.81894 * 11 10 9 21 21 C 1.46903 * 110.99936 * 179.79158 * 8 5 4 22 22 H 1.09003 * 109.47331 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47523 * 299.99940 * 1 2 3 24 24 H 1.09003 * 109.46951 * 60.00375 * 1 2 3 25 25 H 1.08992 * 109.47334 * 60.00082 * 3 2 1 26 26 H 1.09000 * 109.47536 * 299.99742 * 3 2 1 27 27 H 1.09003 * 109.46492 * 297.82411 * 4 3 2 28 28 H 1.08994 * 109.46801 * 57.82580 * 4 3 2 29 29 H 1.09004 * 109.46599 * 299.99641 * 7 5 4 30 30 H 1.08996 * 109.47562 * 59.99688 * 7 5 4 31 31 H 1.08997 * 109.46769 * 180.02562 * 7 5 4 32 32 H 1.09000 * 109.49530 * 292.70738 * 9 8 5 33 33 H 1.08999 * 109.49757 * 52.78616 * 9 8 5 34 34 H 1.08999 * 109.63181 * 294.12328 * 10 9 8 35 35 H 1.09000 * 109.63227 * 173.53489 * 10 9 8 36 36 H 0.96994 * 120.00020 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.62664 * 291.47463 * 20 11 10 38 38 H 1.08992 * 109.63037 * 170.89243 * 20 11 10 39 39 H 1.09000 * 109.49126 * 307.21878 * 21 8 5 40 40 H 1.09006 * 109.49030 * 67.29396 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1577 2.5813 -0.0554 6 1 3.8211 3.1628 0.8029 7 6 3.7273 3.2811 -1.3461 8 7 5.6219 2.4665 -0.0253 9 6 6.0667 1.7128 1.1545 10 6 7.5748 1.4595 1.0560 11 7 8.2525 2.7486 0.8495 12 6 9.3044 3.1245 1.6418 13 1 9.4838 4.1707 1.8405 14 6 10.1399 2.1606 2.1894 15 7 10.0796 0.9174 1.7615 16 14 11.3498 2.6281 3.5336 17 1 11.2214 4.0769 3.8333 18 1 11.0575 1.8411 4.7585 19 1 12.7329 2.3383 3.0773 20 6 7.7708 3.6229 -0.2306 21 6 6.2550 3.7909 -0.0814 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6886 1.8463 0.8899 26 1 1.6886 1.8463 -0.8900 27 1 3.8601 0.6775 0.9080 28 1 3.8541 0.6106 -0.8707 29 1 4.0640 2.6995 -2.2043 30 1 2.6409 3.3662 -1.3684 31 1 4.1710 4.2759 -1.3852 32 1 5.8526 2.2876 2.0554 33 1 5.5399 0.7595 1.1970 34 1 7.7810 0.7986 0.2140 35 1 7.9306 1.0027 1.9794 36 1 10.6632 0.2439 2.1444 37 1 7.9957 3.1699 -1.1961 38 1 8.2560 4.5962 -0.1577 39 1 5.8646 4.3448 -0.9352 40 1 6.0382 4.3369 0.8368 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122704525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:31 Heat of formation + Delta-G solvation = -38.231026 kcal Electronic energy + Delta-G solvation = -18282.552393 eV Core-core repulsion = 15518.361835 eV Total energy + Delta-G solvation = -2764.190558 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.22188 -38.79863 -36.92472 -34.31645 -32.42363 -31.92228 -29.67040 -27.93569 -27.20860 -25.29928 -24.35044 -23.46649 -21.24039 -20.69117 -18.78942 -17.64780 -17.01425 -16.96681 -16.45410 -15.86197 -15.58146 -15.42824 -15.27567 -15.08306 -14.88580 -14.22673 -13.79408 -13.46892 -13.17902 -12.95153 -12.78878 -12.60354 -12.51394 -12.28864 -12.15467 -12.05825 -11.91882 -11.91068 -11.73380 -11.32324 -11.19332 -10.60944 -10.55199 -9.23188 -8.63578 -7.87519 -5.37662 1.45814 1.46468 1.57756 2.49668 2.68338 3.13595 3.29029 3.68177 3.92575 4.05261 4.15188 4.32785 4.34553 4.36734 4.44653 4.49366 4.56150 4.59748 4.61484 4.66949 4.71534 4.86519 4.87125 4.91188 4.98006 5.06279 5.10370 5.20334 5.30963 5.36862 5.44152 5.60826 5.67908 6.21822 6.24874 6.36183 6.39338 7.13500 7.82804 8.39052 9.19140 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.039042 B = 0.004966 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.009022 B = 5636.474813 C = 6107.546247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.421 6.421 3 C 0.067 3.933 4 C -0.110 4.110 5 C 0.084 3.916 6 H 0.037 0.963 7 C -0.142 4.142 8 N -0.537 5.537 9 C 0.048 3.952 10 C 0.189 3.811 11 N -0.615 5.615 12 C -0.267 4.267 13 H 0.067 0.933 14 C -0.050 4.050 15 N -0.937 5.937 16 Si 0.972 3.028 17 H -0.266 1.266 18 H -0.289 1.289 19 H -0.290 1.290 20 C 0.144 3.856 21 C 0.054 3.946 22 H 0.094 0.906 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.016 0.984 33 H 0.080 0.920 34 H -0.003 1.003 35 H 0.053 0.947 36 H 0.250 0.750 37 H 0.015 0.985 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.512 3.468 -4.099 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.009 4.009 4 C -0.148 4.148 5 C -0.024 4.024 6 H 0.055 0.945 7 C -0.199 4.199 8 N -0.262 5.262 9 C -0.081 4.081 10 C 0.063 3.937 11 N -0.340 5.340 12 C -0.397 4.397 13 H 0.084 0.916 14 C -0.245 4.245 15 N -0.583 5.583 16 Si 0.799 3.201 17 H -0.190 1.190 18 H -0.216 1.216 19 H -0.217 1.217 20 C 0.018 3.982 21 C -0.075 4.075 22 H 0.112 0.888 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.034 0.966 33 H 0.099 0.901 34 H 0.015 0.985 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.033 0.967 38 H 0.079 0.921 39 H 0.118 0.882 40 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -18.158 2.944 -4.468 18.930 hybrid contribution 0.668 0.401 1.455 1.650 sum -17.490 3.345 -3.013 18.060 Atomic orbital electron populations 1.22923 0.79431 1.03743 1.00946 1.87846 1.21599 1.29024 1.95623 1.22574 0.92742 0.84335 1.01284 1.21523 0.93773 0.96763 1.02746 1.21562 0.86701 0.95520 0.98625 0.94521 1.21939 1.01740 1.00281 0.95956 1.61930 1.06470 1.17468 1.40379 1.22635 0.97406 0.97799 0.90286 1.20568 0.88041 0.86819 0.98290 1.44386 1.35620 1.18859 1.35100 1.19572 1.04234 0.92603 1.23274 0.91573 1.25932 0.99558 0.96216 1.02838 1.70173 1.41454 1.02544 1.44122 0.85145 0.78264 0.78035 0.78614 1.19002 1.21577 1.21714 1.21146 0.92804 0.94038 0.90220 1.22529 0.95221 0.89504 1.00269 0.88770 0.93258 0.92812 0.92724 0.91183 0.92408 0.91423 0.92187 0.90059 0.91905 0.96610 0.90141 0.98523 0.92862 0.94044 0.96702 0.92114 0.88191 0.96131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -9.99 10.70 -148.98 -1.59 -11.58 16 3 C 0.07 1.41 5.68 71.99 0.41 1.81 16 4 C -0.11 -2.89 4.79 30.60 0.15 -2.74 16 5 C 0.08 2.25 2.19 44.92 0.10 2.35 16 6 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 7 C -0.14 -2.97 8.65 71.98 0.62 -2.35 16 8 N -0.54 -19.00 4.50 -870.02 -3.91 -22.91 16 9 C 0.05 1.96 5.32 86.38 0.46 2.42 16 10 C 0.19 9.75 5.37 86.35 0.46 10.21 16 11 N -0.62 -32.69 3.03 -698.14 -2.11 -34.80 16 12 C -0.27 -15.21 9.62 84.03 0.81 -14.40 16 13 H 0.07 3.66 7.86 -2.91 -0.02 3.63 16 14 C -0.05 -2.88 5.02 84.86 0.43 -2.45 16 15 N -0.94 -57.14 11.13 21.65 0.24 -56.90 16 16 Si 0.97 45.77 29.57 68.60 2.03 47.80 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 19 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 20 C 0.14 6.26 6.69 86.35 0.58 6.84 16 21 C 0.05 1.89 5.39 86.38 0.47 2.35 16 22 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 26 H 0.07 1.20 6.35 -2.39 -0.02 1.18 16 27 H 0.06 1.69 6.12 -2.39 -0.01 1.68 16 28 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.28 6.41 -2.39 -0.02 1.26 16 31 H 0.06 1.26 6.25 -2.39 -0.01 1.25 16 32 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 3.03 5.81 -2.39 -0.01 3.01 16 34 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 35 H 0.05 3.06 6.24 -2.39 -0.01 3.05 16 36 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 37 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.06 2.52 7.95 -2.39 -0.02 2.50 16 39 H 0.10 2.84 5.94 -2.39 -0.01 2.83 16 40 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -67.11 306.78 1.37 -65.74 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 0.99 Total: 6.95 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 5.73 Total: 5.69 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -5.79 Total: -114.61 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -1.59 Total: -11.58 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -67.11 1.37 -65.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122704525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.514 kcal (2) G-P(sol) polarization free energy of solvation -67.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds