Wall clock time and date at job start Mon Mar 30 2020 04:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46752 * 2 1 4 4 C 1.53002 * 109.47167 * 239.99786 * 2 1 3 5 5 C 1.52998 * 109.47470 * 63.07070 * 4 2 1 6 6 H 1.09005 * 109.49935 * 304.98761 * 5 4 2 7 7 C 1.53091 * 109.50526 * 184.90134 * 5 4 2 8 8 O 1.43021 * 109.25254 * 183.26422 * 7 5 4 9 9 C 1.43009 * 113.78220 * 58.59731 * 8 7 5 10 10 C 1.53102 * 109.25871 * 301.35914 * 9 8 7 11 11 N 1.47009 * 109.50467 * 65.06972 * 5 4 2 12 12 N 1.46903 * 109.46651 * 119.99767 * 2 1 3 13 13 C 1.46899 * 110.99619 * 173.59833 * 12 2 1 14 14 C 1.46903 * 110.99814 * 297.54773 * 12 2 1 15 15 C 1.50696 * 109.47127 * 170.00214 * 14 12 2 16 16 H 1.08006 * 119.99726 * 0.02562 * 15 14 12 17 17 C 1.37866 * 120.00314 * 179.97438 * 15 14 12 18 18 N 1.31517 * 120.00186 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99947 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47122 * 89.99799 * 19 17 15 21 21 H 1.48501 * 109.47099 * 209.99823 * 19 17 15 22 22 H 1.48492 * 109.47045 * 329.99595 * 19 17 15 23 23 H 1.08996 * 109.47243 * 300.00635 * 1 2 3 24 24 H 1.09002 * 109.46470 * 60.00553 * 1 2 3 25 25 H 1.08997 * 109.47091 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46735 * 183.07423 * 4 2 1 27 27 H 1.09000 * 109.46668 * 303.06811 * 4 2 1 28 28 H 1.08996 * 109.50877 * 303.14652 * 7 5 4 29 29 H 1.08998 * 109.51047 * 63.28285 * 7 5 4 30 30 H 1.08996 * 109.51483 * 181.42087 * 9 8 7 31 31 H 1.09006 * 109.50510 * 61.28609 * 9 8 7 32 32 H 1.09006 * 109.50167 * 296.90820 * 10 9 8 33 33 H 1.08998 * 109.50697 * 176.78179 * 10 9 8 34 34 H 1.00897 * 111.00560 * 302.32587 * 11 5 4 35 35 H 1.08996 * 109.46926 * 176.64313 * 13 12 2 36 36 H 1.09002 * 109.47360 * 296.64129 * 13 12 2 37 37 H 1.09001 * 109.47435 * 56.64560 * 13 12 2 38 38 H 1.09003 * 109.47127 * 290.00424 * 14 12 2 39 39 H 1.09004 * 109.46840 * 50.00338 * 14 12 2 40 40 H 0.97000 * 120.00023 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5942 0.0431 -2.4973 6 1 0.5115 0.1683 -2.4799 7 6 1.9981 -0.7412 -3.7485 8 8 1.6472 0.0133 -4.9118 9 6 2.2597 1.3043 -4.9683 10 6 1.8575 2.1087 -3.7293 11 7 2.2407 1.3631 -2.5216 12 7 2.0196 -0.6925 1.1995 13 6 3.4800 -0.8459 1.1595 14 6 1.5970 0.0068 2.4204 15 6 1.9003 -0.8515 3.6214 16 1 2.3613 -1.8194 3.4908 17 6 1.5902 -0.4007 4.8868 18 7 1.8545 -1.1499 5.9349 19 14 0.7936 1.2738 5.1127 20 1 -0.6837 1.1286 5.0721 21 1 1.1992 1.8423 6.4233 22 1 1.2319 2.1816 4.0224 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1287 -0.7692 -1.2220 27 1 1.6325 -1.7319 -1.2770 28 1 3.0743 -0.9136 -3.7384 29 1 1.4758 -1.6978 -3.7630 30 1 1.9266 1.8264 -5.8651 31 1 3.3437 1.1921 -4.9931 32 1 0.7790 2.2670 -3.7325 33 1 2.3674 3.0721 -3.7394 34 1 2.0224 1.8881 -1.6881 35 1 3.8223 -1.3078 2.0855 36 1 3.7561 -1.4773 0.3149 37 1 3.9454 0.1334 1.0484 38 1 2.1354 0.9509 2.5032 39 1 0.5256 0.2023 2.3747 40 1 1.6367 -0.8326 6.8253 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166222047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:54 Heat of formation + Delta-G solvation = -37.202479 kcal Electronic energy + Delta-G solvation = -18355.386742 eV Core-core repulsion = 15591.240785 eV Total energy + Delta-G solvation = -2764.145957 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.74589 -37.68212 -35.01763 -33.06808 -32.15127 -30.27466 -28.37887 -27.11881 -25.83947 -24.44110 -23.17505 -21.33409 -20.27939 -19.09966 -17.18804 -16.82929 -16.20073 -15.49499 -15.27214 -14.77229 -14.52559 -14.29773 -14.10400 -13.95880 -13.27557 -12.95910 -12.40834 -12.36655 -12.10076 -11.87953 -11.60928 -11.27424 -11.25623 -10.94413 -10.89853 -10.72530 -10.52124 -10.38389 -10.00070 -9.91175 -9.64697 -9.24281 -8.59709 -8.55804 -7.33843 -6.04957 -4.01649 3.27155 3.34806 3.36421 3.67599 3.95019 4.41569 4.54444 4.78088 4.81117 4.97083 5.03015 5.11318 5.25898 5.28955 5.40402 5.44640 5.49207 5.58571 5.67699 5.73852 5.82980 5.96903 6.10678 6.17515 6.24630 6.30252 6.46315 6.61582 6.74608 6.79437 6.90728 6.96913 7.02523 7.13905 7.62174 7.93404 8.08500 8.67372 9.03976 9.57093 11.08294 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.044436 B = 0.004996 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.972510 B = 5603.525533 C = 5860.349659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.079 3.921 3 H 0.029 0.971 4 C -0.107 4.107 5 C 0.051 3.949 6 H 0.052 0.948 7 C 0.068 3.932 8 O -0.388 6.388 9 C 0.063 3.937 10 C 0.020 3.980 11 N -0.684 5.684 12 N -0.525 5.525 13 C 0.034 3.966 14 C 0.159 3.841 15 C -0.507 4.507 16 H 0.081 0.919 17 C 0.068 3.932 18 N -0.901 5.901 19 Si 0.873 3.127 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.269 1.269 23 H 0.059 0.941 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.037 0.963 33 H 0.083 0.917 34 H 0.348 0.652 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.010 0.990 38 H -0.014 1.014 39 H 0.028 0.972 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.118 5.407 -19.443 20.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 H 0.046 0.954 4 C -0.145 4.145 5 C -0.060 4.060 6 H 0.070 0.930 7 C -0.009 4.009 8 O -0.307 6.307 9 C -0.014 4.014 10 C -0.110 4.110 11 N -0.319 5.319 12 N -0.250 5.250 13 C -0.114 4.114 14 C 0.033 3.967 15 C -0.546 4.546 16 H 0.099 0.901 17 C -0.133 4.133 18 N -0.540 5.540 19 Si 0.701 3.299 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.194 1.194 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.168 0.832 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.029 0.971 38 H 0.003 0.997 39 H 0.046 0.954 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.119 4.628 -19.638 20.177 hybrid contribution -0.837 2.174 0.817 2.469 sum -0.718 6.802 -18.822 20.026 Atomic orbital electron populations 1.21949 0.95226 1.02598 1.00701 1.21552 0.95195 0.95098 0.91135 0.95364 1.21694 1.01981 0.99157 0.91648 1.22261 0.97166 0.90280 0.96260 0.92983 1.22732 1.00470 0.94185 0.83472 1.87963 1.71280 1.28519 1.42911 1.22639 0.97760 0.83831 0.97183 1.22593 0.99061 0.97713 0.91651 1.60639 1.62000 1.04346 1.04888 1.61996 1.11173 1.50422 1.01387 1.22290 0.88132 0.98754 1.02261 1.20238 0.95466 0.92871 0.88166 1.21049 1.40310 1.04647 0.88562 0.90130 1.24891 0.95542 0.96956 0.95940 1.69894 1.48447 1.37280 0.98405 0.86891 0.80155 0.85244 0.77651 1.20163 1.21193 1.19359 0.92193 0.93562 0.91679 0.90605 0.90451 0.92319 0.88421 0.88815 0.92419 0.94442 0.89856 0.83166 0.90225 0.92987 0.97120 0.99662 0.95433 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.78 37.16 0.33 -1.97 16 2 C 0.08 1.31 2.00 -67.71 -0.14 1.17 16 3 H 0.03 0.48 6.59 -51.93 -0.34 0.13 16 4 C -0.11 -1.45 4.04 -26.73 -0.11 -1.56 16 5 C 0.05 0.61 2.52 -67.61 -0.17 0.44 16 6 H 0.05 0.65 6.28 -51.93 -0.33 0.33 16 7 C 0.07 0.77 6.30 37.20 0.23 1.00 16 8 O -0.39 -4.67 10.82 -35.23 -0.38 -5.05 16 9 C 0.06 0.61 7.01 37.21 0.26 0.87 16 10 C 0.02 0.19 6.76 -3.71 -0.03 0.17 16 11 N -0.68 -8.00 6.56 -106.45 -0.70 -8.70 16 12 N -0.53 -10.84 4.62 -236.32 -1.09 -11.93 16 13 C 0.03 0.65 8.78 60.06 0.53 1.18 16 14 C 0.16 3.84 3.63 -4.98 -0.02 3.83 16 15 C -0.51 -14.43 8.96 -34.45 -0.31 -14.74 16 16 H 0.08 2.49 7.40 -52.48 -0.39 2.10 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 18 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 19 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 23 H 0.06 1.02 6.26 -51.93 -0.32 0.70 16 24 H 0.05 0.61 6.40 -51.93 -0.33 0.27 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.08 1.06 6.22 -51.93 -0.32 0.74 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.35 4.17 7.07 -39.29 -0.28 3.89 16 35 H 0.08 1.71 6.69 -51.93 -0.35 1.36 16 36 H 0.05 0.85 6.35 -51.93 -0.33 0.52 16 37 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 38 H -0.01 -0.35 7.18 -51.93 -0.37 -0.73 16 39 H 0.03 0.67 5.35 -51.93 -0.28 0.39 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 301.80 15.07 4.55 4.55 Total: -1.00 -30.79 301.80 -7.65 -38.43 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.61 Total: 0.46 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 0.48 Total: -7.74 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -1.02 Total: -47.51 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.38 Total: -5.05 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.79 -7.65 -38.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166222047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.231 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds