Wall clock time and date at job start Mon Mar 30 2020 04:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00332 * 2 1 4 4 C 1.52996 * 109.47251 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.46940 * 72.02282 * 4 3 2 6 6 C 1.46902 * 111.00148 * 186.01864 * 5 4 3 7 7 H 1.08994 * 109.49022 * 67.29539 * 6 5 4 8 8 C 1.52997 * 109.51438 * 307.23152 * 6 5 4 9 9 C 1.53242 * 109.33911 * 187.25573 * 6 5 4 10 10 N 1.47076 * 108.52261 * 306.17448 * 9 6 5 11 11 C 1.36934 * 120.87841 * 231.18993 * 10 9 6 12 12 H 1.07998 * 120.00409 * 23.49869 * 11 10 9 13 13 C 1.38813 * 120.00011 * 203.50085 * 11 10 9 14 14 N 1.31613 * 120.00461 * 207.97389 * 13 11 10 15 15 Si 1.86807 * 119.99619 * 27.97998 * 13 11 10 16 16 H 1.48501 * 109.46765 * 269.99582 * 15 13 11 17 17 H 1.48498 * 109.46993 * 149.99771 * 15 13 11 18 18 H 1.48492 * 109.47325 * 29.99587 * 15 13 11 19 19 C 1.47080 * 118.24038 * 51.45642 * 10 9 6 20 20 C 1.46899 * 111.00054 * 310.32804 * 5 4 3 21 21 H 1.08988 * 109.49448 * 52.77949 * 20 5 4 22 22 C 1.52998 * 109.48975 * 292.69834 * 20 5 4 23 23 H 1.09004 * 109.47245 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46638 * 299.99952 * 1 2 3 25 25 H 1.09002 * 109.46912 * 59.99712 * 1 2 3 26 26 H 1.08998 * 109.46601 * 60.00014 * 3 2 1 27 27 H 1.08995 * 109.47240 * 300.00049 * 3 2 1 28 28 H 1.09000 * 109.47842 * 312.02942 * 4 3 2 29 29 H 1.08996 * 109.47402 * 192.02078 * 4 3 2 30 30 H 1.09000 * 109.47229 * 300.12118 * 8 6 5 31 31 H 1.09004 * 109.47390 * 60.12111 * 8 6 5 32 32 H 1.08997 * 109.47209 * 180.11888 * 8 6 5 33 33 H 1.09000 * 109.62471 * 186.45833 * 9 6 5 34 34 H 1.09001 * 109.78614 * 65.97732 * 9 6 5 35 35 H 0.97008 * 119.99786 * 354.94116 * 14 13 11 36 36 H 1.09002 * 109.62721 * 68.24825 * 19 10 9 37 37 H 1.08997 * 109.62869 * 188.83685 * 19 10 9 38 38 H 1.09009 * 109.46889 * 60.00269 * 22 20 5 39 39 H 1.08996 * 109.47139 * 180.02562 * 22 20 5 40 40 H 1.09000 * 109.47391 * 300.00685 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9904 0.7195 -1.3165 6 6 5.4353 0.4549 -1.3113 7 1 5.6461 -0.4002 -0.6690 8 6 6.1782 1.6843 -0.7846 9 6 5.9004 0.1490 -2.7390 10 7 5.0707 -0.9394 -3.2776 11 6 5.6446 -2.0469 -3.8426 12 1 6.6536 -2.3268 -3.5782 13 6 4.9294 -2.8099 -4.7554 14 7 5.1885 -4.0937 -4.8863 15 14 3.5992 -2.0146 -5.7983 16 1 2.2980 -2.0959 -5.0873 17 1 3.4983 -2.7254 -7.0982 18 1 3.9439 -0.5903 -6.0384 19 6 3.6083 -0.8041 -3.1986 20 6 3.2334 -0.4634 -1.7474 21 1 2.1656 -0.2532 -1.6887 22 6 3.5724 -1.6457 -0.8374 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8464 -0.8899 28 1 3.8432 0.4701 0.7642 29 1 3.9770 2.1578 0.2147 30 1 5.9664 2.5394 -1.4265 31 1 5.8471 1.9016 0.2309 32 1 7.2503 1.4880 -0.7830 33 1 6.9457 -0.1597 -2.7253 34 1 5.7890 1.0368 -3.3615 35 1 5.9272 -4.4914 -4.3993 36 1 3.2781 -0.0051 -3.8624 37 1 3.1375 -1.7434 -3.4888 38 1 3.3078 -1.4001 0.1911 39 1 3.0110 -2.5234 -1.1577 40 1 4.6402 -1.8560 -0.8975 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129385581.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:58 Heat of formation + Delta-G solvation = -2.920482 kcal Electronic energy + Delta-G solvation = -19488.429659 eV Core-core repulsion = 16725.770281 eV Total energy + Delta-G solvation = -2762.659378 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.46441 -37.46957 -34.61865 -32.56728 -31.69269 -29.95231 -27.39719 -26.42414 -25.97122 -25.23968 -22.37901 -21.46132 -20.76301 -18.27952 -17.09365 -16.60784 -16.35637 -15.24011 -15.06902 -14.64601 -14.14337 -13.92630 -13.62082 -13.15922 -12.96836 -12.57141 -12.26107 -11.96045 -11.75092 -11.61907 -11.58694 -11.52592 -11.08445 -10.86222 -10.71898 -10.40095 -10.20186 -10.10065 -9.80096 -9.68529 -9.16025 -9.07757 -8.29579 -7.72222 -6.92598 -6.17931 -3.12957 3.48712 3.62257 3.78423 3.84502 4.33350 4.67381 5.09830 5.12605 5.22786 5.34063 5.38603 5.41741 5.47494 5.51443 5.66716 5.71166 5.76829 5.86663 5.93262 5.94629 6.10368 6.15116 6.24853 6.31570 6.45319 6.48962 6.63946 6.74025 6.76950 6.87115 6.99158 7.15600 7.20172 7.68204 7.74598 8.08090 8.53419 9.16917 9.75430 10.34815 11.22341 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.023158 B = 0.009601 C = 0.007726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.815465 B = 2915.589692 C = 3623.315192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.377 6.377 3 C 0.060 3.940 4 C 0.052 3.948 5 N -0.524 5.524 6 C 0.060 3.940 7 H 0.045 0.955 8 C -0.144 4.144 9 C 0.158 3.842 10 N -0.604 5.604 11 C -0.342 4.342 12 H 0.065 0.935 13 C -0.017 4.017 14 N -0.918 5.918 15 Si 1.058 2.942 16 H -0.294 1.294 17 H -0.300 1.300 18 H -0.287 1.287 19 C 0.136 3.864 20 C 0.061 3.939 21 H 0.098 0.902 22 C -0.156 4.156 23 H 0.084 0.916 24 H 0.035 0.965 25 H 0.040 0.960 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.038 0.962 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.025 0.975 35 H 0.262 0.738 36 H 0.025 0.975 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.049 0.951 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.403 11.892 10.827 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.296 6.296 3 C -0.016 4.016 4 C -0.076 4.076 5 N -0.249 5.249 6 C -0.049 4.049 7 H 0.063 0.937 8 C -0.202 4.202 9 C 0.031 3.969 10 N -0.328 5.328 11 C -0.470 4.470 12 H 0.083 0.917 13 C -0.218 4.218 14 N -0.558 5.558 15 Si 0.890 3.110 16 H -0.222 1.222 17 H -0.228 1.228 18 H -0.213 1.213 19 C 0.010 3.990 20 C -0.048 4.048 21 H 0.115 0.885 22 C -0.215 4.215 23 H 0.102 0.898 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.503 11.761 9.336 16.786 hybrid contribution 1.137 -0.067 1.776 2.110 sum -6.365 11.694 11.112 17.341 Atomic orbital electron populations 1.22713 0.81960 1.02646 0.99574 1.88137 1.19022 1.27761 1.94667 1.22581 0.94017 0.84962 1.00088 1.22200 0.92670 1.00492 0.92206 1.62363 1.04019 1.34104 1.24429 1.22225 0.87331 0.95934 0.99436 0.93748 1.21873 0.99662 0.98516 1.00152 1.20981 0.94378 0.91029 0.90490 1.44406 1.00059 1.18865 1.69424 1.20165 1.02222 1.02775 1.21878 0.91736 1.26032 1.03107 0.95222 0.97471 1.70924 1.28656 1.08880 1.47370 0.83881 0.75403 0.75290 0.76427 1.22201 1.22827 1.21320 1.21561 0.85239 0.99048 0.93129 1.22604 0.98262 0.87804 0.96110 0.88464 1.22088 1.02061 0.98828 0.98495 0.89791 0.94598 0.94091 0.93435 0.92327 0.94350 0.89829 0.92137 0.93319 0.92601 0.92581 0.95705 0.92821 0.95747 0.90802 0.93737 0.93225 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.29 6.12 -35.23 -0.22 -5.50 16 3 C 0.06 0.75 5.56 37.16 0.21 0.96 16 4 C 0.05 0.73 4.43 -3.82 -0.02 0.72 16 5 N -0.52 -9.15 4.54 -218.15 -0.99 -10.14 16 6 C 0.06 1.08 2.22 -67.59 -0.15 0.93 16 7 H 0.04 0.87 6.10 -51.93 -0.32 0.56 16 8 C -0.14 -2.01 8.72 37.16 0.32 -1.69 16 9 C 0.16 3.37 5.97 -3.60 -0.02 3.35 16 10 N -0.60 -15.17 2.29 -171.73 -0.39 -15.57 16 11 C -0.34 -9.89 9.90 -15.06 -0.15 -10.04 16 12 H 0.06 1.98 8.04 -52.49 -0.42 1.56 16 13 C -0.02 -0.51 5.10 -17.43 -0.09 -0.60 16 14 N -0.92 -29.05 13.70 55.49 0.76 -28.29 16 15 Si 1.06 27.35 24.94 -169.99 -4.24 23.12 16 16 H -0.29 -7.16 6.46 56.52 0.37 -6.79 16 17 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 18 H -0.29 -7.22 7.10 56.52 0.40 -6.82 16 19 C 0.14 3.19 3.86 -3.36 -0.01 3.17 16 20 C 0.06 1.20 2.37 -67.35 -0.16 1.04 16 21 H 0.10 1.81 5.01 -51.94 -0.26 1.55 16 22 C -0.16 -3.13 7.87 37.16 0.29 -2.84 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.57 7.01 -51.93 -0.36 0.21 16 29 H 0.08 1.01 6.59 -51.93 -0.34 0.67 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.60 6.47 -51.93 -0.34 0.26 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.19 7.94 -51.93 -0.41 0.78 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.26 8.22 8.73 -40.82 -0.36 7.86 16 36 H 0.02 0.58 7.40 -51.93 -0.38 0.19 16 37 H 0.07 1.88 4.65 -51.93 -0.24 1.64 16 38 H 0.04 0.81 5.86 -51.92 -0.30 0.51 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.32 5.93 -51.93 -0.31 1.01 16 LS Contribution 292.29 15.07 4.40 4.40 Total: -1.00 -31.67 292.29 -6.02 -37.69 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -6.68 Total: -2.14 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 1.34 Total: -3.58 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.62 Total: -53.99 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.22 Total: -5.50 kcal Atomic # 14 Polarization: 27.35 SS G_CDS: -4.24 Total: 23.12 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.67 -6.02 -37.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129385581.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.770 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds