Wall clock time and date at job start Mon Mar 30 2020 05:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46764 * 2 1 4 4 N 1.46905 * 109.47276 * 240.00360 * 2 1 3 5 5 C 1.52995 * 109.47264 * 120.00134 * 2 1 3 6 6 H 1.09000 * 109.54157 * 60.11071 * 5 2 1 7 7 C 1.53098 * 109.50901 * 180.21755 * 5 2 1 8 8 N 1.47007 * 109.26159 * 176.78370 * 7 5 2 9 9 C 1.46899 * 111.00177 * 177.60920 * 8 7 5 10 10 C 1.52997 * 109.47254 * 189.68009 * 9 8 7 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47592 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00057 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00356 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99989 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00117 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47306 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47019 * 120.00329 * 16 14 12 19 19 H 1.48498 * 109.47326 * 240.00104 * 16 14 12 20 20 C 1.47017 * 110.75168 * 301.38574 * 8 7 5 21 21 C 1.53097 * 109.26114 * 58.61128 * 20 8 7 22 22 O 1.43011 * 109.50626 * 299.99856 * 5 2 1 23 23 H 1.08993 * 109.47104 * 299.99557 * 1 2 3 24 24 H 1.09000 * 109.47409 * 59.99990 * 1 2 3 25 25 H 1.09001 * 109.47221 * 179.97438 * 1 2 3 26 26 H 1.00893 * 111.00068 * 176.04616 * 4 2 1 27 27 H 1.00905 * 110.99667 * 299.99736 * 4 2 1 28 28 H 1.09004 * 109.50485 * 56.84828 * 7 5 2 29 29 H 1.08997 * 109.50387 * 296.72031 * 7 5 2 30 30 H 1.09002 * 109.47043 * 309.68080 * 9 8 7 31 31 H 1.09001 * 109.47354 * 69.68141 * 9 8 7 32 32 H 1.09002 * 109.47153 * 300.00004 * 10 9 8 33 33 H 1.08998 * 109.47533 * 59.99633 * 10 9 8 34 34 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 35 35 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 36 36 H 0.96996 * 119.99885 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.50700 * 178.54914 * 20 8 7 38 38 H 1.09007 * 109.50617 * 298.67841 * 20 8 7 39 39 H 1.09010 * 109.50310 * 63.08808 * 21 20 8 40 40 H 1.08996 * 109.51089 * 183.16911 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0400 -0.7213 1.2492 6 1 1.6789 -1.7497 1.2493 7 6 3.5710 -0.7170 1.2528 8 7 4.0548 -1.3426 2.4920 9 6 5.5221 -1.4099 2.5097 10 6 5.9788 -2.2742 3.6867 11 6 7.5070 -2.3448 3.7048 12 6 7.9569 -3.1956 4.8645 13 1 7.2259 -3.6417 5.5225 14 6 9.3017 -3.4053 5.0848 15 7 10.1919 -2.8625 4.2832 16 14 9.8594 -4.4593 6.5227 17 1 8.6717 -4.9493 7.2673 18 1 10.6373 -5.6179 6.0148 19 1 10.7126 -3.6492 7.4287 20 6 3.5459 -0.6258 3.6704 21 6 2.0152 -0.6310 3.6427 22 8 1.5638 -0.0477 2.4174 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.0262 -0.6500 -1.2559 27 1 1.6962 -1.6479 -1.2228 28 1 3.9322 0.3100 1.1984 29 1 3.9385 -1.2786 0.3940 30 1 5.8770 -1.8489 1.5773 31 1 5.9307 -0.4050 2.6168 32 1 5.6240 -1.8351 4.6191 33 1 5.5703 -3.2790 3.5797 34 1 7.8615 -2.7841 2.7724 35 1 7.9159 -1.3401 3.8117 36 1 11.1380 -3.0098 4.4384 37 1 3.8952 -1.1210 4.5765 38 1 3.9068 0.4026 3.6548 39 1 1.6534 -1.6569 3.7124 40 1 1.6339 -0.0526 4.4842 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169176310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:11 Heat of formation + Delta-G solvation = -82.383061 kcal Electronic energy + Delta-G solvation = -17880.090168 eV Core-core repulsion = 15113.985033 eV Total energy + Delta-G solvation = -2766.105134 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.94149 -37.81119 -36.66250 -35.51946 -33.28426 -31.51116 -29.87835 -29.39751 -27.03493 -25.13439 -24.34644 -22.26756 -21.49647 -21.37726 -18.54341 -17.62038 -17.44877 -16.90632 -16.50475 -16.40780 -16.03345 -15.66277 -15.17814 -15.14049 -14.70084 -14.33672 -14.11748 -13.69428 -13.21798 -13.04142 -12.74292 -12.72373 -12.63518 -12.62668 -12.44267 -12.11718 -11.93780 -11.67674 -11.44350 -11.39777 -11.18062 -10.62459 -10.57043 -9.78326 -9.46411 -8.22496 -6.33664 1.39002 1.39206 1.52786 2.38910 2.62468 2.77470 3.10833 3.61770 3.65718 3.86324 3.96027 4.01329 4.07433 4.19922 4.27633 4.40326 4.45867 4.50116 4.58449 4.63741 4.73606 4.77372 4.86859 4.94672 4.99189 5.03046 5.16790 5.20804 5.36105 5.48500 5.68630 5.82407 5.89431 5.93332 6.04492 6.22791 6.23398 6.49669 6.83163 7.35870 8.89674 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.049059 B = 0.003978 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.600453 B = 7037.051960 C = 7405.694774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.102 3.898 3 H 0.079 0.921 4 N -0.834 5.834 5 C 0.067 3.933 6 H 0.063 0.937 7 C 0.020 3.980 8 N -0.540 5.540 9 C 0.067 3.933 10 C -0.088 4.088 11 C 0.026 3.974 12 C -0.542 4.542 13 H 0.059 0.941 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.278 1.278 20 C 0.012 3.988 21 C 0.069 3.931 22 O -0.388 6.388 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.346 0.654 27 H 0.349 0.651 28 H 0.034 0.966 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.023 0.977 32 H 0.050 0.950 33 H 0.053 0.947 34 H -0.007 1.007 35 H -0.011 1.011 36 H 0.264 0.736 37 H 0.087 0.913 38 H 0.033 0.967 39 H 0.061 0.939 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.658 4.791 -6.386 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.011 4.011 3 H 0.097 0.903 4 N -0.366 5.366 5 C 0.007 3.993 6 H 0.081 0.919 7 C -0.108 4.108 8 N -0.265 5.265 9 C -0.060 4.060 10 C -0.126 4.126 11 C -0.012 4.012 12 C -0.580 4.580 13 H 0.078 0.922 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.791 3.209 17 H -0.186 1.186 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.117 4.117 21 C -0.008 4.008 22 O -0.306 6.306 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.160 0.840 27 H 0.162 0.838 28 H 0.053 0.947 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.011 0.989 35 H 0.008 0.992 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.214 5.041 -6.822 21.003 hybrid contribution 2.022 -0.473 1.365 2.485 sum -17.192 4.568 -5.456 18.607 Atomic orbital electron populations 1.21672 0.92918 1.02311 1.02252 1.21343 0.96900 0.97865 0.85003 0.90308 1.59119 1.17065 1.22256 1.38149 1.23224 0.91496 0.96985 0.87595 0.91884 1.22869 0.96701 0.97819 0.93399 1.62246 1.09521 1.52212 1.02527 1.22055 0.86167 0.98060 0.99730 1.21381 0.95830 0.98857 0.96529 1.18971 0.91834 0.94945 0.95463 1.21703 0.92306 1.31011 1.12986 0.92242 1.25998 0.97041 0.97357 0.99512 1.70102 1.01621 1.45985 1.39699 0.85382 0.78444 0.78329 0.78795 1.18565 1.20294 1.20329 1.22904 0.97323 0.96672 0.94758 1.22740 0.91368 0.99529 0.87177 1.87934 1.72582 1.56004 1.14047 0.91865 0.91550 0.92449 0.83961 0.83779 0.94726 0.89109 0.90990 0.95877 0.93098 0.92817 0.98879 0.99246 0.92737 0.89462 0.94839 0.92104 0.86321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 9.34 71.98 0.67 -1.49 16 2 C 0.10 1.81 3.21 44.91 0.14 1.96 16 3 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 4 N -0.83 -13.02 9.13 -168.68 -1.54 -14.56 16 5 C 0.07 1.42 2.54 30.63 0.08 1.50 16 6 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 7 C 0.02 0.49 4.51 86.32 0.39 0.88 16 8 N -0.54 -15.77 4.73 -895.21 -4.23 -20.00 16 9 C 0.07 2.35 4.96 86.30 0.43 2.78 16 10 C -0.09 -3.67 5.08 30.59 0.16 -3.52 16 11 C 0.03 1.36 4.97 29.84 0.15 1.51 16 12 C -0.54 -31.17 9.11 25.60 0.23 -30.94 16 13 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 14 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 15 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 16 Si 0.97 44.41 29.54 68.60 2.03 46.43 16 17 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 C 0.01 0.31 5.43 86.31 0.47 0.78 16 21 C 0.07 1.51 7.01 72.01 0.50 2.01 16 22 O -0.39 -9.08 9.80 -148.98 -1.46 -10.54 16 23 H 0.06 1.09 7.68 -2.39 -0.02 1.07 16 24 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.35 5.14 7.48 -89.70 -0.67 4.47 16 27 H 0.35 4.70 9.00 -89.69 -0.81 3.89 16 28 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.09 1.95 6.90 -2.39 -0.02 1.93 16 30 H 0.07 2.47 8.04 -2.39 -0.02 2.45 16 31 H 0.02 0.83 8.12 -2.39 -0.02 0.81 16 32 H 0.05 2.07 6.51 -2.39 -0.02 2.05 16 33 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 34 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 36 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 37 H 0.09 2.45 6.37 -2.39 -0.02 2.43 16 38 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -64.47 315.14 -1.71 -66.17 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -0.47 Total: 13.51 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 3.68 Total: -24.16 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -5.49 Total: -91.42 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -1.46 Total: -10.54 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -64.47 -1.71 -66.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169176310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.212 kcal (2) G-P(sol) polarization free energy of solvation -64.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds