Wall clock time and date at job start Mon Mar 30 2020 05:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46981 * 2 1 4 4 N 1.46905 * 109.47034 * 240.00054 * 2 1 3 5 5 C 1.52998 * 109.47258 * 120.00200 * 2 1 3 6 6 H 1.08999 * 109.50453 * 299.99862 * 5 2 1 7 7 C 1.53100 * 109.50907 * 179.91573 * 5 2 1 8 8 N 1.47017 * 109.25731 * 183.26013 * 7 5 2 9 9 C 1.46895 * 110.99922 * 182.34773 * 8 7 5 10 10 C 1.53002 * 109.47367 * 170.27468 * 9 8 7 11 11 C 1.52998 * 109.47251 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47064 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99937 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00131 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99871 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00412 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47162 * 89.99920 * 16 14 12 18 18 H 1.48503 * 109.47683 * 210.00422 * 16 14 12 19 19 H 1.48508 * 109.47074 * 330.00168 * 16 14 12 20 20 C 1.47018 * 110.78801 * 58.54728 * 8 7 5 21 21 C 1.53097 * 109.25598 * 301.40458 * 20 8 7 22 22 O 1.43016 * 109.50785 * 60.08482 * 5 2 1 23 23 H 1.09001 * 109.47204 * 59.99768 * 1 2 3 24 24 H 1.09002 * 109.46981 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46856 * 299.99919 * 1 2 3 26 26 H 1.00901 * 110.99869 * 60.00199 * 4 2 1 27 27 H 1.00896 * 110.99543 * 183.95322 * 4 2 1 28 28 H 1.09003 * 109.50291 * 303.14802 * 7 5 2 29 29 H 1.08999 * 109.50690 * 63.27376 * 7 5 2 30 30 H 1.09004 * 109.46862 * 290.27166 * 9 8 7 31 31 H 1.09000 * 109.47378 * 50.27189 * 9 8 7 32 32 H 1.09002 * 109.46374 * 299.99681 * 10 9 8 33 33 H 1.09000 * 109.47099 * 59.99551 * 10 9 8 34 34 H 1.08996 * 109.47079 * 299.99891 * 11 10 9 35 35 H 1.09004 * 109.47207 * 59.99303 * 11 10 9 36 36 H 0.97000 * 119.99855 * 180.02562 * 15 14 12 37 37 H 1.09006 * 109.50338 * 181.47869 * 20 8 7 38 38 H 1.08990 * 109.50733 * 61.34452 * 20 8 7 39 39 H 1.08998 * 109.51216 * 296.91631 * 21 20 8 40 40 H 1.08998 * 109.54166 * 176.80579 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0400 -0.7213 1.2492 6 1 1.6770 -0.2079 2.1396 7 6 3.5710 -0.7236 1.2490 8 7 4.0549 -1.4850 2.4098 9 6 5.5221 -1.4649 2.4781 10 6 5.9786 -2.0523 3.8151 11 6 7.5068 -2.0307 3.8864 12 6 7.9564 -2.6086 5.2035 13 1 7.2253 -2.9569 5.9181 14 6 9.3011 -2.6938 5.4959 15 7 10.1914 -2.2702 4.6255 16 14 9.8584 -3.4108 7.1282 17 1 10.0505 -4.8764 6.9854 18 1 11.1406 -2.7808 7.5338 19 1 8.8273 -3.1453 8.1634 20 6 3.5478 -2.8646 2.3771 21 6 2.0171 -2.8398 2.3667 22 8 1.5654 -2.0704 1.2489 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6961 -0.2349 -2.0386 27 1 3.0261 -0.7626 -1.1909 28 1 3.9341 -1.1887 0.3324 29 1 3.9365 0.3016 1.3071 30 1 5.9320 -2.0592 1.6613 31 1 5.8758 -0.4374 2.3929 32 1 5.5687 -1.4580 4.6317 33 1 5.6249 -3.0797 3.9002 34 1 7.9170 -2.6246 3.0697 35 1 7.8601 -1.0031 3.8013 36 1 11.1374 -2.3305 4.8311 37 1 3.8971 -3.4017 3.2591 38 1 3.9099 -3.3642 1.4787 39 1 1.6540 -2.3882 3.2899 40 1 1.6365 -3.8579 2.2853 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169176150.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:03 Heat of formation + Delta-G solvation = -78.377036 kcal Electronic energy + Delta-G solvation = -17915.290449 eV Core-core repulsion = 15149.359029 eV Total energy + Delta-G solvation = -2765.931420 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.84120 -37.73922 -36.41517 -35.47873 -33.25431 -31.53527 -29.89742 -29.43558 -27.08050 -25.05266 -24.38667 -22.28595 -21.39597 -20.96623 -18.51961 -17.54250 -17.36921 -16.92507 -16.52390 -16.27620 -15.86351 -15.63899 -15.10838 -15.03127 -14.85380 -14.26900 -14.06868 -13.67461 -13.15518 -12.91499 -12.84710 -12.70507 -12.67589 -12.46322 -12.40277 -12.23047 -11.90227 -11.59134 -11.40751 -11.32704 -11.09312 -10.56708 -10.48023 -9.55483 -9.37389 -8.21254 -6.32388 1.39692 1.41103 1.52455 2.40083 2.73495 2.86699 3.11951 3.61004 3.74052 3.90310 4.02203 4.08151 4.14626 4.26153 4.29426 4.42800 4.48955 4.58483 4.63421 4.67470 4.78995 4.85125 4.90722 4.97899 5.01447 5.04648 5.10527 5.23109 5.42877 5.49996 5.70931 5.83876 5.95262 6.01285 6.16718 6.25139 6.38240 6.60972 6.84257 7.36962 8.90744 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.054522 B = 0.003936 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.432913 B = 7112.830523 C = 7398.351111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.097 3.903 3 H 0.062 0.938 4 N -0.848 5.848 5 C 0.101 3.899 6 H 0.068 0.932 7 C 0.021 3.979 8 N -0.541 5.541 9 C 0.068 3.932 10 C -0.088 4.088 11 C 0.026 3.974 12 C -0.543 4.543 13 H 0.059 0.941 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.263 1.263 20 C 0.015 3.985 21 C 0.067 3.933 22 O -0.375 6.375 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.349 0.651 27 H 0.340 0.660 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.023 0.977 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.050 0.950 34 H -0.011 1.011 35 H -0.007 1.007 36 H 0.264 0.736 37 H 0.085 0.915 38 H 0.032 0.968 39 H 0.059 0.941 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.664 4.152 -8.932 21.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.014 4.014 3 H 0.080 0.920 4 N -0.381 5.381 5 C 0.042 3.958 6 H 0.086 0.914 7 C -0.107 4.107 8 N -0.265 5.265 9 C -0.059 4.059 10 C -0.126 4.126 11 C -0.012 4.012 12 C -0.581 4.581 13 H 0.078 0.922 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.790 3.210 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.187 1.187 20 C -0.113 4.113 21 C -0.010 4.010 22 O -0.293 6.293 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.163 0.837 27 H 0.154 0.846 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.041 0.959 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.007 0.993 35 H 0.011 0.989 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -19.218 3.710 -8.413 21.304 hybrid contribution 1.970 0.220 -0.027 1.983 sum -17.248 3.930 -8.440 19.600 Atomic orbital electron populations 1.21685 0.93179 1.02346 1.02217 1.21366 0.96779 0.94482 0.88809 0.92043 1.58661 1.16407 1.58931 1.04145 1.22287 0.91179 0.83993 0.98332 0.91447 1.22869 0.96775 0.99353 0.91719 1.62228 1.09461 1.13643 1.41209 1.22040 0.86277 1.00618 0.97001 1.21386 0.95794 0.99537 0.95915 1.18967 0.91861 0.94977 0.95367 1.21681 0.92322 1.40858 1.03229 0.92242 1.25997 0.97022 0.95856 1.01024 1.70098 1.01610 1.48369 1.37349 0.85432 0.77765 0.78540 0.79226 1.19734 1.20669 1.18707 1.22855 0.97336 0.89704 1.01399 1.22709 0.91401 0.97266 0.89649 1.88048 1.72207 1.22932 1.46117 0.91556 0.92739 0.91619 0.83678 0.84585 0.94095 0.89434 0.95880 0.91090 0.92839 0.93130 0.99252 0.98901 0.92747 0.89710 0.95007 0.92232 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.34 71.98 0.67 -1.50 16 2 C 0.10 1.70 3.28 44.91 0.15 1.85 16 3 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 4 N -0.85 -14.99 9.09 -168.67 -1.53 -16.53 16 5 C 0.10 2.23 2.62 30.63 0.08 2.31 16 6 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 7 C 0.02 0.52 4.68 86.31 0.40 0.93 16 8 N -0.54 -16.23 4.73 -895.20 -4.23 -20.47 16 9 C 0.07 2.42 4.96 86.30 0.43 2.85 16 10 C -0.09 -3.74 5.08 30.59 0.16 -3.59 16 11 C 0.03 1.39 4.97 29.85 0.15 1.54 16 12 C -0.54 -31.44 9.11 25.60 0.23 -31.21 16 13 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 14 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 15 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 16 Si 0.97 44.65 29.54 68.60 2.03 46.67 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 20 C 0.02 0.43 5.44 86.31 0.47 0.90 16 21 C 0.07 1.57 7.01 72.01 0.50 2.08 16 22 O -0.37 -9.47 9.66 -148.98 -1.44 -10.91 16 23 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.05 1.08 7.69 -2.39 -0.02 1.06 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.35 4.66 9.04 -89.69 -0.81 3.85 16 27 H 0.34 6.08 6.97 -89.70 -0.63 5.46 16 28 H 0.04 1.04 6.42 -2.39 -0.02 1.02 16 29 H 0.09 1.99 8.09 -2.39 -0.02 1.98 16 30 H 0.02 0.84 8.12 -2.38 -0.02 0.82 16 31 H 0.07 2.48 8.04 -2.39 -0.02 2.46 16 32 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.05 2.09 6.51 -2.39 -0.02 2.07 16 34 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 35 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 36 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.08 2.48 6.37 -2.38 -0.02 2.46 16 38 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -65.90 314.29 -1.61 -67.52 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -0.42 Total: 14.33 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 3.71 Total: -23.47 kcal Atomic # 7 Polarization: -88.66 SS G_CDS: -5.48 Total: -94.14 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -1.44 Total: -10.91 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -65.90 -1.61 -67.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169176150.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.859 kcal (2) G-P(sol) polarization free energy of solvation -65.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds