Wall clock time and date at job start Mon Mar 30 2020 05:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47111 * 2 1 4 4 N 1.46907 * 109.47129 * 119.99711 * 2 1 3 5 5 C 1.52997 * 109.47258 * 239.99831 * 2 1 3 6 6 H 1.09002 * 109.54073 * 300.10739 * 5 2 1 7 7 C 1.53101 * 109.50898 * 180.02562 * 5 2 1 8 8 N 1.47013 * 109.25858 * 183.21578 * 7 5 2 9 9 C 1.46901 * 110.99794 * 182.39039 * 8 7 5 10 10 C 1.53000 * 109.46769 * 169.99933 * 9 8 7 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46838 * 89.99826 * 16 14 12 18 18 H 1.48497 * 109.47419 * 209.99978 * 16 14 12 19 19 H 1.48499 * 109.47011 * 330.00539 * 16 14 12 20 20 C 1.47009 * 110.74985 * 58.61529 * 8 7 5 21 21 C 1.53093 * 109.26143 * 301.38034 * 20 8 7 22 22 O 1.43012 * 109.50615 * 60.21595 * 5 2 1 23 23 H 1.08995 * 109.47214 * 60.00162 * 1 2 3 24 24 H 1.09003 * 109.47111 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47406 * 300.00132 * 1 2 3 26 26 H 1.00896 * 111.00075 * 176.04688 * 4 2 1 27 27 H 1.00898 * 111.00196 * 300.00551 * 4 2 1 28 28 H 1.08997 * 109.50212 * 63.27874 * 7 5 2 29 29 H 1.08999 * 109.54077 * 303.17311 * 7 5 2 30 30 H 1.09001 * 109.46874 * 50.00213 * 9 8 7 31 31 H 1.08992 * 109.47407 * 290.00231 * 9 8 7 32 32 H 1.09002 * 109.47398 * 300.00295 * 10 9 8 33 33 H 1.09001 * 109.47194 * 60.00475 * 10 9 8 34 34 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 35 35 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 36 36 H 0.97002 * 119.99731 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.50659 * 61.32248 * 20 8 7 38 38 H 1.09003 * 109.50478 * 181.44413 * 20 8 7 39 39 H 1.08993 * 109.51187 * 296.91622 * 21 20 8 40 40 H 1.09003 * 109.54522 * 176.80253 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0400 -0.7213 -1.2492 6 1 1.6757 -1.7486 -1.2513 7 6 3.5710 -0.7223 -1.2497 8 7 4.0551 -1.3479 -2.4889 9 6 5.5222 -1.4202 -2.5038 10 6 5.9779 -2.2910 -3.6764 11 6 7.5060 -2.3669 -3.6916 12 6 7.9550 -3.2241 -4.8468 13 1 7.2236 -3.6698 -5.5048 14 6 9.2994 -3.4385 -5.0646 15 7 10.1900 -2.8953 -4.2637 16 14 9.8560 -4.5016 -6.4962 17 1 10.0507 -3.6510 -7.6979 18 1 11.1364 -5.1686 -6.1491 19 1 8.8230 -5.5300 -6.7800 20 6 3.5511 -0.6277 -3.6672 21 6 2.0203 -0.6277 -3.6426 22 8 1.5679 -0.0448 -2.4174 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 3.0262 -0.7625 1.1910 27 1 1.6961 -0.2350 2.0386 28 1 3.9348 -1.2864 -0.3909 29 1 3.9363 0.3031 -1.1928 30 1 5.8739 -1.8566 -1.5689 31 1 5.9344 -0.4173 -2.6143 32 1 5.5658 -3.2940 -3.5659 33 1 5.6262 -1.8546 -4.6112 34 1 7.9185 -1.3640 -3.8018 35 1 7.8574 -2.8035 -2.7567 36 1 11.1360 -3.0458 -4.4171 37 1 3.9155 0.3994 -3.6494 38 1 3.9005 -1.1228 -4.5733 39 1 1.6551 -1.6521 -3.7145 40 1 1.6421 -0.0465 -4.4836 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169176233.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:08 Heat of formation + Delta-G solvation = -80.388779 kcal Electronic energy + Delta-G solvation = -17860.266944 eV Core-core repulsion = 15094.248289 eV Total energy + Delta-G solvation = -2766.018656 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.89691 -37.76661 -36.62146 -35.50364 -33.26726 -31.61049 -29.87140 -29.42253 -27.06512 -25.12708 -24.35337 -22.24079 -21.38476 -21.23190 -18.52892 -17.79756 -17.47081 -16.68912 -16.54376 -16.37330 -15.83354 -15.54644 -15.27734 -15.14493 -14.93728 -14.26816 -14.13450 -13.67566 -13.20792 -13.04032 -12.72311 -12.71045 -12.66054 -12.53172 -12.44447 -12.27167 -11.96596 -11.61163 -11.41549 -11.34109 -11.14578 -10.58867 -10.54441 -9.68441 -9.42409 -8.21137 -6.32231 1.39792 1.41238 1.52663 2.40133 2.58197 2.77687 3.12106 3.61776 3.75842 3.89270 3.99440 4.01986 4.09401 4.23101 4.28704 4.42108 4.43165 4.57952 4.60261 4.66242 4.76581 4.83268 4.89311 4.96645 4.98603 5.05130 5.07673 5.22417 5.35780 5.50050 5.70861 5.83940 5.92992 5.96172 6.12245 6.21184 6.25125 6.54872 6.84389 7.37111 8.90863 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.048933 B = 0.003972 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.068776 B = 7047.368668 C = 7423.015645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.101 3.899 3 H 0.040 0.960 4 N -0.846 5.846 5 C 0.104 3.896 6 H 0.064 0.936 7 C 0.024 3.976 8 N -0.541 5.541 9 C 0.068 3.932 10 C -0.088 4.088 11 C 0.026 3.974 12 C -0.543 4.543 13 H 0.059 0.941 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.263 1.263 20 C 0.012 3.988 21 C 0.070 3.930 22 O -0.391 6.391 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.345 0.655 27 H 0.357 0.643 28 H 0.093 0.907 29 H 0.032 0.968 30 H 0.071 0.929 31 H 0.024 0.976 32 H 0.053 0.947 33 H 0.051 0.949 34 H -0.011 1.011 35 H -0.007 1.007 36 H 0.264 0.736 37 H 0.034 0.966 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.595 6.757 7.310 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.011 4.011 3 H 0.058 0.942 4 N -0.381 5.381 5 C 0.045 3.955 6 H 0.082 0.918 7 C -0.105 4.105 8 N -0.266 5.266 9 C -0.060 4.060 10 C -0.126 4.126 11 C -0.012 4.012 12 C -0.581 4.581 13 H 0.078 0.922 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.790 3.210 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.187 1.187 20 C -0.116 4.116 21 C -0.007 4.007 22 O -0.309 6.309 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.160 0.840 27 H 0.172 0.828 28 H 0.111 0.889 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.008 0.992 35 H 0.011 0.989 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.151 5.841 7.060 21.230 hybrid contribution 1.963 1.038 -0.419 2.260 sum -17.188 6.879 6.640 19.668 Atomic orbital electron populations 1.21698 0.92917 1.02391 1.02308 1.21097 0.96820 0.94686 0.88493 0.94230 1.58643 1.16910 1.58616 1.03965 1.22089 0.91189 0.96321 0.85868 0.91779 1.22847 0.96578 0.97570 0.93461 1.62234 1.09694 1.52164 1.02527 1.22051 0.86127 0.98038 0.99749 1.21385 0.95816 0.98837 0.96583 1.18967 0.91835 0.94935 0.95439 1.21681 0.92329 1.30869 1.13199 0.92232 1.25997 0.97021 0.97408 0.99471 1.70100 1.01608 1.46034 1.39685 0.85432 0.77765 0.78859 0.78911 1.19712 1.20686 1.18721 1.22904 0.97280 0.96667 0.94795 1.22749 0.91434 0.99608 0.86861 1.87877 1.72903 1.55967 1.14185 0.91877 0.92452 0.91354 0.84034 0.82771 0.88874 0.94926 0.91038 0.95812 0.92863 0.93030 0.99219 0.98900 0.92750 0.94758 0.89360 0.92080 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.34 71.98 0.67 -1.58 16 2 C 0.10 1.87 3.24 44.91 0.15 2.02 16 3 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 4 N -0.85 -13.54 9.23 -168.67 -1.56 -15.10 16 5 C 0.10 2.41 2.57 30.63 0.08 2.49 16 6 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 7 C 0.02 0.60 4.50 86.32 0.39 0.99 16 8 N -0.54 -16.41 4.73 -895.24 -4.23 -20.64 16 9 C 0.07 2.41 4.96 86.30 0.43 2.84 16 10 C -0.09 -3.73 5.09 30.59 0.16 -3.58 16 11 C 0.03 1.39 4.97 29.85 0.15 1.54 16 12 C -0.54 -31.41 9.11 25.60 0.23 -31.17 16 13 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 14 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 15 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 16 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 19 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 20 C 0.01 0.32 5.44 86.31 0.47 0.79 16 21 C 0.07 1.59 7.01 72.01 0.50 2.09 16 22 O -0.39 -9.56 9.81 -148.98 -1.46 -11.02 16 23 H 0.06 1.11 7.69 -2.39 -0.02 1.09 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.35 5.36 7.11 -89.70 -0.64 4.73 16 27 H 0.36 4.20 9.04 -89.70 -0.81 3.39 16 28 H 0.09 2.21 6.69 -2.39 -0.02 2.20 16 29 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 2.52 8.04 -2.39 -0.02 2.50 16 31 H 0.02 0.86 8.12 -2.39 -0.02 0.84 16 32 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.05 2.11 6.52 -2.39 -0.02 2.10 16 34 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 35 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 36 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.09 2.51 6.38 -2.39 -0.02 2.49 16 39 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -65.30 314.79 -1.69 -66.99 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -0.44 Total: 13.42 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 3.69 Total: -23.19 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -5.50 Total: -92.85 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -1.46 Total: -11.02 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -65.30 -1.69 -66.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169176233.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.395 kcal (2) G-P(sol) polarization free energy of solvation -65.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds