Wall clock time and date at job start Mon Mar 30 2020 05:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47111 * 2 1 4 4 N 1.46907 * 109.47129 * 119.99711 * 2 1 3 5 5 C 1.52997 * 109.47258 * 239.99831 * 2 1 3 6 6 H 1.09002 * 109.54073 * 300.10739 * 5 2 1 7 7 C 1.53101 * 109.50898 * 180.02562 * 5 2 1 8 8 N 1.47013 * 109.25858 * 183.21578 * 7 5 2 9 9 C 1.46901 * 110.99794 * 182.39039 * 8 7 5 10 10 C 1.53000 * 109.46769 * 169.99933 * 9 8 7 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46838 * 89.99826 * 16 14 12 18 18 H 1.48497 * 109.47419 * 209.99978 * 16 14 12 19 19 H 1.48499 * 109.47011 * 330.00539 * 16 14 12 20 20 C 1.47009 * 110.74985 * 58.61529 * 8 7 5 21 21 C 1.53093 * 109.26143 * 301.38034 * 20 8 7 22 22 O 1.43012 * 109.50615 * 60.21595 * 5 2 1 23 23 H 1.08995 * 109.47214 * 60.00162 * 1 2 3 24 24 H 1.09003 * 109.47111 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47406 * 300.00132 * 1 2 3 26 26 H 1.00896 * 111.00075 * 176.04688 * 4 2 1 27 27 H 1.00898 * 111.00196 * 300.00551 * 4 2 1 28 28 H 1.08997 * 109.50212 * 63.27874 * 7 5 2 29 29 H 1.08999 * 109.54077 * 303.17311 * 7 5 2 30 30 H 1.09001 * 109.46874 * 50.00213 * 9 8 7 31 31 H 1.08992 * 109.47407 * 290.00231 * 9 8 7 32 32 H 1.09002 * 109.47398 * 300.00295 * 10 9 8 33 33 H 1.09001 * 109.47194 * 60.00475 * 10 9 8 34 34 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 35 35 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 36 36 H 0.97002 * 119.99731 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.50659 * 61.32248 * 20 8 7 38 38 H 1.09003 * 109.50478 * 181.44413 * 20 8 7 39 39 H 1.08993 * 109.51187 * 296.91622 * 21 20 8 40 40 H 1.09003 * 109.54522 * 176.80253 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0400 -0.7213 -1.2492 6 1 1.6757 -1.7486 -1.2513 7 6 3.5710 -0.7223 -1.2497 8 7 4.0551 -1.3479 -2.4889 9 6 5.5222 -1.4202 -2.5038 10 6 5.9779 -2.2910 -3.6764 11 6 7.5060 -2.3669 -3.6916 12 6 7.9550 -3.2241 -4.8468 13 1 7.2236 -3.6698 -5.5048 14 6 9.2994 -3.4385 -5.0646 15 7 10.1900 -2.8953 -4.2637 16 14 9.8560 -4.5016 -6.4962 17 1 10.0507 -3.6510 -7.6979 18 1 11.1364 -5.1686 -6.1491 19 1 8.8230 -5.5300 -6.7800 20 6 3.5511 -0.6277 -3.6672 21 6 2.0203 -0.6277 -3.6426 22 8 1.5679 -0.0448 -2.4174 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 3.0262 -0.7625 1.1910 27 1 1.6961 -0.2350 2.0386 28 1 3.9348 -1.2864 -0.3909 29 1 3.9363 0.3031 -1.1928 30 1 5.8739 -1.8566 -1.5689 31 1 5.9344 -0.4173 -2.6143 32 1 5.5658 -3.2940 -3.5659 33 1 5.6262 -1.8546 -4.6112 34 1 7.9185 -1.3640 -3.8018 35 1 7.8574 -2.8035 -2.7567 36 1 11.1360 -3.0458 -4.4171 37 1 3.9155 0.3994 -3.6494 38 1 3.9005 -1.1228 -4.5733 39 1 1.6551 -1.6521 -3.7145 40 1 1.6421 -0.0465 -4.4836 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169176233.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:08 Heat of formation + Delta-G solvation = -57.609716 kcal Electronic energy + Delta-G solvation = -17859.279170 eV Core-core repulsion = 15094.248289 eV Total energy + Delta-G solvation = -2765.030881 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.83747 -36.55747 -35.67024 -33.54626 -31.38901 -30.63007 -29.10504 -27.85834 -25.45623 -24.06071 -22.70290 -20.90391 -20.29205 -19.82476 -16.90317 -16.61184 -16.14035 -15.68837 -15.13779 -14.77641 -14.66254 -14.42756 -14.27210 -13.73915 -13.68567 -13.11809 -12.32984 -12.18308 -11.96746 -11.80442 -11.65461 -11.48006 -11.28098 -11.14797 -10.84487 -10.59485 -10.49188 -10.40706 -9.67521 -9.61350 -9.30431 -9.03746 -8.96419 -8.34120 -8.17042 -5.99392 -4.01497 3.32460 3.38603 3.42458 3.50756 3.94897 4.42614 4.47301 4.67060 4.83320 4.99307 5.06315 5.19179 5.26149 5.36164 5.37021 5.40707 5.56267 5.67678 5.71334 5.77655 5.82125 5.89091 5.94027 6.05385 6.09737 6.27712 6.66446 6.72031 6.83965 7.06197 7.09922 7.19319 7.27635 7.29898 7.68285 7.82825 8.00811 8.44076 9.05607 9.62517 11.12100 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.048933 B = 0.003972 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.068776 B = 7047.368668 C = 7423.015645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.097 3.903 3 H 0.040 0.960 4 N -0.844 5.844 5 C 0.101 3.899 6 H 0.075 0.925 7 C 0.022 3.978 8 N -0.535 5.535 9 C 0.056 3.944 10 C -0.104 4.104 11 C 0.022 3.978 12 C -0.518 4.518 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.014 3.986 21 C 0.067 3.933 22 O -0.385 6.385 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.344 0.656 27 H 0.345 0.655 28 H 0.085 0.915 29 H 0.034 0.966 30 H 0.071 0.929 31 H 0.029 0.971 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.013 0.987 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.038 0.962 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.382 6.917 7.644 20.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.015 4.015 3 H 0.058 0.942 4 N -0.377 5.377 5 C 0.042 3.958 6 H 0.093 0.907 7 C -0.107 4.107 8 N -0.259 5.259 9 C -0.071 4.071 10 C -0.142 4.142 11 C -0.016 4.016 12 C -0.557 4.557 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.114 4.114 21 C -0.010 4.010 22 O -0.303 6.303 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.158 0.842 27 H 0.158 0.842 28 H 0.104 0.896 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.031 0.969 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.112 0.888 39 H 0.077 0.923 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.911 5.992 7.382 20.278 hybrid contribution 1.589 0.969 -0.559 1.943 sum -16.322 6.961 6.823 19.011 Atomic orbital electron populations 1.21738 0.93706 1.02585 1.01700 1.21151 0.96251 0.95045 0.89054 0.94180 1.58657 1.16695 1.58566 1.03795 1.22064 0.92177 0.96501 0.85050 0.90729 1.22789 0.95739 0.97804 0.94346 1.62288 1.11541 1.51108 1.01007 1.22328 0.84282 0.99158 1.01307 1.21652 0.99529 0.98237 0.94806 1.19072 0.88404 0.96945 0.97166 1.21245 0.91698 1.30344 1.12381 0.92669 1.25033 0.96918 0.96082 0.96504 1.69970 1.01150 1.44726 1.37781 0.86589 0.78108 0.80650 0.82641 1.20709 1.21227 1.19825 1.22834 0.95697 0.97267 0.95615 1.22669 0.93126 0.98897 0.86286 1.87872 1.72925 1.55734 1.13813 0.91383 0.91906 0.93027 0.84224 0.84178 0.89644 0.94770 0.91069 0.95278 0.92508 0.93484 0.96869 0.96573 0.93039 0.94326 0.88778 0.92252 0.88554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.34 37.16 0.35 -0.94 16 2 C 0.10 0.98 3.24 -67.71 -0.22 0.76 16 3 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 4 N -0.84 -7.48 9.23 -4.66 -0.04 -7.52 16 5 C 0.10 1.23 2.57 -26.68 -0.07 1.17 16 6 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 7 C 0.02 0.29 4.50 -3.71 -0.02 0.27 16 8 N -0.53 -8.30 4.73 -234.32 -1.11 -9.41 16 9 C 0.06 1.00 4.96 -3.82 -0.02 0.98 16 10 C -0.10 -2.19 5.09 -26.73 -0.14 -2.33 16 11 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 12 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 16 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 C 0.01 0.20 5.44 -3.72 -0.02 0.18 16 21 C 0.07 0.82 7.01 37.21 0.26 1.08 16 22 O -0.39 -5.03 9.81 -35.23 -0.35 -5.37 16 23 H 0.07 0.66 7.69 -51.93 -0.40 0.26 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.34 2.93 7.11 -39.29 -0.28 2.65 16 27 H 0.35 2.38 9.04 -39.29 -0.36 2.02 16 28 H 0.09 1.06 6.69 -51.93 -0.35 0.71 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 31 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 0.96 6.52 -51.93 -0.34 0.63 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 1.37 6.38 -51.93 -0.33 1.04 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 314.79 15.07 4.74 4.74 Total: -1.00 -30.81 314.79 -8.54 -39.35 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -7.08 Total: -0.08 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -0.42 Total: -12.07 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: -0.41 Total: -43.39 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.35 Total: -5.37 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.81 -8.54 -39.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169176233.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.260 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds