Wall clock time and date at job start Mon Mar 30 2020 05:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46981 * 2 1 4 4 N 1.46905 * 109.47034 * 240.00054 * 2 1 3 5 5 C 1.52998 * 109.47258 * 120.00200 * 2 1 3 6 6 H 1.08999 * 109.50453 * 299.99862 * 5 2 1 7 7 C 1.53100 * 109.50907 * 179.91573 * 5 2 1 8 8 N 1.47017 * 109.25731 * 183.26013 * 7 5 2 9 9 C 1.46895 * 110.99922 * 182.34773 * 8 7 5 10 10 C 1.53002 * 109.47367 * 170.27468 * 9 8 7 11 11 C 1.52998 * 109.47251 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47064 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99937 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00131 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99871 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00412 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47162 * 89.99920 * 16 14 12 18 18 H 1.48503 * 109.47683 * 210.00422 * 16 14 12 19 19 H 1.48508 * 109.47074 * 330.00168 * 16 14 12 20 20 C 1.47018 * 110.78801 * 58.54728 * 8 7 5 21 21 C 1.53097 * 109.25598 * 301.40458 * 20 8 7 22 22 O 1.43016 * 109.50785 * 60.08482 * 5 2 1 23 23 H 1.09001 * 109.47204 * 59.99768 * 1 2 3 24 24 H 1.09002 * 109.46981 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46856 * 299.99919 * 1 2 3 26 26 H 1.00901 * 110.99869 * 60.00199 * 4 2 1 27 27 H 1.00896 * 110.99543 * 183.95322 * 4 2 1 28 28 H 1.09003 * 109.50291 * 303.14802 * 7 5 2 29 29 H 1.08999 * 109.50690 * 63.27376 * 7 5 2 30 30 H 1.09004 * 109.46862 * 290.27166 * 9 8 7 31 31 H 1.09000 * 109.47378 * 50.27189 * 9 8 7 32 32 H 1.09002 * 109.46374 * 299.99681 * 10 9 8 33 33 H 1.09000 * 109.47099 * 59.99551 * 10 9 8 34 34 H 1.08996 * 109.47079 * 299.99891 * 11 10 9 35 35 H 1.09004 * 109.47207 * 59.99303 * 11 10 9 36 36 H 0.97000 * 119.99855 * 180.02562 * 15 14 12 37 37 H 1.09006 * 109.50338 * 181.47869 * 20 8 7 38 38 H 1.08990 * 109.50733 * 61.34452 * 20 8 7 39 39 H 1.08998 * 109.51216 * 296.91631 * 21 20 8 40 40 H 1.08998 * 109.54166 * 176.80579 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0400 -0.7213 1.2492 6 1 1.6770 -0.2079 2.1396 7 6 3.5710 -0.7236 1.2490 8 7 4.0549 -1.4850 2.4098 9 6 5.5221 -1.4649 2.4781 10 6 5.9786 -2.0523 3.8151 11 6 7.5068 -2.0307 3.8864 12 6 7.9564 -2.6086 5.2035 13 1 7.2253 -2.9569 5.9181 14 6 9.3011 -2.6938 5.4959 15 7 10.1914 -2.2702 4.6255 16 14 9.8584 -3.4108 7.1282 17 1 10.0505 -4.8764 6.9854 18 1 11.1406 -2.7808 7.5338 19 1 8.8273 -3.1453 8.1634 20 6 3.5478 -2.8646 2.3771 21 6 2.0171 -2.8398 2.3667 22 8 1.5654 -2.0704 1.2489 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6961 -0.2349 -2.0386 27 1 3.0261 -0.7626 -1.1909 28 1 3.9341 -1.1887 0.3324 29 1 3.9365 0.3016 1.3071 30 1 5.9320 -2.0592 1.6613 31 1 5.8758 -0.4374 2.3929 32 1 5.5687 -1.4580 4.6317 33 1 5.6249 -3.0797 3.9002 34 1 7.9170 -2.6246 3.0697 35 1 7.8601 -1.0031 3.8013 36 1 11.1374 -2.3305 4.8311 37 1 3.8971 -3.4017 3.2591 38 1 3.9099 -3.3642 1.4787 39 1 1.6540 -2.3882 3.2899 40 1 1.6365 -3.8579 2.2853 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169176150.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:03 Heat of formation + Delta-G solvation = -55.406441 kcal Electronic energy + Delta-G solvation = -17914.294369 eV Core-core repulsion = 15149.359029 eV Total energy + Delta-G solvation = -2764.935340 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -39.79150 -36.53061 -35.45290 -33.53176 -31.38299 -30.54798 -29.14519 -27.87013 -25.47984 -23.98908 -22.74979 -20.95775 -20.03454 -19.83407 -16.65667 -16.54857 -16.15740 -15.83834 -15.01061 -14.78692 -14.77747 -14.39096 -14.08860 -13.71713 -13.59682 -13.04294 -12.31748 -12.16806 -11.96762 -11.76596 -11.71792 -11.39498 -11.26010 -11.11865 -10.83827 -10.58030 -10.47915 -10.35317 -9.62678 -9.57024 -9.29455 -9.02834 -8.82202 -8.34110 -8.13736 -5.99405 -4.01516 3.32459 3.38536 3.42290 3.73705 3.97792 4.33551 4.47225 4.69065 4.77762 5.07628 5.13591 5.17347 5.23465 5.36394 5.38595 5.41292 5.57745 5.65456 5.70032 5.78370 5.83420 5.91565 5.98309 6.09170 6.15809 6.28463 6.67136 6.73140 6.93702 7.08338 7.22339 7.25793 7.31556 7.33066 7.68321 7.82932 8.00832 8.44131 9.05613 9.62494 11.12086 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.054522 B = 0.003936 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.432913 B = 7112.830523 C = 7398.351111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.096 3.904 3 H 0.046 0.954 4 N -0.838 5.838 5 C 0.101 3.899 6 H 0.067 0.933 7 C 0.020 3.980 8 N -0.536 5.536 9 C 0.056 3.944 10 C -0.104 4.104 11 C 0.022 3.978 12 C -0.518 4.518 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.016 3.984 21 C 0.063 3.937 22 O -0.364 6.364 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.337 0.663 27 H 0.341 0.659 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.013 0.987 35 H 0.015 0.985 36 H 0.260 0.740 37 H 0.092 0.908 38 H 0.040 0.960 39 H 0.055 0.945 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.437 4.069 -9.354 20.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.016 4.016 3 H 0.064 0.936 4 N -0.370 5.370 5 C 0.042 3.958 6 H 0.085 0.915 7 C -0.108 4.108 8 N -0.261 5.261 9 C -0.071 4.071 10 C -0.142 4.142 11 C -0.016 4.016 12 C -0.557 4.557 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.112 4.112 21 C -0.014 4.014 22 O -0.282 6.282 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.150 0.850 27 H 0.155 0.845 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.110 0.890 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.964 3.623 -8.821 20.338 hybrid contribution 1.595 0.229 0.151 1.619 sum -16.369 3.851 -8.671 18.919 Atomic orbital electron populations 1.21724 0.93839 1.03249 1.01046 1.21340 0.96312 0.94126 0.89792 0.93640 1.58674 1.16387 1.58403 1.03526 1.22168 0.92237 0.84358 0.97024 0.91530 1.22791 0.95810 0.99347 0.92893 1.62278 1.11382 1.12766 1.39665 1.22319 0.84382 1.01064 0.99298 1.21652 0.99511 0.99048 0.94016 1.19072 0.88419 0.97142 0.96948 1.21245 0.91687 1.40527 1.02210 0.92673 1.25032 0.96920 0.95627 0.96958 1.69969 1.01151 1.47363 1.35146 0.86591 0.78091 0.79186 0.84120 1.20688 1.21239 1.19840 1.22815 0.95812 0.90429 1.02168 1.22666 0.93070 0.96145 0.89558 1.88048 1.72154 1.22215 1.45805 0.93050 0.90882 0.92400 0.85004 0.84471 0.93956 0.90371 0.95211 0.91219 0.92594 0.93438 0.96833 0.96626 0.93037 0.89009 0.94179 0.92674 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.34 37.16 0.35 -0.92 16 2 C 0.10 0.94 3.28 -67.71 -0.22 0.72 16 3 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 4 N -0.84 -8.12 9.09 -4.66 -0.04 -8.16 16 5 C 0.10 1.20 2.62 -26.68 -0.07 1.14 16 6 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 7 C 0.02 0.27 4.68 -3.71 -0.02 0.25 16 8 N -0.54 -8.27 4.73 -234.30 -1.11 -9.38 16 9 C 0.06 1.00 4.96 -3.83 -0.02 0.98 16 10 C -0.10 -2.19 5.08 -26.73 -0.14 -2.33 16 11 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 12 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 16 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 C 0.02 0.23 5.44 -3.71 -0.02 0.21 16 21 C 0.06 0.79 7.01 37.21 0.26 1.05 16 22 O -0.36 -4.89 9.66 -35.23 -0.34 -5.23 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.78 7.69 -51.93 -0.40 0.38 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.34 2.57 9.04 -39.29 -0.36 2.22 16 27 H 0.34 3.28 6.97 -39.29 -0.27 3.01 16 28 H 0.04 0.56 6.42 -51.93 -0.33 0.23 16 29 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 30 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 31 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 0.98 6.51 -51.93 -0.34 0.64 16 34 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.09 1.37 6.37 -51.93 -0.33 1.03 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 314.29 15.07 4.74 4.74 Total: -1.00 -31.06 314.29 -8.52 -39.58 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -7.06 Total: 0.26 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -0.43 Total: -12.15 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: -0.41 Total: -44.02 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.34 Total: -5.23 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.06 -8.52 -39.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169176150.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.827 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds