Wall clock time and date at job start Mon Mar 30 2020 04:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52999 * 109.47054 * 174.99886 * 4 2 1 6 6 H 1.09004 * 109.50724 * 55.08793 * 5 4 2 7 7 C 1.53096 * 109.50804 * 175.21455 * 5 4 2 8 8 O 1.43016 * 109.26304 * 176.78194 * 7 5 4 9 9 C 1.43012 * 113.73709 * 301.33404 * 8 7 5 10 10 C 1.53100 * 109.26274 * 58.66538 * 9 8 7 11 11 N 1.47011 * 109.25586 * 303.15481 * 10 9 8 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46902 * 110.99790 * 58.95192 * 12 2 1 14 14 C 1.46896 * 111.00342 * 295.00322 * 12 2 1 15 15 C 1.50695 * 109.47619 * 189.99958 * 14 12 2 16 16 H 1.07997 * 119.99832 * 359.97438 * 15 14 12 17 17 C 1.37878 * 120.00118 * 180.02562 * 15 14 12 18 18 N 1.31519 * 120.00181 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99904 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46956 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47216 * 119.99809 * 19 17 15 22 22 H 1.48506 * 109.46942 * 239.99795 * 19 17 15 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 27 27 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 28 28 H 1.08996 * 109.50747 * 296.72417 * 7 5 4 29 29 H 1.08999 * 109.50339 * 56.84479 * 7 5 4 30 30 H 1.09001 * 109.50464 * 298.73295 * 9 8 7 31 31 H 1.08999 * 109.50723 * 178.60479 * 9 8 7 32 32 H 1.08992 * 109.51036 * 183.21277 * 10 9 8 33 33 H 1.09002 * 109.49993 * 63.08379 * 10 9 8 34 34 H 1.00897 * 110.99895 * 294.83425 * 11 10 9 35 35 H 1.09003 * 109.46808 * 60.00632 * 13 12 2 36 36 H 1.09004 * 109.47176 * 180.02562 * 13 12 2 37 37 H 1.08994 * 109.47263 * 300.00333 * 13 12 2 38 38 H 1.09006 * 109.46837 * 310.00141 * 14 12 2 39 39 H 1.09003 * 109.47200 * 69.99229 * 14 12 2 40 40 H 0.97000 * 119.99590 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 1 3.9961 -0.9935 -0.3878 7 6 4.0860 -1.4340 -2.4964 8 8 5.5030 -1.2692 -2.5971 9 6 5.9136 0.0894 -2.7730 10 6 5.4110 0.9257 -1.5932 11 7 3.9502 0.7942 -1.4931 12 7 2.0197 -0.6925 1.1993 13 6 1.5283 -2.0761 1.2458 14 6 1.6488 0.0390 2.4180 15 6 2.3680 -0.5572 3.6004 16 1 3.0338 -1.3960 3.4607 17 6 2.1753 -0.0326 4.8608 18 7 1.3641 0.9886 5.0312 19 14 3.0663 -0.7722 6.3267 20 1 3.9135 -1.9037 5.8716 21 1 3.9215 0.2634 6.9602 22 1 2.0719 -1.2646 7.3136 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.7517 -1.7714 -1.2057 27 1 1.6054 -0.2616 -2.1371 28 1 3.8521 -2.4870 -2.3397 29 1 3.6131 -1.0885 -3.4157 30 1 5.4939 0.4792 -3.7004 31 1 7.0016 0.1381 -2.8164 32 1 5.6723 1.9720 -1.7512 33 1 5.8724 0.5697 -0.6721 34 1 3.4950 1.1937 -2.3002 35 1 1.8763 -2.6150 0.3646 36 1 1.9054 -2.5656 2.1438 37 1 0.4386 -2.0742 1.2638 38 1 1.9297 1.0869 2.3125 39 1 0.5723 -0.0346 2.5725 40 1 1.2289 1.3578 5.9179 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166222291.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:00 Heat of formation + Delta-G solvation = -64.824438 kcal Electronic energy + Delta-G solvation = -18568.994184 eV Core-core repulsion = 15803.650448 eV Total energy + Delta-G solvation = -2765.343735 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.70823 -39.09722 -35.86413 -34.81666 -33.31809 -31.45355 -29.06928 -28.00614 -26.87418 -26.56301 -24.10944 -23.13220 -21.82984 -20.21629 -18.52420 -17.20124 -17.11278 -16.98651 -16.42366 -16.21401 -15.84044 -15.71770 -15.19875 -15.03933 -14.28466 -13.96653 -13.87227 -13.56451 -13.24168 -12.98494 -12.80983 -12.66271 -12.59355 -12.30445 -12.21166 -12.06215 -11.95922 -11.79487 -11.63338 -11.33119 -11.15124 -11.05639 -10.58958 -9.02715 -8.78224 -8.17438 -6.26897 1.39669 1.40579 1.54112 2.41374 2.92468 3.14417 3.27069 3.50805 3.72172 4.03641 4.13372 4.21189 4.21720 4.36206 4.42197 4.55481 4.60707 4.64147 4.71547 4.72821 4.80506 4.83758 4.96919 4.99886 5.07191 5.10870 5.20069 5.28670 5.41107 5.48558 5.50265 5.69639 6.07449 6.13258 6.18358 6.47937 6.59122 6.81619 6.92011 7.42643 8.93435 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025052 B = 0.006114 C = 0.005519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.407754 B = 4578.257389 C = 5072.584394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.085 3.915 3 H 0.066 0.934 4 C -0.089 4.089 5 C 0.067 3.933 6 H 0.068 0.932 7 C 0.031 3.969 8 O -0.406 6.406 9 C 0.023 3.977 10 C 0.025 3.975 11 N -0.686 5.686 12 N -0.534 5.534 13 C 0.034 3.966 14 C 0.214 3.786 15 C -0.519 4.519 16 H 0.059 0.941 17 C -0.001 4.001 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.265 1.265 21 H -0.279 1.279 22 H -0.278 1.278 23 H 0.025 0.975 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.345 0.655 35 H 0.080 0.920 36 H 0.047 0.953 37 H 0.015 0.985 38 H -0.007 1.007 39 H -0.035 1.035 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.911 -2.820 -17.659 18.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.023 4.023 3 H 0.085 0.915 4 C -0.127 4.127 5 C -0.043 4.043 6 H 0.087 0.913 7 C -0.047 4.047 8 O -0.326 6.326 9 C -0.055 4.055 10 C -0.105 4.105 11 N -0.316 5.316 12 N -0.258 5.258 13 C -0.114 4.114 14 C 0.087 3.913 15 C -0.557 4.557 16 H 0.078 0.922 17 C -0.198 4.198 18 N -0.577 5.577 19 Si 0.792 3.208 20 H -0.189 1.189 21 H -0.205 1.205 22 H -0.203 1.203 23 H 0.044 0.956 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.119 0.881 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.164 0.836 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.033 0.967 38 H 0.011 0.989 39 H -0.018 1.018 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.470 -2.724 -16.862 17.656 hybrid contribution -0.697 -0.042 0.474 0.844 sum 3.773 -2.766 -16.388 17.043 Atomic orbital electron populations 1.22398 0.98170 1.01824 1.01341 1.21633 0.91818 0.98358 0.90538 0.91544 1.21554 0.93330 1.01191 0.96656 1.21992 0.96273 0.88013 0.98039 0.91335 1.23375 0.81180 1.02204 0.97978 1.88012 1.23174 1.27282 1.94082 1.23392 1.01832 0.82422 0.97819 1.22615 0.88371 1.01386 0.98108 1.60693 1.07309 1.16991 1.46628 1.62174 1.59027 1.02402 1.02188 1.22276 0.96808 0.90650 1.01646 1.19258 0.92107 0.92448 0.87453 1.21543 1.25903 1.15845 0.92406 0.92249 1.25903 0.96288 0.95524 1.02102 1.70104 1.38511 1.25610 1.23492 0.85374 0.78365 0.78466 0.78644 1.18883 1.20493 1.20320 0.95572 0.92217 0.90391 0.90373 0.89596 0.88052 0.91531 0.91648 0.87389 0.88135 0.92423 0.83632 0.90138 0.93367 0.96698 0.98890 1.01785 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.83 8.50 71.98 0.61 -5.22 16 2 C 0.09 2.97 2.29 44.92 0.10 3.07 16 3 H 0.07 2.59 7.51 -2.39 -0.02 2.57 16 4 C -0.09 -2.25 4.10 30.60 0.13 -2.13 16 5 C 0.07 1.79 2.57 44.93 0.12 1.91 16 6 H 0.07 2.44 7.62 -2.38 -0.02 2.42 16 7 C 0.03 0.68 6.29 72.01 0.45 1.13 16 8 O -0.41 -10.39 10.83 -148.98 -1.61 -12.00 16 9 C 0.02 0.46 7.00 72.02 0.50 0.97 16 10 C 0.02 0.58 6.76 86.32 0.58 1.16 16 11 N -0.69 -17.60 5.96 -490.72 -2.92 -20.53 16 12 N -0.53 -23.16 4.12 -901.63 -3.71 -26.87 16 13 C 0.03 1.32 8.64 127.69 1.10 2.42 16 14 C 0.21 11.76 4.16 85.56 0.36 12.12 16 15 C -0.52 -30.40 8.46 25.60 0.22 -30.19 16 16 H 0.06 3.44 7.12 -2.91 -0.02 3.42 16 17 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 18 N -0.94 -58.05 13.29 21.45 0.28 -57.76 16 19 Si 0.97 45.71 29.54 68.60 2.03 47.74 16 20 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H 0.03 1.01 6.75 -2.39 -0.02 1.00 16 24 H 0.06 1.83 6.39 -2.39 -0.02 1.82 16 25 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 26 H 0.08 1.83 6.17 -2.39 -0.01 1.82 16 27 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 34 H 0.34 7.09 8.79 -89.70 -0.79 6.30 16 35 H 0.08 2.49 6.22 -2.39 -0.01 2.47 16 36 H 0.05 2.05 6.76 -2.38 -0.02 2.03 16 37 H 0.01 0.56 6.28 -2.39 -0.02 0.54 16 38 H -0.01 -0.43 8.00 -2.38 -0.02 -0.45 16 39 H -0.04 -2.10 6.94 -2.39 -0.02 -2.12 16 40 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -68.67 307.30 -1.08 -69.75 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.22 Total: 14.00 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 4.63 Total: -14.33 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -6.35 Total: -105.16 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -1.61 Total: -12.00 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -68.67 -1.08 -69.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166222291.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.922 kcal (2) G-P(sol) polarization free energy of solvation -68.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds