Wall clock time and date at job start Mon Mar 30 2020 05:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47012 * 2 1 4 4 N 1.46909 * 109.46952 * 119.99499 * 2 1 3 5 5 C 1.52999 * 109.47653 * 239.99492 * 2 1 3 6 6 H 1.08996 * 109.50525 * 65.08174 * 5 2 1 7 7 C 1.53090 * 109.54471 * 185.19670 * 5 2 1 8 8 N 1.47013 * 109.25870 * 176.80270 * 7 5 2 9 9 C 1.46896 * 111.00300 * 177.60392 * 8 7 5 10 10 C 1.52996 * 109.47489 * 189.68065 * 9 8 7 11 11 C 1.53002 * 109.47340 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.46925 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00196 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99394 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00338 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99426 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47776 * 59.99746 * 16 14 12 18 18 H 1.48503 * 109.46851 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47028 * 299.99350 * 16 14 12 20 20 C 1.47017 * 110.75415 * 301.38789 * 8 7 5 21 21 C 1.53090 * 109.25815 * 58.61316 * 20 8 7 22 22 O 1.43018 * 109.50298 * 305.00251 * 5 2 1 23 23 H 1.09006 * 109.47237 * 60.00571 * 1 2 3 24 24 H 1.09005 * 109.47103 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47493 * 300.00325 * 1 2 3 26 26 H 1.00898 * 110.99896 * 300.00220 * 4 2 1 27 27 H 1.00895 * 110.99799 * 63.95449 * 4 2 1 28 28 H 1.08998 * 109.50732 * 56.87137 * 7 5 2 29 29 H 1.08998 * 109.50865 * 296.74130 * 7 5 2 30 30 H 1.09004 * 109.46736 * 69.68489 * 9 8 7 31 31 H 1.09000 * 109.47357 * 309.68524 * 9 8 7 32 32 H 1.09004 * 109.46785 * 60.00454 * 10 9 8 33 33 H 1.09004 * 109.47694 * 300.00553 * 10 9 8 34 34 H 1.09000 * 109.46497 * 60.00561 * 11 10 9 35 35 H 1.09000 * 109.47312 * 300.00340 * 11 10 9 36 36 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 37 37 H 1.09006 * 109.50605 * 178.54910 * 20 8 7 38 38 H 1.08994 * 109.50126 * 298.62872 * 20 8 7 39 39 H 1.09006 * 109.50886 * 63.08844 * 21 20 8 40 40 H 1.09003 * 109.50790 * 183.21814 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0401 -0.7213 -1.2491 6 1 1.7533 -0.1582 -2.1372 7 6 3.5654 -0.8364 -1.1871 8 7 4.0420 -1.5970 -2.3513 9 6 5.5085 -1.6821 -2.3602 10 6 5.9777 -2.2632 -3.6955 11 6 7.5051 -2.3524 -3.7044 12 6 7.9672 -2.9242 -5.0200 13 1 7.2439 -3.1963 -5.7744 14 6 9.3134 -3.0999 -5.2603 15 7 10.1943 -2.7680 -4.3418 16 14 9.8862 -3.8079 -6.8913 17 1 9.4360 -2.9273 -7.9989 18 1 11.3687 -3.8958 -6.8994 19 1 9.3096 -5.1644 -7.0718 20 6 3.4363 -2.9363 -2.3822 21 6 1.9123 -2.8001 -2.4323 22 8 1.4702 -2.0317 -1.3100 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.6960 -0.2348 2.0386 27 1 1.7501 -1.6647 1.1911 28 1 3.8545 -1.3528 -0.2718 29 1 4.0063 0.1603 -1.1981 30 1 5.8399 -2.3275 -1.5466 31 1 5.9311 -0.6860 -2.2288 32 1 5.6463 -1.6178 -4.5090 33 1 5.5551 -3.2594 -3.8269 34 1 7.8360 -2.9981 -2.8909 35 1 7.9280 -1.3564 -3.5729 36 1 11.1413 -2.8913 -4.5112 37 1 3.7831 -3.4723 -3.2657 38 1 3.7241 -3.4865 -1.4864 39 1 1.6219 -2.2973 -3.3548 40 1 1.4571 -3.7899 -2.3976 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169176393.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:15 Heat of formation + Delta-G solvation = -81.639790 kcal Electronic energy + Delta-G solvation = -17919.993575 eV Core-core repulsion = 15153.920672 eV Total energy + Delta-G solvation = -2766.072904 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.83264 -37.78338 -36.42363 -35.46385 -33.24719 -31.58447 -29.60872 -29.39638 -27.08906 -25.02670 -24.40328 -22.29972 -21.39435 -21.05862 -18.51274 -17.73237 -17.22625 -16.81619 -16.53715 -16.30656 -15.89829 -15.27209 -15.08326 -15.01887 -14.61371 -14.24401 -13.97891 -13.73113 -13.58047 -13.12880 -12.83626 -12.68380 -12.63673 -12.46019 -12.34546 -12.18856 -11.79874 -11.61492 -11.39514 -11.34053 -11.12442 -10.56262 -10.50909 -9.61213 -9.29129 -8.20194 -6.31723 1.39966 1.43512 1.51439 2.40844 2.73577 2.88309 3.12721 3.62357 3.80766 4.00311 4.07142 4.09424 4.25679 4.27335 4.36460 4.41219 4.49974 4.61600 4.65420 4.68618 4.78797 4.88561 4.93581 4.96411 5.00324 5.08985 5.13618 5.24483 5.36146 5.50489 5.72006 5.84544 5.99163 6.06202 6.18381 6.25885 6.29894 6.64627 6.84797 7.37540 8.91708 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.054797 B = 0.003938 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.854973 B = 7107.687793 C = 7399.387324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 H 0.099 0.901 4 N -0.848 5.848 5 C 0.102 3.898 6 H 0.067 0.933 7 C 0.034 3.966 8 N -0.544 5.544 9 C 0.069 3.931 10 C -0.087 4.087 11 C 0.026 3.974 12 C -0.544 4.544 13 H 0.060 0.940 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.266 1.266 20 C 0.014 3.986 21 C 0.072 3.928 22 O -0.387 6.387 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.349 0.651 27 H 0.344 0.656 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.020 0.980 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.051 0.949 34 H -0.011 1.011 35 H -0.009 1.009 36 H 0.264 0.736 37 H 0.084 0.916 38 H 0.031 0.969 39 H 0.060 0.940 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.546 3.870 8.296 22.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.013 4.013 3 H 0.117 0.883 4 N -0.379 5.379 5 C 0.044 3.956 6 H 0.085 0.915 7 C -0.094 4.094 8 N -0.269 5.269 9 C -0.058 4.058 10 C -0.125 4.125 11 C -0.012 4.012 12 C -0.582 4.582 13 H 0.078 0.922 14 C -0.199 4.199 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.191 1.191 20 C -0.114 4.114 21 C -0.005 4.005 22 O -0.306 6.306 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.163 0.837 27 H 0.157 0.843 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.007 0.993 35 H 0.010 0.990 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.916 4.250 7.789 21.803 hybrid contribution 0.387 -0.848 0.057 0.933 sum -19.529 3.403 7.846 21.319 Atomic orbital electron populations 1.22437 0.95948 1.02295 1.02624 1.21445 0.93564 0.97581 0.88679 0.88333 1.58886 1.67352 1.07407 1.04228 1.22254 0.90702 0.84321 0.98314 0.91540 1.22658 0.96456 0.98951 0.91375 1.62273 1.06761 1.16177 1.41708 1.22007 0.86737 1.00182 0.96915 1.21382 0.95718 0.99493 0.95929 1.18969 0.91928 0.94850 0.95439 1.21659 0.92445 1.42133 1.01963 0.92160 1.26014 0.97065 0.95923 1.00927 1.70096 1.01918 1.49340 1.36114 0.85474 0.76986 0.79224 0.79207 1.19088 1.20785 1.19093 1.22863 0.96798 0.90315 1.01463 1.22692 0.91543 0.97074 0.89191 1.87875 1.68154 1.26744 1.47824 0.91974 0.92698 0.91488 0.83661 0.84278 0.93648 0.90296 0.96139 0.91436 0.92826 0.93068 0.99311 0.99018 0.92735 0.89791 0.95038 0.92154 0.86472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 9.28 71.98 0.67 -1.79 16 2 C 0.10 1.68 3.31 44.91 0.15 1.83 16 3 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 4 N -0.85 -14.43 8.22 -168.68 -1.39 -15.81 16 5 C 0.10 2.24 2.68 30.62 0.08 2.32 16 6 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 7 C 0.03 0.90 4.77 86.31 0.41 1.31 16 8 N -0.54 -16.92 4.73 -895.25 -4.23 -21.15 16 9 C 0.07 2.57 4.96 86.30 0.43 3.00 16 10 C -0.09 -3.77 5.08 30.59 0.16 -3.62 16 11 C 0.03 1.41 4.97 29.85 0.15 1.56 16 12 C -0.54 -31.80 9.11 25.60 0.23 -31.56 16 13 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 14 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 15 N -0.93 -58.02 13.29 21.45 0.28 -57.74 16 16 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 C 0.01 0.39 5.43 86.31 0.47 0.85 16 21 C 0.07 1.59 7.01 72.01 0.50 2.09 16 22 O -0.39 -8.83 9.11 -148.98 -1.36 -10.19 16 23 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 24 H 0.05 0.90 7.56 -2.38 -0.02 0.88 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.35 4.46 9.04 -89.70 -0.81 3.65 16 27 H 0.34 6.25 8.54 -89.70 -0.77 5.48 16 28 H 0.05 1.33 7.37 -2.39 -0.02 1.31 16 29 H 0.08 2.08 8.09 -2.39 -0.02 2.06 16 30 H 0.02 0.79 8.12 -2.38 -0.02 0.77 16 31 H 0.07 2.51 8.04 -2.39 -0.02 2.49 16 32 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 33 H 0.05 2.14 6.51 -2.39 -0.02 2.13 16 34 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 35 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 36 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 37 H 0.08 2.44 6.37 -2.38 -0.02 2.43 16 38 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -65.43 315.39 -1.52 -66.96 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -0.57 Total: 14.66 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: 3.71 Total: -23.64 kcal Atomic # 7 Polarization: -89.37 SS G_CDS: -5.33 Total: -94.70 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -1.36 Total: -10.19 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -65.43 -1.52 -66.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169176393.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.683 kcal (2) G-P(sol) polarization free energy of solvation -65.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds