Wall clock time and date at job start Mon Mar 30 2020 04:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47231 * 2 1 4 4 C 1.52999 * 109.47556 * 120.01114 * 2 1 3 5 5 C 1.53004 * 109.46730 * 294.66421 * 4 2 1 6 6 H 1.09002 * 109.50859 * 56.55506 * 5 4 2 7 7 C 1.53097 * 109.50670 * 176.64359 * 5 4 2 8 8 O 1.43015 * 109.25687 * 176.78022 * 7 5 4 9 9 C 1.43016 * 113.74191 * 301.32991 * 8 7 5 10 10 C 1.53096 * 109.25608 * 58.66936 * 9 8 7 11 11 N 1.47009 * 109.25982 * 303.15479 * 10 9 8 12 12 N 1.46898 * 109.46735 * 240.00760 * 2 1 3 13 13 C 1.46897 * 111.00434 * 186.31091 * 12 2 1 14 14 C 1.46900 * 111.00387 * 62.35628 * 12 2 1 15 15 C 1.50693 * 109.47646 * 190.00103 * 14 12 2 16 16 H 1.08006 * 120.00296 * 0.02562 * 15 14 12 17 17 C 1.37885 * 120.00430 * 180.02562 * 15 14 12 18 18 N 1.31507 * 119.99589 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00001 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47334 * 59.99828 * 19 17 15 21 21 H 1.48503 * 109.46749 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47343 * 299.99541 * 19 17 15 23 23 H 1.08997 * 109.47461 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46942 * 299.99281 * 1 2 3 25 25 H 1.09003 * 109.47290 * 59.98828 * 1 2 3 26 26 H 1.09003 * 109.47008 * 54.66007 * 4 2 1 27 27 H 1.08998 * 109.47139 * 174.66542 * 4 2 1 28 28 H 1.08993 * 109.50496 * 296.72017 * 7 5 4 29 29 H 1.09006 * 109.50541 * 56.84976 * 7 5 4 30 30 H 1.08994 * 109.50859 * 178.60807 * 9 8 7 31 31 H 1.08998 * 109.50341 * 298.73853 * 9 8 7 32 32 H 1.09002 * 109.50856 * 63.08723 * 10 9 8 33 33 H 1.08997 * 109.50730 * 183.21594 * 10 9 8 34 34 H 1.00902 * 111.00039 * 294.83198 * 11 10 9 35 35 H 1.09000 * 109.47104 * 67.07783 * 13 12 2 36 36 H 1.09007 * 109.47017 * 307.08537 * 13 12 2 37 37 H 1.08993 * 109.47805 * 187.08420 * 13 12 2 38 38 H 1.09007 * 109.47064 * 310.00208 * 14 12 2 39 39 H 1.09006 * 109.47151 * 69.99839 * 14 12 2 40 40 H 0.97004 * 120.00462 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7215 1.2491 5 6 1.6426 0.0729 2.4948 6 1 0.5612 0.2093 2.5099 7 6 2.0791 -0.6899 3.7484 8 8 1.7727 0.0913 4.9065 9 6 2.4005 1.3762 4.9169 10 6 1.9672 2.1599 3.6752 11 7 2.3035 1.3859 2.4715 12 7 2.0196 -0.6923 -1.1995 13 6 3.4802 -0.8440 -1.1607 14 6 1.5951 0.0057 -2.4204 15 6 1.8986 -0.8527 -3.6212 16 1 2.3602 -1.8204 -3.4906 17 6 1.5869 -0.4029 -4.8869 18 7 1.0244 0.7751 -5.0459 19 14 1.9637 -1.4668 -6.3753 20 1 1.2320 -2.7541 -6.2618 21 1 1.5345 -0.7611 -7.6094 22 1 3.4237 -1.7311 -6.4380 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5140 -0.8899 26 1 1.6008 -1.7179 1.2980 27 1 3.1259 -0.8049 1.2025 28 1 1.5480 -1.6403 3.7994 29 1 3.1527 -0.8739 3.7071 30 1 2.1018 1.9200 5.8131 31 1 3.4834 1.2522 4.9096 32 1 0.8911 2.3303 3.7094 33 1 2.4873 3.1174 3.6493 34 1 3.3027 1.2860 2.3732 35 1 3.7532 -1.5274 -0.3567 36 1 3.9417 0.1276 -0.9841 37 1 3.8294 -1.2445 -2.1123 38 1 0.5235 0.1998 -2.3741 39 1 2.1322 0.9505 -2.5042 40 1 0.8047 1.0915 -5.9362 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166222179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:57 Heat of formation + Delta-G solvation = -42.092492 kcal Electronic energy + Delta-G solvation = -18291.938353 eV Core-core repulsion = 15527.580349 eV Total energy + Delta-G solvation = -2764.358004 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.86353 -37.44677 -34.88403 -33.06076 -32.11307 -30.12558 -27.84855 -26.67611 -25.60788 -24.33758 -23.13370 -21.65829 -20.78236 -18.97165 -16.54715 -16.39384 -16.08201 -15.50303 -15.40827 -15.11012 -14.54328 -14.33747 -13.88565 -13.39020 -12.87523 -12.69109 -12.42841 -11.92767 -11.90192 -11.72623 -11.47104 -11.25262 -11.10677 -10.97467 -10.78603 -10.69559 -10.42925 -10.37711 -10.23483 -10.03953 -9.53951 -9.11535 -8.36091 -8.28007 -7.08853 -5.96728 -3.97412 3.36470 3.40378 3.43385 3.63127 4.04333 4.45108 4.56021 4.78004 4.84232 4.93550 5.06655 5.17373 5.34871 5.38313 5.42280 5.48252 5.59487 5.66943 5.75747 5.88849 6.08612 6.17595 6.27305 6.32456 6.35779 6.54091 6.75406 6.82179 6.86585 6.90358 6.94428 7.23175 7.43831 7.46516 7.87844 8.20885 8.32308 8.66580 9.10315 9.66040 11.14079 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.053765 B = 0.004531 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.662918 B = 6178.457068 C = 6311.138838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.088 3.912 3 H 0.044 0.956 4 C -0.106 4.106 5 C 0.053 3.947 6 H 0.095 0.905 7 C 0.026 3.974 8 O -0.383 6.383 9 C 0.020 3.980 10 C 0.022 3.978 11 N -0.673 5.673 12 N -0.540 5.540 13 C 0.036 3.964 14 C 0.191 3.809 15 C -0.506 4.506 16 H 0.061 0.939 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.897 3.103 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.278 1.278 23 H 0.054 0.946 24 H 0.046 0.954 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.339 0.661 35 H 0.044 0.956 36 H 0.008 0.992 37 H 0.073 0.927 38 H 0.036 0.964 39 H -0.012 1.012 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.029 0.583 17.762 18.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.020 4.020 3 H 0.062 0.938 4 C -0.144 4.144 5 C -0.057 4.057 6 H 0.113 0.887 7 C -0.052 4.052 8 O -0.302 6.302 9 C -0.058 4.058 10 C -0.108 4.108 11 N -0.303 5.303 12 N -0.265 5.265 13 C -0.113 4.113 14 C 0.066 3.934 15 C -0.545 4.545 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.725 3.275 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.204 1.204 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.067 0.933 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.157 0.843 35 H 0.063 0.937 36 H 0.026 0.974 37 H 0.091 0.909 38 H 0.054 0.946 39 H 0.005 0.995 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.132 0.480 17.343 17.480 hybrid contribution 1.282 -0.014 -0.394 1.342 sum 3.414 0.466 16.949 17.295 Atomic orbital electron populations 1.21860 0.95318 1.01628 1.01027 1.21399 0.95195 0.95818 0.89635 0.93820 1.21692 1.00976 0.98814 0.92886 1.22341 1.00694 0.88551 0.94151 0.88727 1.23370 1.00116 0.95318 0.86396 1.88044 1.72226 1.27889 1.42014 1.23296 0.96743 0.85421 1.00379 1.22656 1.02865 0.97189 0.88071 1.60839 1.14562 1.17112 1.37784 1.62165 1.10126 1.51567 1.02632 1.22231 0.89323 0.98136 1.01596 1.19759 0.96289 0.92120 0.85257 1.21164 1.39640 1.03316 0.90367 0.92046 1.24983 0.95487 0.95160 0.99009 1.69952 1.42710 1.18527 1.22716 0.86588 0.78625 0.80458 0.81871 1.20217 1.21411 1.20364 0.92673 0.93475 0.91989 0.90787 0.91907 0.88240 0.93270 0.88629 0.93404 0.89935 0.89749 0.84300 0.93728 0.97382 0.90857 0.94629 0.99454 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.82 37.16 0.33 -2.16 16 2 C 0.09 1.59 2.06 -67.71 -0.14 1.45 16 3 H 0.04 0.86 7.56 -51.93 -0.39 0.47 16 4 C -0.11 -1.48 4.03 -26.73 -0.11 -1.59 16 5 C 0.05 0.65 2.48 -67.60 -0.17 0.48 16 6 H 0.09 1.25 6.42 -51.93 -0.33 0.92 16 7 C 0.03 0.29 6.29 37.21 0.23 0.52 16 8 O -0.38 -4.57 10.83 -35.23 -0.38 -4.95 16 9 C 0.02 0.19 7.01 37.21 0.26 0.45 16 10 C 0.02 0.22 6.76 -3.71 -0.03 0.19 16 11 N -0.67 -7.98 5.89 -106.46 -0.63 -8.61 16 12 N -0.54 -11.75 4.62 -236.33 -1.09 -12.85 16 13 C 0.04 0.70 8.71 60.06 0.52 1.23 16 14 C 0.19 5.06 4.56 -4.98 -0.02 5.04 16 15 C -0.51 -14.42 8.35 -34.44 -0.29 -14.71 16 16 H 0.06 1.73 7.19 -52.48 -0.38 1.35 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 19 Si 0.90 21.88 29.54 -169.99 -5.02 16.85 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.05 0.72 6.50 -51.93 -0.34 0.38 16 25 H 0.06 1.24 6.25 -51.93 -0.32 0.91 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.86 6.17 -51.93 -0.32 0.54 16 28 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.34 3.76 8.79 -39.29 -0.35 3.41 16 35 H 0.04 0.74 6.54 -51.93 -0.34 0.40 16 36 H 0.01 0.15 8.11 -51.93 -0.42 -0.27 16 37 H 0.07 1.57 6.63 -51.93 -0.34 1.22 16 38 H 0.04 1.00 5.92 -51.92 -0.31 0.69 16 39 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 307.69 15.07 4.64 4.64 Total: -1.00 -30.76 307.69 -8.03 -38.79 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.78 Total: 0.10 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 0.50 Total: -7.62 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.98 Total: -47.80 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.38 Total: -4.95 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.76 -8.03 -38.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166222179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.300 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds