Wall clock time and date at job start Mon Mar 30 2020 04:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00332 * 2 1 4 4 C 1.52996 * 109.47251 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.46940 * 72.02282 * 4 3 2 6 6 C 1.46902 * 111.00148 * 186.01864 * 5 4 3 7 7 H 1.08994 * 109.49022 * 67.29539 * 6 5 4 8 8 C 1.52997 * 109.51438 * 307.23152 * 6 5 4 9 9 C 1.53242 * 109.33911 * 187.25573 * 6 5 4 10 10 N 1.47076 * 108.52261 * 306.17448 * 9 6 5 11 11 C 1.36934 * 120.87841 * 231.18993 * 10 9 6 12 12 H 1.07998 * 120.00409 * 23.49869 * 11 10 9 13 13 C 1.38813 * 120.00011 * 203.50085 * 11 10 9 14 14 N 1.31613 * 120.00461 * 207.97389 * 13 11 10 15 15 Si 1.86807 * 119.99619 * 27.97998 * 13 11 10 16 16 H 1.48501 * 109.46765 * 269.99582 * 15 13 11 17 17 H 1.48498 * 109.46993 * 149.99771 * 15 13 11 18 18 H 1.48492 * 109.47325 * 29.99587 * 15 13 11 19 19 C 1.47080 * 118.24038 * 51.45642 * 10 9 6 20 20 C 1.46899 * 111.00054 * 310.32804 * 5 4 3 21 21 H 1.08988 * 109.49448 * 52.77949 * 20 5 4 22 22 C 1.52998 * 109.48975 * 292.69834 * 20 5 4 23 23 H 1.09004 * 109.47245 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46638 * 299.99952 * 1 2 3 25 25 H 1.09002 * 109.46912 * 59.99712 * 1 2 3 26 26 H 1.08998 * 109.46601 * 60.00014 * 3 2 1 27 27 H 1.08995 * 109.47240 * 300.00049 * 3 2 1 28 28 H 1.09000 * 109.47842 * 312.02942 * 4 3 2 29 29 H 1.08996 * 109.47402 * 192.02078 * 4 3 2 30 30 H 1.09000 * 109.47229 * 300.12118 * 8 6 5 31 31 H 1.09004 * 109.47390 * 60.12111 * 8 6 5 32 32 H 1.08997 * 109.47209 * 180.11888 * 8 6 5 33 33 H 1.09000 * 109.62471 * 186.45833 * 9 6 5 34 34 H 1.09001 * 109.78614 * 65.97732 * 9 6 5 35 35 H 0.97008 * 119.99786 * 354.94116 * 14 13 11 36 36 H 1.09002 * 109.62721 * 68.24825 * 19 10 9 37 37 H 1.08997 * 109.62869 * 188.83685 * 19 10 9 38 38 H 1.09009 * 109.46889 * 60.00269 * 22 20 5 39 39 H 1.08996 * 109.47139 * 180.02562 * 22 20 5 40 40 H 1.09000 * 109.47391 * 300.00685 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9904 0.7195 -1.3165 6 6 5.4353 0.4549 -1.3113 7 1 5.6461 -0.4002 -0.6690 8 6 6.1782 1.6843 -0.7846 9 6 5.9004 0.1490 -2.7390 10 7 5.0707 -0.9394 -3.2776 11 6 5.6446 -2.0469 -3.8426 12 1 6.6536 -2.3268 -3.5782 13 6 4.9294 -2.8099 -4.7554 14 7 5.1885 -4.0937 -4.8863 15 14 3.5992 -2.0146 -5.7983 16 1 2.2980 -2.0959 -5.0873 17 1 3.4983 -2.7254 -7.0982 18 1 3.9439 -0.5903 -6.0384 19 6 3.6083 -0.8041 -3.1986 20 6 3.2334 -0.4634 -1.7474 21 1 2.1656 -0.2532 -1.6887 22 6 3.5724 -1.6457 -0.8374 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8464 -0.8899 28 1 3.8432 0.4701 0.7642 29 1 3.9770 2.1578 0.2147 30 1 5.9664 2.5394 -1.4265 31 1 5.8471 1.9016 0.2309 32 1 7.2503 1.4880 -0.7830 33 1 6.9457 -0.1597 -2.7253 34 1 5.7890 1.0368 -3.3615 35 1 5.9272 -4.4914 -4.3993 36 1 3.2781 -0.0051 -3.8624 37 1 3.1375 -1.7434 -3.4888 38 1 3.3078 -1.4001 0.1911 39 1 3.0110 -2.5234 -1.1577 40 1 4.6402 -1.8560 -0.8975 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129385581.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:58 Heat of formation + Delta-G solvation = -25.924364 kcal Electronic energy + Delta-G solvation = -19489.427182 eV Core-core repulsion = 16725.770281 eV Total energy + Delta-G solvation = -2763.656901 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.88100 -38.61150 -36.40342 -34.05314 -33.72811 -31.40839 -28.61875 -27.94749 -27.47269 -26.69650 -23.93201 -22.98782 -22.39176 -20.05367 -19.02910 -17.77054 -17.44271 -16.58182 -16.54341 -16.16766 -15.79029 -15.60106 -15.19619 -14.75934 -14.51177 -14.10745 -13.70559 -13.43871 -13.27744 -12.98973 -12.84301 -12.75900 -12.53935 -12.36853 -12.12707 -12.02177 -11.86948 -11.66419 -11.56016 -11.37539 -11.18580 -10.52461 -10.26983 -9.26720 -8.97300 -8.49279 -5.42562 1.40733 1.53924 1.73303 2.52338 2.91979 2.96897 3.10275 3.46935 4.02926 4.09619 4.14017 4.29369 4.40468 4.41702 4.45777 4.53800 4.57386 4.59817 4.67772 4.73620 4.76993 4.80806 4.87658 4.92531 4.96608 4.98036 5.07843 5.12909 5.17800 5.29305 5.38799 5.53534 5.74295 6.22301 6.26479 6.32327 6.36282 6.92467 7.61675 8.13441 8.85979 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.023158 B = 0.009601 C = 0.007726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.815465 B = 2915.589692 C = 3623.315192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.060 3.940 4 C 0.052 3.948 5 N -0.525 5.525 6 C 0.067 3.933 7 H 0.023 0.977 8 C -0.134 4.134 9 C 0.153 3.847 10 N -0.618 5.618 11 C -0.329 4.329 12 H 0.031 0.969 13 C -0.070 4.070 14 N -0.951 5.951 15 Si 1.100 2.900 16 H -0.271 1.271 17 H -0.303 1.303 18 H -0.275 1.275 19 C 0.131 3.869 20 C 0.072 3.928 21 H 0.116 0.884 22 C -0.141 4.141 23 H 0.084 0.916 24 H 0.056 0.944 25 H 0.046 0.954 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.031 0.969 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.032 0.968 35 H 0.247 0.753 36 H 0.031 0.969 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.032 0.968 40 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.067 14.842 12.261 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C -0.016 4.016 4 C -0.075 4.075 5 N -0.250 5.250 6 C -0.042 4.042 7 H 0.041 0.959 8 C -0.192 4.192 9 C 0.027 3.973 10 N -0.343 5.343 11 C -0.459 4.459 12 H 0.049 0.951 13 C -0.265 4.265 14 N -0.594 5.594 15 Si 0.927 3.073 16 H -0.197 1.197 17 H -0.232 1.232 18 H -0.200 1.200 19 C 0.006 3.994 20 C -0.037 4.037 21 H 0.133 0.867 22 C -0.200 4.200 23 H 0.102 0.898 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.049 0.951 29 H 0.130 0.870 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.051 0.949 40 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -9.170 14.757 10.814 20.465 hybrid contribution 1.723 -0.956 1.420 2.429 sum -7.448 13.801 12.234 19.890 Atomic orbital electron populations 1.22849 0.80307 1.03180 1.00848 1.88051 1.20901 1.28879 1.94846 1.22647 0.92662 0.84680 1.01624 1.22371 0.94212 1.01348 0.89603 1.62346 1.03278 1.32367 1.27052 1.22062 0.88418 0.97316 0.96436 0.95885 1.21796 0.99537 0.96422 1.01395 1.21157 0.93531 0.89837 0.92749 1.44491 1.01368 1.18947 1.69488 1.20050 1.00890 1.03835 1.21123 0.95131 1.27171 1.05737 0.94977 0.98604 1.71038 1.29356 1.10221 1.48802 0.83310 0.74427 0.74830 0.74774 1.19714 1.23159 1.20012 1.21624 0.83817 0.98023 0.95973 1.22424 0.99508 0.88474 0.93308 0.86668 1.21946 0.99559 0.98603 0.99905 0.89765 0.92564 0.93522 0.90400 0.92229 0.95059 0.87042 0.91267 0.90901 0.91918 0.93651 0.94970 0.94415 0.95128 0.93219 0.91736 0.94928 0.95406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 11.01 113.37 1.25 1.69 16 2 O -0.41 -10.10 6.12 -148.98 -0.91 -11.01 16 3 C 0.06 1.25 5.56 71.98 0.40 1.65 16 4 C 0.05 1.24 4.43 86.30 0.38 1.63 16 5 N -0.53 -16.90 4.54 -844.08 -3.83 -20.74 16 6 C 0.07 2.30 2.22 45.00 0.10 2.40 16 7 H 0.02 0.90 6.10 -2.39 -0.01 0.88 16 8 C -0.13 -3.27 8.72 71.98 0.63 -2.65 16 9 C 0.15 6.45 5.97 86.35 0.52 6.97 16 10 N -0.62 -31.30 2.29 -697.23 -1.60 -32.90 16 11 C -0.33 -19.70 9.90 84.03 0.83 -18.87 16 12 H 0.03 2.00 8.04 -2.91 -0.02 1.97 16 13 C -0.07 -4.28 5.10 84.86 0.43 -3.84 16 14 N -0.95 -62.43 13.70 21.65 0.30 -62.13 16 15 Si 1.10 55.72 24.94 68.60 1.71 57.43 16 16 H -0.27 -12.60 6.46 99.48 0.64 -11.96 16 17 H -0.30 -15.43 7.11 99.48 0.71 -14.72 16 18 H -0.27 -13.21 7.10 99.48 0.71 -12.51 16 19 C 0.13 6.01 3.86 86.51 0.33 6.34 16 20 C 0.07 2.71 2.37 45.15 0.11 2.82 16 21 H 0.12 3.99 5.01 -2.39 -0.01 3.98 16 22 C -0.14 -5.62 7.87 71.98 0.57 -5.05 16 23 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 25 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.03 0.82 7.01 -2.39 -0.02 0.80 16 29 H 0.11 2.09 6.59 -2.39 -0.02 2.08 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.46 6.47 -2.39 -0.02 1.44 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.04 1.96 7.94 -2.39 -0.02 1.94 16 34 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.25 16.34 8.73 -92.70 -0.81 15.53 16 36 H 0.03 1.38 7.40 -2.39 -0.02 1.36 16 37 H 0.05 2.51 4.65 -2.39 -0.01 2.50 16 38 H 0.06 2.27 5.86 -2.38 -0.01 2.26 16 39 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.03 1.25 5.93 -2.39 -0.01 1.23 16 Total: -1.00 -70.53 292.29 2.11 -68.42 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 0.90 Total: 7.86 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 5.55 Total: -6.92 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -5.14 Total: -115.77 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -0.91 Total: -11.01 kcal Atomic # 14 Polarization: 55.72 SS G_CDS: 1.71 Total: 57.43 kcal Total: -70.53 2.11 -68.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129385581.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.495 kcal (2) G-P(sol) polarization free energy of solvation -70.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds