Wall clock time and date at job start Mon Mar 30 2020 04:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 H 1.08999 * 109.50601 * 305.09048 * 5 4 2 7 7 C 1.53093 * 109.50774 * 185.00152 * 5 4 2 8 8 O 1.43013 * 109.26048 * 183.21724 * 7 5 4 9 9 C 1.43020 * 113.73891 * 58.66635 * 8 7 5 10 10 C 1.53098 * 109.25950 * 301.33278 * 9 8 7 11 11 N 1.47008 * 109.50676 * 65.21899 * 5 4 2 12 12 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 13 13 C 1.46907 * 110.99769 * 306.04832 * 12 2 1 14 14 C 1.46896 * 111.00152 * 69.99914 * 12 2 1 15 15 C 1.50706 * 109.47293 * 170.00150 * 14 12 2 16 16 H 1.08003 * 119.99552 * 0.02562 * 15 14 12 17 17 C 1.37871 * 119.99706 * 180.02562 * 15 14 12 18 18 N 1.31513 * 120.00377 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99837 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47079 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47255 * 119.99388 * 19 17 15 22 22 H 1.48492 * 109.47127 * 239.99943 * 19 17 15 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 27 27 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 28 28 H 1.09000 * 109.50496 * 303.15038 * 7 5 4 29 29 H 1.09003 * 109.50716 * 63.23929 * 7 5 4 30 30 H 1.08995 * 109.50231 * 61.26919 * 9 8 7 31 31 H 1.08998 * 109.50645 * 181.35473 * 9 8 7 32 32 H 1.09002 * 109.50896 * 176.77600 * 10 9 8 33 33 H 1.08995 * 109.50667 * 296.86956 * 10 9 8 34 34 H 1.00904 * 111.00203 * 302.33255 * 11 5 4 35 35 H 1.08995 * 109.47407 * 59.99898 * 13 12 2 36 36 H 1.09006 * 109.46770 * 179.97438 * 13 12 2 37 37 H 1.09003 * 109.46848 * 299.99626 * 13 12 2 38 38 H 1.09006 * 109.47466 * 290.00215 * 14 12 2 39 39 H 1.09000 * 109.46995 * 50.00413 * 14 12 2 40 40 H 0.97004 * 120.00259 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 1 3.9959 -0.9907 0.3866 7 6 4.0863 -1.4386 2.4931 8 8 5.5033 -1.2740 2.5941 9 6 5.9138 0.0840 2.7751 10 6 5.4108 0.9247 1.5986 11 7 3.9500 0.7934 1.4984 12 7 2.0198 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7530 0.0972 -2.4090 15 6 2.4776 -0.5164 -3.5794 16 1 3.0760 -1.4044 -3.4387 17 6 2.3765 0.0560 -4.8296 18 7 1.6474 1.1370 -5.0010 19 14 3.2740 -0.7049 -6.2805 20 1 4.0192 -1.9066 -5.8267 21 1 2.2898 -1.0962 -7.3214 22 1 4.2268 0.2833 -6.8466 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6053 -0.2617 2.1370 27 1 1.7516 -1.7715 1.2056 28 1 3.6136 -1.0966 3.4139 29 1 3.8519 -2.4910 2.3328 30 1 5.4943 0.4702 3.7041 31 1 7.0018 0.1326 2.8191 32 1 5.6720 1.9705 1.7606 33 1 5.8727 0.5728 0.6762 34 1 3.5854 1.3688 0.7540 35 1 0.3491 -1.9550 -1.3693 36 1 1.8134 -2.5258 -2.2045 37 1 1.7060 -2.6221 -0.4301 38 1 0.6815 0.1052 -2.6088 39 1 2.1026 1.1188 -2.2604 40 1 1.5766 1.5399 -5.8805 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166221926.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:48 Heat of formation + Delta-G solvation = -65.660440 kcal Electronic energy + Delta-G solvation = -18588.897695 eV Core-core repulsion = 15823.517708 eV Total energy + Delta-G solvation = -2765.379987 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.58366 -39.11090 -35.92389 -34.84342 -33.32976 -31.46610 -29.05698 -28.13541 -27.12677 -26.65665 -24.13302 -23.16157 -21.23673 -20.17767 -18.54902 -17.81356 -17.16025 -16.99972 -16.43807 -15.87012 -15.77021 -15.50047 -15.27444 -15.00601 -14.69156 -14.25006 -13.92400 -13.76552 -13.30415 -13.02985 -12.76111 -12.69466 -12.60518 -12.31449 -12.22576 -12.07501 -12.00287 -11.78723 -11.53208 -11.34449 -11.18504 -10.62872 -10.57287 -9.43215 -8.86980 -8.21599 -6.31148 1.37618 1.38527 1.51676 2.38127 2.95167 3.10627 3.19366 3.42558 3.73313 4.05066 4.10559 4.27485 4.31778 4.35429 4.38015 4.50908 4.56243 4.64697 4.71773 4.73494 4.78645 4.89746 4.95159 4.97736 4.99522 5.09457 5.15808 5.24075 5.32437 5.39540 5.44980 5.65218 6.01507 6.07302 6.23256 6.29474 6.38468 6.71489 6.86915 7.38709 8.89122 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024166 B = 0.006252 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.358444 B = 4477.831977 C = 5002.207207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.076 3.924 3 H 0.062 0.938 4 C -0.086 4.086 5 C 0.059 3.941 6 H 0.033 0.967 7 C 0.070 3.930 8 O -0.408 6.408 9 C 0.064 3.936 10 C 0.017 3.983 11 N -0.683 5.683 12 N -0.538 5.538 13 C 0.035 3.965 14 C 0.211 3.789 15 C -0.520 4.520 16 H 0.059 0.941 17 C 0.002 3.998 18 N -0.934 5.934 19 Si 0.965 3.035 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.279 1.279 23 H 0.077 0.923 24 H 0.028 0.972 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.019 0.981 34 H 0.342 0.658 35 H 0.018 0.982 36 H 0.049 0.951 37 H 0.079 0.921 38 H -0.034 1.034 39 H -0.003 1.003 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.229 -3.071 15.702 16.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.033 4.033 3 H 0.080 0.920 4 C -0.124 4.124 5 C -0.051 4.051 6 H 0.051 0.949 7 C -0.006 4.006 8 O -0.327 6.327 9 C -0.013 4.013 10 C -0.113 4.113 11 N -0.316 5.316 12 N -0.261 5.261 13 C -0.113 4.113 14 C 0.085 3.915 15 C -0.559 4.559 16 H 0.077 0.923 17 C -0.196 4.196 18 N -0.575 5.575 19 Si 0.790 3.210 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.205 1.205 23 H 0.096 0.904 24 H 0.047 0.953 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.122 0.878 30 H 0.085 0.915 31 H 0.130 0.870 32 H 0.118 0.882 33 H 0.038 0.962 34 H 0.160 0.840 35 H 0.037 0.963 36 H 0.067 0.933 37 H 0.098 0.902 38 H -0.017 1.017 39 H 0.015 0.985 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.731 -3.177 16.296 17.016 hybrid contribution -0.598 0.330 -2.383 2.479 sum 3.133 -2.847 13.912 14.542 Atomic orbital electron populations 1.22346 0.97394 1.02206 1.01487 1.21753 0.92974 0.97664 0.90952 0.92010 1.21512 0.93255 1.01230 0.96429 1.22010 0.96445 0.89103 0.97518 0.94900 1.22784 0.80453 1.00401 0.96993 1.87935 1.23401 1.27532 1.93859 1.22784 1.00726 0.80952 0.96801 1.22660 0.88519 1.02002 0.98114 1.60816 1.10869 1.08525 1.51346 1.62236 1.58072 1.03284 1.02554 1.22266 0.96394 0.91001 1.01652 1.19307 0.92669 0.92126 0.87415 1.21520 1.29183 1.11825 0.93360 0.92291 1.25870 0.96372 0.95481 1.01900 1.70087 1.41498 1.21902 1.24013 0.85397 0.78334 0.78550 0.78720 1.18970 1.20329 1.20483 0.90382 0.95300 0.91765 0.89503 0.90327 0.91474 0.87813 0.91520 0.87040 0.88222 0.96232 0.83973 0.96344 0.93253 0.90215 1.01681 0.98472 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.49 8.44 71.98 0.61 -4.88 16 2 C 0.08 2.53 2.19 44.92 0.10 2.62 16 3 H 0.06 2.22 6.30 -2.39 -0.02 2.20 16 4 C -0.09 -2.25 4.28 30.59 0.13 -2.12 16 5 C 0.06 1.67 2.63 44.93 0.12 1.79 16 6 H 0.03 1.18 7.62 -2.39 -0.02 1.16 16 7 C 0.07 1.70 6.29 72.01 0.45 2.15 16 8 O -0.41 -11.04 10.83 -148.98 -1.61 -12.65 16 9 C 0.06 1.40 7.01 72.01 0.50 1.90 16 10 C 0.02 0.42 6.76 86.31 0.58 1.00 16 11 N -0.68 -18.74 6.56 -490.72 -3.22 -21.96 16 12 N -0.54 -22.38 4.07 -901.58 -3.67 -26.05 16 13 C 0.04 1.31 8.60 127.69 1.10 2.41 16 14 C 0.21 11.19 4.29 85.56 0.37 11.55 16 15 C -0.52 -29.70 8.46 25.60 0.22 -29.49 16 16 H 0.06 3.34 7.12 -2.91 -0.02 3.32 16 17 C 0.00 0.09 5.46 84.65 0.46 0.55 16 18 N -0.93 -56.62 13.29 21.44 0.28 -56.34 16 19 Si 0.97 44.86 29.54 68.60 2.03 46.88 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.03 1.06 6.91 -2.39 -0.02 1.05 16 25 H 0.06 1.88 6.33 -2.39 -0.02 1.87 16 26 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.08 1.89 6.34 -2.39 -0.02 1.87 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.34 10.35 7.04 -89.69 -0.63 9.72 16 35 H 0.02 0.67 6.21 -2.39 -0.01 0.66 16 36 H 0.05 2.05 6.76 -2.38 -0.02 2.04 16 37 H 0.08 2.42 6.37 -2.39 -0.02 2.41 16 38 H -0.03 -1.98 7.06 -2.38 -0.02 -2.00 16 39 H 0.00 -0.16 7.93 -2.39 -0.02 -0.18 16 40 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -64.81 305.46 -1.17 -65.98 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.38 Total: 16.64 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 4.64 Total: -12.50 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -6.61 Total: -104.35 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -1.61 Total: -12.65 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -64.81 -1.17 -65.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166221926.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.320 kcal (2) G-P(sol) polarization free energy of solvation -64.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds