Wall clock time and date at job start Mon Mar 30 2020 04:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99962 * 2 1 4 4 C 1.53002 * 109.46961 * 184.74908 * 3 2 1 5 5 N 1.46903 * 109.46961 * 65.60283 * 4 3 2 6 6 C 1.46905 * 110.99729 * 193.27508 * 5 4 3 7 7 H 1.08996 * 109.49241 * 292.70058 * 6 5 4 8 8 C 1.53003 * 109.49451 * 52.78417 * 6 5 4 9 9 C 1.53236 * 109.33603 * 172.74246 * 6 5 4 10 10 N 1.47077 * 108.52295 * 53.82976 * 9 6 5 11 11 C 1.36938 * 120.88283 * 128.83224 * 10 9 6 12 12 H 1.07997 * 120.00306 * 327.17984 * 11 10 9 13 13 C 1.38812 * 120.00017 * 147.17124 * 11 10 9 14 14 N 1.31615 * 120.00000 * 347.74134 * 13 11 10 15 15 Si 1.86801 * 119.99888 * 167.73905 * 13 11 10 16 16 H 1.48493 * 109.47198 * 60.00456 * 15 13 11 17 17 H 1.48509 * 109.46920 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47362 * 300.00221 * 15 13 11 19 19 C 1.47075 * 118.23911 * 308.81218 * 10 9 6 20 20 C 1.46894 * 111.00591 * 68.97067 * 5 4 3 21 21 H 1.09004 * 109.49258 * 307.21626 * 20 5 4 22 22 C 1.53004 * 109.49291 * 67.26353 * 20 5 4 23 23 H 1.08999 * 109.46756 * 59.99951 * 1 2 3 24 24 H 1.09000 * 109.47282 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47106 * 300.00248 * 1 2 3 26 26 H 1.08995 * 109.47342 * 64.75161 * 3 2 1 27 27 H 1.09000 * 109.47002 * 304.75208 * 3 2 1 28 28 H 1.08991 * 109.47481 * 305.59659 * 4 3 2 29 29 H 1.09010 * 109.46891 * 185.59368 * 4 3 2 30 30 H 1.08998 * 109.47062 * 51.10637 * 8 6 5 31 31 H 1.08991 * 109.47122 * 171.11166 * 8 6 5 32 32 H 1.09006 * 109.46582 * 291.10878 * 8 6 5 33 33 H 1.08997 * 109.63085 * 294.11514 * 9 6 5 34 34 H 1.09009 * 109.78656 * 173.62994 * 9 6 5 35 35 H 0.97003 * 119.99967 * 179.97438 * 14 13 11 36 36 H 1.08999 * 109.63057 * 291.47853 * 19 10 9 37 37 H 1.08996 * 109.79325 * 170.99070 * 19 10 9 38 38 H 1.08997 * 109.46569 * 60.00555 * 22 20 5 39 39 H 1.09003 * 109.47119 * 180.02562 * 22 20 5 40 40 H 1.09000 * 109.47041 * 300.00308 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5309 1.1866 -0.1194 5 7 3.8764 0.6210 -1.4305 6 6 5.2833 0.1999 -1.4679 7 1 5.9273 1.0773 -1.4079 8 6 5.5705 -0.7268 -0.2848 9 6 5.5552 -0.5453 -2.7789 10 7 5.1318 0.3093 -3.8986 11 6 5.9758 0.5645 -4.9463 12 1 7.0408 0.6278 -4.7787 13 6 5.4625 0.7416 -6.2238 14 7 4.2093 0.4303 -6.4785 15 14 6.5505 1.4217 -7.5815 16 1 7.7123 0.5193 -7.7836 17 1 5.7700 1.5145 -8.8415 18 1 7.0338 2.7727 -7.1985 19 6 3.7776 0.8822 -3.8634 20 6 3.5757 1.5712 -2.5096 21 1 2.5419 1.9055 -2.4223 22 6 4.5125 2.7763 -2.4046 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.7576 1.8157 0.9294 27 1 1.6228 1.8756 -0.8444 28 1 3.9074 0.5343 0.6684 29 1 3.9815 2.1742 -0.0197 30 1 4.8250 -1.5214 -0.2564 31 1 6.5628 -1.1634 -0.3979 32 1 5.5284 -0.1556 0.6426 33 1 4.9893 -1.4767 -2.7949 34 1 6.6199 -0.7622 -2.8662 35 1 3.8506 0.5544 -7.3712 36 1 3.0408 0.0880 -3.9835 37 1 3.6643 1.6111 -4.6658 38 1 5.5461 2.4417 -2.4930 39 1 4.2888 3.4813 -3.2053 40 1 4.3698 3.2645 -1.4406 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129385352.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:54 Heat of formation + Delta-G solvation = -30.568392 kcal Electronic energy + Delta-G solvation = -19129.565177 eV Core-core repulsion = 16365.706896 eV Total energy + Delta-G solvation = -2763.858282 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.62784 -38.49329 -36.26013 -34.09799 -33.30126 -31.19149 -28.60717 -27.74542 -27.47207 -26.75907 -24.37878 -22.67906 -22.32691 -19.63665 -18.58078 -17.44905 -17.19170 -16.65007 -16.42987 -16.04485 -15.76990 -15.31090 -15.25947 -14.84276 -14.38228 -13.91309 -13.42032 -13.22191 -13.18106 -13.03637 -12.72020 -12.60089 -12.53029 -12.50830 -12.26192 -12.20851 -12.03222 -11.82120 -11.59562 -11.25413 -11.08466 -10.56480 -10.42931 -9.02910 -8.52627 -7.84691 -5.36836 1.46175 1.48142 1.55067 2.50916 2.97806 3.08536 3.30738 3.70028 4.08681 4.14273 4.21116 4.28682 4.41992 4.47539 4.50784 4.57544 4.59279 4.64034 4.65483 4.69953 4.78811 4.87098 4.91033 5.01293 5.07967 5.12435 5.17316 5.23174 5.36344 5.40871 5.53184 5.63912 5.69073 6.32075 6.37143 6.44370 6.52739 7.16787 7.85433 8.44338 9.21039 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.031098 B = 0.006973 C = 0.006453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.149528 B = 4014.753644 C = 4337.802420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.403 6.403 3 C 0.068 3.932 4 C 0.045 3.955 5 N -0.526 5.526 6 C 0.072 3.928 7 H 0.038 0.962 8 C -0.133 4.133 9 C 0.153 3.847 10 N -0.606 5.606 11 C -0.263 4.263 12 H 0.063 0.937 13 C -0.046 4.046 14 N -0.936 5.936 15 Si 0.968 3.032 16 H -0.275 1.275 17 H -0.294 1.294 18 H -0.277 1.277 19 C 0.201 3.799 20 C 0.066 3.934 21 H 0.076 0.924 22 C -0.159 4.159 23 H 0.035 0.965 24 H 0.088 0.912 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.041 0.959 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.005 0.995 34 H 0.055 0.945 35 H 0.250 0.750 36 H -0.014 1.014 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.045 0.955 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.172 3.421 14.953 15.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.322 6.322 3 C -0.009 4.009 4 C -0.082 4.082 5 N -0.251 5.251 6 C -0.038 4.038 7 H 0.056 0.944 8 C -0.191 4.191 9 C 0.027 3.973 10 N -0.329 5.329 11 C -0.393 4.393 12 H 0.080 0.920 13 C -0.242 4.242 14 N -0.581 5.581 15 Si 0.796 3.204 16 H -0.201 1.201 17 H -0.220 1.220 18 H -0.202 1.202 19 C 0.075 3.925 20 C -0.043 4.043 21 H 0.094 0.906 22 C -0.218 4.218 23 H 0.054 0.946 24 H 0.107 0.893 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.059 0.941 28 H 0.111 0.889 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.023 0.977 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.004 0.996 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.421 2.830 14.722 15.377 hybrid contribution 0.491 1.035 -1.253 1.698 sum -2.931 3.865 13.469 14.316 Atomic orbital electron populations 1.22831 0.80559 1.03208 1.00247 1.87953 1.20412 1.28454 1.95382 1.22633 0.93386 0.84661 1.00227 1.22353 0.94524 0.99385 0.91983 1.62089 1.20630 1.39720 1.02648 1.22040 0.88315 0.97307 0.96105 0.94392 1.21796 1.01736 0.99210 0.96350 1.21133 0.97113 0.91970 0.87085 1.44215 1.13121 1.54584 1.20993 1.19396 0.90282 1.42938 0.86720 0.91950 1.25948 0.97774 1.01142 0.99308 1.70170 1.15672 1.51612 1.20693 0.85344 0.78124 0.78655 0.78294 1.20092 1.22025 1.20244 1.20459 0.85043 0.94127 0.92891 1.22211 0.98149 0.91262 0.92712 0.90602 1.22133 1.00666 0.98034 1.00916 0.94620 0.89328 0.92594 0.90885 0.94065 0.88907 0.92306 0.92658 0.91371 0.91026 0.97744 0.92671 0.94136 0.99640 0.93373 0.93315 0.93538 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.40 -11.84 10.66 -148.98 -1.59 -13.43 16 3 C 0.07 1.71 6.06 71.98 0.44 2.14 16 4 C 0.04 1.22 4.98 86.30 0.43 1.65 16 5 N -0.53 -18.74 4.35 -844.95 -3.68 -22.41 16 6 C 0.07 2.56 2.24 44.99 0.10 2.66 16 7 H 0.04 1.38 6.10 -2.39 -0.01 1.37 16 8 C -0.13 -3.69 8.45 71.98 0.61 -3.09 16 9 C 0.15 6.83 5.97 86.35 0.52 7.35 16 10 N -0.61 -31.82 2.48 -698.16 -1.73 -33.55 16 11 C -0.26 -14.85 9.59 84.03 0.81 -14.04 16 12 H 0.06 3.43 7.86 -2.91 -0.02 3.41 16 13 C -0.05 -2.63 5.01 84.86 0.43 -2.20 16 14 N -0.94 -57.05 11.33 21.65 0.25 -56.80 16 15 Si 0.97 45.61 29.57 68.60 2.03 47.64 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 C 0.20 10.27 4.73 86.35 0.41 10.67 16 20 C 0.07 2.61 2.81 45.00 0.13 2.74 16 21 H 0.08 2.81 6.22 -2.38 -0.01 2.79 16 22 C -0.16 -5.68 8.42 71.98 0.61 -5.07 16 23 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.04 1.09 6.31 -2.39 -0.02 1.08 16 28 H 0.09 2.33 5.67 -2.39 -0.01 2.32 16 29 H 0.06 1.44 6.18 -2.38 -0.01 1.42 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.07 1.72 8.13 -2.39 -0.02 1.70 16 32 H 0.07 1.64 6.59 -2.38 -0.02 1.62 16 33 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.05 2.37 7.95 -2.38 -0.02 2.35 16 35 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 36 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 37 H 0.05 2.72 6.47 -2.39 -0.02 2.70 16 38 H 0.05 1.94 5.93 -2.39 -0.01 1.93 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 40 H 0.07 1.93 6.43 -2.39 -0.02 1.92 16 Total: -1.00 -66.74 302.24 1.99 -64.75 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.00 Total: 9.14 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 5.71 Total: 4.66 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -5.16 Total: -112.77 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -1.59 Total: -13.43 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -66.74 1.99 -64.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129385352.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.186 kcal (2) G-P(sol) polarization free energy of solvation -66.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds