Wall clock time and date at job start Mon Mar 30 2020 05:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46764 * 2 1 4 4 N 1.46905 * 109.47276 * 240.00360 * 2 1 3 5 5 C 1.52995 * 109.47264 * 120.00134 * 2 1 3 6 6 H 1.09000 * 109.54157 * 60.11071 * 5 2 1 7 7 C 1.53098 * 109.50901 * 180.21755 * 5 2 1 8 8 N 1.47007 * 109.26159 * 176.78370 * 7 5 2 9 9 C 1.46899 * 111.00177 * 177.60920 * 8 7 5 10 10 C 1.52997 * 109.47254 * 189.68009 * 9 8 7 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47592 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00057 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00356 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99989 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00117 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47306 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47019 * 120.00329 * 16 14 12 19 19 H 1.48498 * 109.47326 * 240.00104 * 16 14 12 20 20 C 1.47017 * 110.75168 * 301.38574 * 8 7 5 21 21 C 1.53097 * 109.26114 * 58.61128 * 20 8 7 22 22 O 1.43011 * 109.50626 * 299.99856 * 5 2 1 23 23 H 1.08993 * 109.47104 * 299.99557 * 1 2 3 24 24 H 1.09000 * 109.47409 * 59.99990 * 1 2 3 25 25 H 1.09001 * 109.47221 * 179.97438 * 1 2 3 26 26 H 1.00893 * 111.00068 * 176.04616 * 4 2 1 27 27 H 1.00905 * 110.99667 * 299.99736 * 4 2 1 28 28 H 1.09004 * 109.50485 * 56.84828 * 7 5 2 29 29 H 1.08997 * 109.50387 * 296.72031 * 7 5 2 30 30 H 1.09002 * 109.47043 * 309.68080 * 9 8 7 31 31 H 1.09001 * 109.47354 * 69.68141 * 9 8 7 32 32 H 1.09002 * 109.47153 * 300.00004 * 10 9 8 33 33 H 1.08998 * 109.47533 * 59.99633 * 10 9 8 34 34 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 35 35 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 36 36 H 0.96996 * 119.99885 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.50700 * 178.54914 * 20 8 7 38 38 H 1.09007 * 109.50617 * 298.67841 * 20 8 7 39 39 H 1.09010 * 109.50310 * 63.08808 * 21 20 8 40 40 H 1.08996 * 109.51089 * 183.16911 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0400 -0.7213 1.2492 6 1 1.6789 -1.7497 1.2493 7 6 3.5710 -0.7170 1.2528 8 7 4.0548 -1.3426 2.4920 9 6 5.5221 -1.4099 2.5097 10 6 5.9788 -2.2742 3.6867 11 6 7.5070 -2.3448 3.7048 12 6 7.9569 -3.1956 4.8645 13 1 7.2259 -3.6417 5.5225 14 6 9.3017 -3.4053 5.0848 15 7 10.1919 -2.8625 4.2832 16 14 9.8594 -4.4593 6.5227 17 1 8.6717 -4.9493 7.2673 18 1 10.6373 -5.6179 6.0148 19 1 10.7126 -3.6492 7.4287 20 6 3.5459 -0.6258 3.6704 21 6 2.0152 -0.6310 3.6427 22 8 1.5638 -0.0477 2.4174 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.0262 -0.6500 -1.2559 27 1 1.6962 -1.6479 -1.2228 28 1 3.9322 0.3100 1.1984 29 1 3.9385 -1.2786 0.3940 30 1 5.8770 -1.8489 1.5773 31 1 5.9307 -0.4050 2.6168 32 1 5.6240 -1.8351 4.6191 33 1 5.5703 -3.2790 3.5797 34 1 7.8615 -2.7841 2.7724 35 1 7.9159 -1.3401 3.8117 36 1 11.1380 -3.0098 4.4384 37 1 3.8952 -1.1210 4.5765 38 1 3.9068 0.4026 3.6548 39 1 1.6534 -1.6569 3.7124 40 1 1.6339 -0.0526 4.4842 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169176310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:12 Heat of formation + Delta-G solvation = -59.968654 kcal Electronic energy + Delta-G solvation = -17879.118206 eV Core-core repulsion = 15113.985033 eV Total energy + Delta-G solvation = -2765.133173 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.92317 -36.63455 -35.72268 -33.58147 -31.42432 -30.55471 -29.11899 -27.86375 -25.45058 -24.10777 -22.71593 -21.02331 -20.50207 -19.88342 -16.73905 -16.66071 -16.06991 -15.97236 -15.18518 -15.10771 -14.66461 -14.38215 -14.04131 -13.82445 -13.70040 -13.13527 -12.37371 -12.12655 -11.97678 -11.89313 -11.64725 -11.54866 -11.27788 -11.12855 -10.88124 -10.67413 -10.54409 -10.50837 -9.72884 -9.66470 -9.36647 -9.10928 -8.99067 -8.37038 -8.23919 -6.01928 -4.04193 3.29634 3.37093 3.41378 3.57545 3.87114 4.38112 4.45110 4.55429 4.82094 4.92596 5.01078 5.14172 5.23349 5.29261 5.34021 5.37996 5.45445 5.64245 5.67389 5.72761 5.80808 5.85654 5.91376 6.00966 6.07079 6.22737 6.61475 6.66949 6.78398 7.01197 7.08768 7.13677 7.21809 7.23972 7.65337 7.79255 7.98024 8.41113 9.03071 9.60047 11.09570 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.049059 B = 0.003978 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.600453 B = 7037.051960 C = 7405.694774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.095 3.905 3 H 0.086 0.914 4 N -0.835 5.835 5 C 0.062 3.938 6 H 0.063 0.937 7 C 0.020 3.980 8 N -0.536 5.536 9 C 0.056 3.944 10 C -0.104 4.104 11 C 0.022 3.978 12 C -0.518 4.518 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.014 3.986 21 C 0.065 3.935 22 O -0.380 6.380 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.344 0.656 27 H 0.341 0.659 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.030 0.970 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.016 0.984 35 H 0.013 0.987 36 H 0.260 0.740 37 H 0.094 0.906 38 H 0.040 0.960 39 H 0.057 0.943 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.392 5.289 -6.755 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.017 4.017 3 H 0.104 0.896 4 N -0.366 5.366 5 C 0.002 3.998 6 H 0.081 0.919 7 C -0.109 4.109 8 N -0.261 5.261 9 C -0.071 4.071 10 C -0.142 4.142 11 C -0.016 4.016 12 C -0.557 4.557 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.114 4.114 21 C -0.012 4.012 22 O -0.298 6.298 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.157 0.843 27 H 0.154 0.846 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.032 0.968 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.925 5.538 -7.182 20.089 hybrid contribution 1.627 -0.651 1.520 2.320 sum -16.297 4.887 -5.662 17.932 Atomic orbital electron populations 1.21715 0.93659 1.01952 1.02264 1.21402 0.96394 0.98389 0.85511 0.89566 1.59124 1.16770 1.21729 1.38962 1.23163 0.92697 0.96756 0.87231 0.91911 1.22783 0.95651 0.98208 0.94218 1.62297 1.11483 1.51266 1.01031 1.22335 0.84216 0.99278 1.01276 1.21652 0.99596 0.98202 0.94762 1.19076 0.88336 0.97013 0.97183 1.21274 0.91702 1.30523 1.12177 0.92630 1.25036 0.96923 0.96055 0.96531 1.69977 1.01136 1.44664 1.37789 0.86535 0.78693 0.80241 0.82534 1.19722 1.20991 1.21022 1.22835 0.95661 0.97372 0.95510 1.22681 0.93151 0.98801 0.86597 1.87930 1.72599 1.55613 1.13613 0.91386 0.92019 0.92997 0.84279 0.84571 0.94154 0.90287 0.91125 0.95148 0.93453 0.92590 0.96593 0.96815 0.93062 0.88781 0.94197 0.92437 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.34 37.16 0.35 -0.90 16 2 C 0.10 0.93 3.21 -67.71 -0.22 0.71 16 3 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 4 N -0.84 -7.26 9.13 -4.67 -0.04 -7.30 16 5 C 0.06 0.70 2.54 -26.68 -0.07 0.64 16 6 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 7 C 0.02 0.25 4.51 -3.71 -0.02 0.24 16 8 N -0.54 -8.06 4.73 -234.31 -1.11 -9.17 16 9 C 0.06 0.97 4.96 -3.83 -0.02 0.95 16 10 C -0.10 -2.16 5.08 -26.74 -0.14 -2.30 16 11 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 12 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 13 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 16 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 C 0.01 0.20 5.43 -3.71 -0.02 0.18 16 21 C 0.06 0.77 7.01 37.21 0.26 1.03 16 22 O -0.38 -4.79 9.80 -35.23 -0.35 -5.13 16 23 H 0.07 0.64 7.68 -51.93 -0.40 0.24 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.34 2.83 7.48 -39.30 -0.29 2.53 16 27 H 0.34 2.64 9.00 -39.29 -0.35 2.29 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.91 6.90 -51.93 -0.36 0.55 16 30 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 31 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 32 H 0.05 0.96 6.51 -51.93 -0.34 0.62 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.09 1.35 6.37 -51.93 -0.33 1.02 16 38 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 39 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 315.14 15.07 4.75 4.75 Total: -1.00 -30.45 315.14 -8.55 -39.00 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -7.10 Total: 0.09 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -0.42 Total: -12.61 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -0.41 Total: -42.80 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.35 Total: -5.13 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.45 -8.55 -39.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169176310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.968 kcal (2) G-P(sol) polarization free energy of solvation -30.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds