Wall clock time and date at job start Mon Mar 30 2020 05:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99749 * 2 1 4 4 C 1.52997 * 109.46991 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47154 * 62.60302 * 4 3 2 6 6 C 1.46960 * 111.00115 * 176.24052 * 5 4 3 7 7 C 1.53048 * 109.36368 * 176.81248 * 6 5 4 8 8 N 1.46956 * 109.38432 * 58.38633 * 7 6 5 9 9 C 1.46902 * 110.99742 * 176.82204 * 8 7 6 10 10 H 1.08992 * 109.47208 * 300.00285 * 9 8 7 11 11 C 1.52999 * 109.47126 * 60.00372 * 9 8 7 12 12 C 1.50704 * 109.46786 * 179.97438 * 9 8 7 13 13 H 1.07998 * 120.00110 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99555 * 180.02562 * 12 9 8 15 15 N 1.31513 * 120.00266 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99470 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47169 * 59.99833 * 16 14 12 18 18 H 1.48498 * 109.46835 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47117 * 299.99526 * 16 14 12 20 20 C 1.46956 * 110.87957 * 300.71381 * 8 7 6 21 21 C 1.46960 * 111.00027 * 52.43838 * 5 4 3 22 22 H 1.09009 * 109.46931 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47140 * 299.99056 * 1 2 3 24 24 H 1.08994 * 109.48056 * 59.99422 * 1 2 3 25 25 H 1.09001 * 109.46840 * 60.00407 * 3 2 1 26 26 H 1.09001 * 109.47346 * 300.00863 * 3 2 1 27 27 H 1.09001 * 109.47546 * 302.59838 * 4 3 2 28 28 H 1.09004 * 109.47227 * 182.59888 * 4 3 2 29 29 H 1.08997 * 109.48992 * 56.84061 * 6 5 4 30 30 H 1.09001 * 109.48695 * 296.77575 * 6 5 4 31 31 H 1.08995 * 109.49042 * 178.36926 * 7 6 5 32 32 H 1.09004 * 109.48554 * 298.40935 * 7 6 5 33 33 H 1.09004 * 109.47083 * 300.00010 * 11 9 8 34 34 H 1.09002 * 109.47223 * 59.99832 * 11 9 8 35 35 H 1.09002 * 109.47307 * 179.97438 * 11 9 8 36 36 H 0.96998 * 119.99844 * 180.02562 * 15 14 12 37 37 H 1.09001 * 109.47147 * 299.31979 * 20 8 7 38 38 H 1.09007 * 109.50613 * 179.27689 * 20 8 7 39 39 H 1.09003 * 109.48670 * 303.15490 * 21 5 4 40 40 H 1.08998 * 109.49070 * 63.20019 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 7 3.9727 0.5110 -1.2306 6 6 5.4392 0.4564 -1.3083 7 6 5.8525 -0.3206 -2.5604 8 7 5.2889 0.3344 -3.7491 9 6 5.7263 -0.3399 -4.9788 10 1 6.8138 -0.3070 -5.0441 11 6 5.2607 -1.7971 -4.9546 12 6 5.1293 0.3579 -6.1737 13 1 4.4894 1.2165 -6.0337 14 6 5.4001 -0.1001 -7.4458 15 7 6.1798 -1.1454 -7.6163 16 14 4.6608 0.7652 -8.9270 17 1 5.1131 2.1794 -8.9508 18 1 5.1028 0.0836 -10.1700 19 1 3.1791 0.7208 -8.8376 20 6 3.8225 0.3893 -3.6711 21 6 3.4092 1.1665 -2.4191 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5137 0.8901 24 1 -0.3635 0.5139 -0.8898 25 1 1.6885 1.8463 0.8900 26 1 1.6884 1.8465 -0.8899 27 1 3.8543 0.6040 0.8649 28 1 3.9786 2.1795 0.0460 29 1 5.8319 -0.0443 -0.4234 30 1 5.8385 1.4693 -1.3607 31 1 6.9397 -0.3376 -2.6356 32 1 5.4765 -1.3417 -2.4953 33 1 5.6920 -2.3021 -4.0902 34 1 4.1731 -1.8300 -4.8893 35 1 5.5848 -2.2973 -5.8672 36 1 6.3705 -1.4673 -8.5112 37 1 3.4232 -0.6235 -3.6187 38 1 3.4294 0.8899 -4.5561 39 1 2.3219 1.1833 -2.3439 40 1 3.7851 2.1876 -2.4838 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171052207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:51 Heat of formation + Delta-G solvation = -25.201621 kcal Electronic energy + Delta-G solvation = -18565.433386 eV Core-core repulsion = 15801.807825 eV Total energy + Delta-G solvation = -2763.625561 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.07560 -37.65608 -35.52507 -32.67729 -30.58180 -30.13594 -28.17131 -26.26372 -25.32645 -24.64154 -23.05664 -21.56612 -20.38159 -18.57288 -16.53539 -16.38610 -16.10614 -15.33126 -15.01817 -14.52034 -14.35166 -13.97472 -13.86133 -13.60688 -13.12747 -12.52164 -12.41695 -12.00240 -11.71985 -11.53594 -11.30248 -11.13402 -11.02193 -10.78896 -10.62653 -10.44483 -10.35738 -10.13142 -9.85636 -9.62572 -9.52260 -8.77629 -8.34814 -7.96209 -7.03909 -5.97113 -4.01082 3.34358 3.38648 3.41258 3.77823 4.19209 4.44215 4.97449 5.05662 5.10036 5.27314 5.31345 5.31826 5.34791 5.47708 5.58096 5.66839 5.67963 5.77589 5.93593 5.94354 6.04680 6.19651 6.33164 6.56033 6.72161 6.77221 6.92780 6.97100 7.14554 7.21941 7.38981 7.41757 7.63000 7.80341 7.87754 8.17735 8.46098 8.67149 9.04469 9.63716 11.09912 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.030596 B = 0.005769 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.919216 B = 4852.099039 C = 5262.591825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.372 6.372 3 C 0.060 3.940 4 C 0.057 3.943 5 N -0.529 5.529 6 C 0.061 3.939 7 C 0.054 3.946 8 N -0.534 5.534 9 C 0.211 3.789 10 H 0.039 0.961 11 C -0.170 4.170 12 C -0.502 4.502 13 H 0.061 0.939 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.896 3.104 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.066 3.934 21 C 0.055 3.945 22 H 0.084 0.916 23 H 0.035 0.965 24 H 0.039 0.961 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.038 0.962 33 H 0.010 0.990 34 H 0.028 0.972 35 H 0.086 0.914 36 H 0.260 0.740 37 H 0.034 0.966 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.303 3.887 14.065 16.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.290 6.290 3 C -0.017 4.017 4 C -0.071 4.071 5 N -0.255 5.255 6 C -0.067 4.067 7 C -0.075 4.075 8 N -0.259 5.259 9 C 0.105 3.895 10 H 0.057 0.943 11 C -0.229 4.229 12 C -0.541 4.541 13 H 0.079 0.921 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.062 4.062 21 C -0.073 4.073 22 H 0.102 0.898 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.029 0.971 34 H 0.047 0.953 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.099 3.612 13.907 16.026 hybrid contribution -0.602 0.623 -0.829 1.199 sum -7.702 4.235 13.078 15.757 Atomic orbital electron populations 1.22720 0.81899 1.02593 0.99451 1.88042 1.18699 1.27072 1.95190 1.22661 0.93837 0.85348 0.99833 1.22103 0.93139 0.97417 0.94478 1.62157 1.09181 1.52760 1.01353 1.22162 0.86947 0.99275 0.98314 1.22050 0.99031 0.96195 0.90173 1.62504 1.07678 1.53157 1.02555 1.19267 0.96085 0.88819 0.85321 0.94339 1.22375 0.98822 1.01008 1.00745 1.21104 1.29627 1.13313 0.90010 0.92067 1.24924 0.95311 0.95107 0.98863 1.69881 1.37038 1.24242 1.22110 0.86603 0.79414 0.79716 0.81901 1.20297 1.21397 1.20395 1.21987 0.89783 0.98698 0.95757 1.22334 0.98635 0.96076 0.90283 0.89785 0.94664 0.94261 0.93446 0.92901 0.90267 0.93792 0.91380 0.94655 0.91383 0.94432 0.97130 0.95263 0.89542 0.92992 0.94758 0.89645 0.91199 0.94881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.37 -5.11 10.61 -35.23 -0.37 -5.48 16 3 C 0.06 0.71 5.58 37.16 0.21 0.91 16 4 C 0.06 0.73 5.53 -3.82 -0.02 0.70 16 5 N -0.53 -8.54 4.73 -234.46 -1.11 -9.65 16 6 C 0.06 0.99 5.62 -3.77 -0.02 0.97 16 7 C 0.05 1.05 5.13 -3.77 -0.02 1.03 16 8 N -0.53 -11.87 4.73 -227.88 -1.08 -12.94 16 9 C 0.21 5.43 2.43 -68.86 -0.17 5.26 16 10 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 11 C -0.17 -4.26 8.27 37.16 0.31 -3.95 16 12 C -0.50 -13.81 7.89 -34.44 -0.27 -14.08 16 13 H 0.06 1.67 6.41 -52.49 -0.34 1.34 16 14 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 15 N -0.89 -25.67 11.32 55.43 0.63 -25.04 16 16 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.07 1.37 4.93 -3.77 -0.02 1.35 16 21 C 0.05 0.93 5.13 -3.77 -0.02 0.91 16 22 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 23 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.62 6.09 -51.93 -0.32 0.30 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.04 0.77 6.48 -51.93 -0.34 0.43 16 33 H 0.01 0.23 6.48 -51.93 -0.34 -0.11 16 34 H 0.03 0.72 6.56 -51.93 -0.34 0.38 16 35 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.03 0.76 6.57 -51.93 -0.34 0.42 16 38 H 0.09 1.87 6.14 -51.93 -0.32 1.56 16 39 H 0.07 1.09 5.95 -51.93 -0.31 0.79 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 303.68 15.07 4.58 4.58 Total: -1.00 -29.63 303.68 -8.12 -37.75 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -6.74 Total: -1.68 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 0.99 Total: -3.94 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -1.56 Total: -47.64 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.37 Total: -5.48 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.63 -8.12 -37.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171052207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.548 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds