Wall clock time and date at job start Mon Mar 30 2020 04:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99962 * 2 1 4 4 C 1.53002 * 109.46961 * 184.74908 * 3 2 1 5 5 N 1.46903 * 109.46961 * 65.60283 * 4 3 2 6 6 C 1.46905 * 110.99729 * 193.27508 * 5 4 3 7 7 H 1.08996 * 109.49241 * 292.70058 * 6 5 4 8 8 C 1.53003 * 109.49451 * 52.78417 * 6 5 4 9 9 C 1.53236 * 109.33603 * 172.74246 * 6 5 4 10 10 N 1.47077 * 108.52295 * 53.82976 * 9 6 5 11 11 C 1.36938 * 120.88283 * 128.83224 * 10 9 6 12 12 H 1.07997 * 120.00306 * 327.17984 * 11 10 9 13 13 C 1.38812 * 120.00017 * 147.17124 * 11 10 9 14 14 N 1.31615 * 120.00000 * 347.74134 * 13 11 10 15 15 Si 1.86801 * 119.99888 * 167.73905 * 13 11 10 16 16 H 1.48493 * 109.47198 * 60.00456 * 15 13 11 17 17 H 1.48509 * 109.46920 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47362 * 300.00221 * 15 13 11 19 19 C 1.47075 * 118.23911 * 308.81218 * 10 9 6 20 20 C 1.46894 * 111.00591 * 68.97067 * 5 4 3 21 21 H 1.09004 * 109.49258 * 307.21626 * 20 5 4 22 22 C 1.53004 * 109.49291 * 67.26353 * 20 5 4 23 23 H 1.08999 * 109.46756 * 59.99951 * 1 2 3 24 24 H 1.09000 * 109.47282 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47106 * 300.00248 * 1 2 3 26 26 H 1.08995 * 109.47342 * 64.75161 * 3 2 1 27 27 H 1.09000 * 109.47002 * 304.75208 * 3 2 1 28 28 H 1.08991 * 109.47481 * 305.59659 * 4 3 2 29 29 H 1.09010 * 109.46891 * 185.59368 * 4 3 2 30 30 H 1.08998 * 109.47062 * 51.10637 * 8 6 5 31 31 H 1.08991 * 109.47122 * 171.11166 * 8 6 5 32 32 H 1.09006 * 109.46582 * 291.10878 * 8 6 5 33 33 H 1.08997 * 109.63085 * 294.11514 * 9 6 5 34 34 H 1.09009 * 109.78656 * 173.62994 * 9 6 5 35 35 H 0.97003 * 119.99967 * 179.97438 * 14 13 11 36 36 H 1.08999 * 109.63057 * 291.47853 * 19 10 9 37 37 H 1.08996 * 109.79325 * 170.99070 * 19 10 9 38 38 H 1.08997 * 109.46569 * 60.00555 * 22 20 5 39 39 H 1.09003 * 109.47119 * 180.02562 * 22 20 5 40 40 H 1.09000 * 109.47041 * 300.00308 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5309 1.1866 -0.1194 5 7 3.8764 0.6210 -1.4305 6 6 5.2833 0.1999 -1.4679 7 1 5.9273 1.0773 -1.4079 8 6 5.5705 -0.7268 -0.2848 9 6 5.5552 -0.5453 -2.7789 10 7 5.1318 0.3093 -3.8986 11 6 5.9758 0.5645 -4.9463 12 1 7.0408 0.6278 -4.7787 13 6 5.4625 0.7416 -6.2238 14 7 4.2093 0.4303 -6.4785 15 14 6.5505 1.4217 -7.5815 16 1 7.7123 0.5193 -7.7836 17 1 5.7700 1.5145 -8.8415 18 1 7.0338 2.7727 -7.1985 19 6 3.7776 0.8822 -3.8634 20 6 3.5757 1.5712 -2.5096 21 1 2.5419 1.9055 -2.4223 22 6 4.5125 2.7763 -2.4046 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.7576 1.8157 0.9294 27 1 1.6228 1.8756 -0.8444 28 1 3.9074 0.5343 0.6684 29 1 3.9815 2.1742 -0.0197 30 1 4.8250 -1.5214 -0.2564 31 1 6.5628 -1.1634 -0.3979 32 1 5.5284 -0.1556 0.6426 33 1 4.9893 -1.4767 -2.7949 34 1 6.6199 -0.7622 -2.8662 35 1 3.8506 0.5544 -7.3712 36 1 3.0408 0.0880 -3.9835 37 1 3.6643 1.6111 -4.6658 38 1 5.5461 2.4417 -2.4930 39 1 4.2888 3.4813 -3.2053 40 1 4.3698 3.2645 -1.4406 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129385352.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:55 Heat of formation + Delta-G solvation = -9.952466 kcal Electronic energy + Delta-G solvation = -19128.671203 eV Core-core repulsion = 16365.706896 eV Total energy + Delta-G solvation = -2762.964308 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.11888 -37.31846 -34.43433 -32.55574 -31.42831 -29.67156 -27.30137 -26.13019 -25.85881 -25.34011 -22.75026 -21.13100 -20.75558 -17.97677 -16.71637 -16.21361 -15.88883 -15.04080 -14.83743 -14.75901 -14.27476 -13.69670 -13.56923 -13.16126 -12.85040 -12.42638 -12.12917 -11.76431 -11.70219 -11.44845 -11.36734 -11.11450 -10.90735 -10.83129 -10.79028 -10.50329 -10.34712 -10.00147 -9.89097 -9.63081 -9.38462 -9.35090 -8.43699 -7.55952 -6.47389 -5.72068 -3.19582 3.40673 3.46026 3.46910 4.02846 4.43744 4.54328 5.23816 5.31837 5.40913 5.44497 5.49505 5.52431 5.62710 5.64943 5.71701 5.79126 5.88131 5.90791 5.95950 6.05828 6.13962 6.17296 6.30971 6.41866 6.57169 6.60074 6.63800 6.90046 6.99581 7.12130 7.33967 7.40536 7.71685 7.80779 7.85578 7.95547 8.53836 9.28994 9.90593 10.53610 11.36265 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.031098 B = 0.006973 C = 0.006453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.149528 B = 4014.753644 C = 4337.802420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.372 6.372 3 C 0.069 3.931 4 C 0.044 3.956 5 N -0.511 5.511 6 C 0.063 3.937 7 H 0.039 0.961 8 C -0.143 4.143 9 C 0.156 3.844 10 N -0.591 5.591 11 C -0.253 4.253 12 H 0.061 0.939 13 C 0.007 3.993 14 N -0.902 5.902 15 Si 0.901 3.099 16 H -0.283 1.283 17 H -0.291 1.291 18 H -0.285 1.285 19 C 0.190 3.810 20 C 0.055 3.945 21 H 0.065 0.935 22 C -0.171 4.171 23 H 0.039 0.961 24 H 0.081 0.919 25 H 0.032 0.968 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.025 0.975 34 H 0.052 0.948 35 H 0.254 0.746 36 H 0.026 0.974 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.710 2.415 12.849 13.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.290 6.290 3 C -0.009 4.009 4 C -0.084 4.084 5 N -0.235 5.235 6 C -0.046 4.046 7 H 0.057 0.943 8 C -0.201 4.201 9 C 0.030 3.970 10 N -0.313 5.313 11 C -0.383 4.383 12 H 0.078 0.922 13 C -0.192 4.192 14 N -0.546 5.546 15 Si 0.731 3.269 16 H -0.209 1.209 17 H -0.217 1.217 18 H -0.211 1.211 19 C 0.064 3.936 20 C -0.055 4.055 21 H 0.083 0.917 22 C -0.230 4.230 23 H 0.057 0.943 24 H 0.100 0.900 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -3.967 1.825 12.579 13.315 hybrid contribution 0.693 1.414 -0.635 1.698 sum -3.275 3.239 11.944 12.801 Atomic orbital electron populations 1.22681 0.82210 1.02324 0.99271 1.88008 1.18454 1.27390 1.95134 1.22567 0.94321 0.85006 0.98963 1.22239 0.93443 0.98611 0.94140 1.62173 1.20677 1.39428 1.01264 1.22204 0.88124 0.97176 0.97125 0.94321 1.21877 1.01338 0.99962 0.96952 1.20999 0.97406 0.92615 0.86006 1.43978 1.13173 1.53715 1.20455 1.19065 0.89792 1.43539 0.85873 0.92158 1.25175 0.96507 1.00466 0.97053 1.69990 1.13907 1.50138 1.20548 0.86405 0.79876 0.79107 0.81517 1.20883 1.21663 1.21105 1.20748 0.86230 0.95955 0.90683 1.22538 0.97071 0.91055 0.94833 0.91720 1.22277 1.02528 0.98837 0.99322 0.94278 0.90006 0.94984 0.94047 0.93278 0.90054 0.93851 0.91776 0.92650 0.93620 0.95732 0.92948 0.93630 0.95632 0.90268 0.91294 0.92774 0.94880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.37 -5.83 10.66 -35.23 -0.38 -6.20 16 3 C 0.07 0.96 6.06 37.16 0.23 1.19 16 4 C 0.04 0.67 4.98 -3.82 -0.02 0.65 16 5 N -0.51 -9.44 4.35 -218.42 -0.95 -10.39 16 6 C 0.06 1.17 2.24 -67.59 -0.15 1.02 16 7 H 0.04 0.74 6.10 -51.93 -0.32 0.43 16 8 C -0.14 -2.18 8.45 37.16 0.31 -1.86 16 9 C 0.16 3.46 5.97 -3.61 -0.02 3.44 16 10 N -0.59 -15.11 2.48 -172.02 -0.43 -15.53 16 11 C -0.25 -7.00 9.59 -15.06 -0.14 -7.14 16 12 H 0.06 1.65 7.86 -52.49 -0.41 1.23 16 13 C 0.01 0.20 5.01 -17.43 -0.09 0.11 16 14 N -0.90 -26.52 11.33 55.49 0.63 -25.89 16 15 Si 0.90 21.87 29.57 -169.99 -5.03 16.84 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 C 0.19 4.67 4.73 -3.61 -0.02 4.65 16 20 C 0.05 1.08 2.81 -67.59 -0.19 0.89 16 21 H 0.06 1.22 6.22 -51.93 -0.32 0.89 16 22 C -0.17 -3.18 8.42 37.16 0.31 -2.87 16 23 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.71 6.31 -51.93 -0.33 0.38 16 28 H 0.08 1.18 5.67 -51.93 -0.29 0.89 16 29 H 0.04 0.63 6.18 -51.92 -0.32 0.31 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 32 H 0.04 0.61 6.59 -51.93 -0.34 0.27 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.05 1.12 7.95 -51.92 -0.41 0.71 16 35 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 2.13 6.47 -51.93 -0.34 1.80 16 38 H 0.07 1.42 5.93 -51.93 -0.31 1.11 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.03 0.53 6.43 -51.93 -0.33 0.19 16 LS Contribution 302.24 15.07 4.55 4.55 Total: -1.00 -30.14 302.24 -6.93 -37.07 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -6.67 Total: -2.01 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 1.33 Total: 1.57 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.75 Total: -51.82 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.38 Total: -6.20 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.14 -6.93 -37.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129385352.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.114 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds