Wall clock time and date at job start Mon Mar 30 2020 05:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99749 * 2 1 4 4 C 1.52997 * 109.46991 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47154 * 62.60302 * 4 3 2 6 6 C 1.46960 * 111.00115 * 176.24052 * 5 4 3 7 7 C 1.53048 * 109.36368 * 176.81248 * 6 5 4 8 8 N 1.46956 * 109.38432 * 58.38633 * 7 6 5 9 9 C 1.46902 * 110.99742 * 176.82204 * 8 7 6 10 10 H 1.08992 * 109.47208 * 300.00285 * 9 8 7 11 11 C 1.52999 * 109.47126 * 60.00372 * 9 8 7 12 12 C 1.50704 * 109.46786 * 179.97438 * 9 8 7 13 13 H 1.07998 * 120.00110 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99555 * 180.02562 * 12 9 8 15 15 N 1.31513 * 120.00266 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99470 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47169 * 59.99833 * 16 14 12 18 18 H 1.48498 * 109.46835 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47117 * 299.99526 * 16 14 12 20 20 C 1.46956 * 110.87957 * 300.71381 * 8 7 6 21 21 C 1.46960 * 111.00027 * 52.43838 * 5 4 3 22 22 H 1.09009 * 109.46931 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47140 * 299.99056 * 1 2 3 24 24 H 1.08994 * 109.48056 * 59.99422 * 1 2 3 25 25 H 1.09001 * 109.46840 * 60.00407 * 3 2 1 26 26 H 1.09001 * 109.47346 * 300.00863 * 3 2 1 27 27 H 1.09001 * 109.47546 * 302.59838 * 4 3 2 28 28 H 1.09004 * 109.47227 * 182.59888 * 4 3 2 29 29 H 1.08997 * 109.48992 * 56.84061 * 6 5 4 30 30 H 1.09001 * 109.48695 * 296.77575 * 6 5 4 31 31 H 1.08995 * 109.49042 * 178.36926 * 7 6 5 32 32 H 1.09004 * 109.48554 * 298.40935 * 7 6 5 33 33 H 1.09004 * 109.47083 * 300.00010 * 11 9 8 34 34 H 1.09002 * 109.47223 * 59.99832 * 11 9 8 35 35 H 1.09002 * 109.47307 * 179.97438 * 11 9 8 36 36 H 0.96998 * 119.99844 * 180.02562 * 15 14 12 37 37 H 1.09001 * 109.47147 * 299.31979 * 20 8 7 38 38 H 1.09007 * 109.50613 * 179.27689 * 20 8 7 39 39 H 1.09003 * 109.48670 * 303.15490 * 21 5 4 40 40 H 1.08998 * 109.49070 * 63.20019 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 7 3.9727 0.5110 -1.2306 6 6 5.4392 0.4564 -1.3083 7 6 5.8525 -0.3206 -2.5604 8 7 5.2889 0.3344 -3.7491 9 6 5.7263 -0.3399 -4.9788 10 1 6.8138 -0.3070 -5.0441 11 6 5.2607 -1.7971 -4.9546 12 6 5.1293 0.3579 -6.1737 13 1 4.4894 1.2165 -6.0337 14 6 5.4001 -0.1001 -7.4458 15 7 6.1798 -1.1454 -7.6163 16 14 4.6608 0.7652 -8.9270 17 1 5.1131 2.1794 -8.9508 18 1 5.1028 0.0836 -10.1700 19 1 3.1791 0.7208 -8.8376 20 6 3.8225 0.3893 -3.6711 21 6 3.4092 1.1665 -2.4191 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5137 0.8901 24 1 -0.3635 0.5139 -0.8898 25 1 1.6885 1.8463 0.8900 26 1 1.6884 1.8465 -0.8899 27 1 3.8543 0.6040 0.8649 28 1 3.9786 2.1795 0.0460 29 1 5.8319 -0.0443 -0.4234 30 1 5.8385 1.4693 -1.3607 31 1 6.9397 -0.3376 -2.6356 32 1 5.4765 -1.3417 -2.4953 33 1 5.6920 -2.3021 -4.0902 34 1 4.1731 -1.8300 -4.8893 35 1 5.5848 -2.2973 -5.8672 36 1 6.3705 -1.4673 -8.5112 37 1 3.4232 -0.6235 -3.6187 38 1 3.4294 0.8899 -4.5561 39 1 2.3219 1.1833 -2.3439 40 1 3.7851 2.1876 -2.4838 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171052207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:50 Heat of formation + Delta-G solvation = -47.184092 kcal Electronic energy + Delta-G solvation = -18566.386618 eV Core-core repulsion = 15801.807825 eV Total energy + Delta-G solvation = -2764.578792 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.46844 -38.77894 -37.03406 -34.59674 -32.03166 -31.65184 -29.68384 -27.42568 -27.17981 -26.07254 -24.55338 -22.92289 -21.94767 -20.18683 -18.20687 -17.66364 -17.34276 -16.80785 -16.26729 -15.93455 -15.76430 -15.51137 -15.33127 -15.08848 -14.53942 -14.34911 -13.75248 -13.48917 -13.13303 -12.95915 -12.70444 -12.62495 -12.57983 -12.46116 -12.23232 -12.14428 -11.98394 -11.90279 -11.53479 -11.21519 -10.83042 -10.50445 -10.46464 -9.19631 -8.83994 -8.09898 -6.21237 1.43211 1.44988 1.52468 2.43576 2.88203 3.07279 3.19114 3.39449 4.00165 4.04693 4.23067 4.30052 4.42267 4.45775 4.48311 4.52281 4.58782 4.61027 4.70246 4.74069 4.75467 4.88052 4.90630 4.91269 5.00186 5.04871 5.09796 5.16819 5.25390 5.55166 5.71473 5.78831 6.10548 6.14703 6.20848 6.40066 6.50247 6.76335 6.92178 7.47838 8.96423 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.030596 B = 0.005769 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.919216 B = 4852.099039 C = 5262.591825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.059 3.941 4 C 0.056 3.944 5 N -0.544 5.544 6 C 0.070 3.930 7 C 0.053 3.947 8 N -0.541 5.541 9 C 0.215 3.785 10 H 0.006 0.994 11 C -0.154 4.154 12 C -0.517 4.517 13 H 0.059 0.941 14 C 0.011 3.989 15 N -0.921 5.921 16 Si 0.960 3.040 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.271 1.271 20 C 0.071 3.929 21 C 0.068 3.932 22 H 0.087 0.913 23 H 0.055 0.945 24 H 0.041 0.959 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.061 0.939 36 H 0.261 0.739 37 H 0.015 0.985 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.379 5.089 15.405 18.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C -0.018 4.018 4 C -0.071 4.071 5 N -0.270 5.270 6 C -0.058 4.058 7 C -0.075 4.075 8 N -0.265 5.265 9 C 0.108 3.892 10 H 0.024 0.976 11 C -0.213 4.213 12 C -0.556 4.556 13 H 0.077 0.923 14 C -0.187 4.187 15 N -0.561 5.561 16 Si 0.786 3.214 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.196 1.196 20 C -0.057 4.057 21 C -0.060 4.060 22 H 0.106 0.894 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.106 0.894 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.186 4.825 15.274 17.989 hybrid contribution -0.264 0.223 -1.182 1.231 sum -8.450 5.047 14.093 17.190 Atomic orbital electron populations 1.22863 0.80356 1.03292 1.00528 1.87989 1.20556 1.28319 1.95444 1.22737 0.93015 0.84941 1.01070 1.22213 0.94056 0.98075 0.92739 1.62123 1.08936 1.53725 1.02219 1.22083 0.87363 0.99100 0.97278 1.22130 0.98964 0.95916 0.90535 1.62427 1.08772 1.52990 1.02314 1.19038 0.94057 0.89268 0.86874 0.97566 1.22159 0.98367 1.00745 1.00021 1.21365 1.29728 1.13438 0.91043 0.92334 1.25717 0.95656 0.95747 1.01627 1.70015 1.37995 1.25386 1.22684 0.85579 0.78821 0.78673 0.78352 1.19708 1.21010 1.19646 1.21922 0.88552 0.98011 0.97246 1.22140 0.99528 0.95264 0.89058 0.89417 0.92669 0.94031 0.90709 0.93077 0.89448 0.92107 0.88822 0.94310 0.91349 0.95755 0.95724 0.95677 0.92015 0.92978 0.96642 0.91497 0.89694 0.94672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.71 16 2 O -0.40 -10.19 10.61 -148.98 -1.58 -11.77 16 3 C 0.06 1.21 5.58 71.98 0.40 1.61 16 4 C 0.06 1.26 5.53 86.30 0.48 1.74 16 5 N -0.54 -16.39 4.73 -895.71 -4.23 -20.62 16 6 C 0.07 2.11 5.62 86.31 0.48 2.59 16 7 C 0.05 2.03 5.13 86.31 0.44 2.47 16 8 N -0.54 -24.21 4.73 -874.88 -4.14 -28.35 16 9 C 0.21 11.33 2.43 44.17 0.11 11.44 16 10 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 11 C -0.15 -7.89 8.27 71.98 0.60 -7.30 16 12 C -0.52 -28.97 7.89 25.60 0.20 -28.77 16 13 H 0.06 3.24 6.41 -2.91 -0.02 3.22 16 14 C 0.01 0.62 5.30 84.66 0.45 1.07 16 15 N -0.92 -53.90 11.32 21.45 0.24 -53.65 16 16 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 20 C 0.07 2.95 4.93 86.31 0.43 3.38 16 21 C 0.07 2.22 5.13 86.31 0.44 2.66 16 22 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 23 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 24 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.05 1.05 6.09 -2.39 -0.01 1.04 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.02 0.99 6.48 -2.38 -0.02 0.97 16 33 H 0.02 1.14 6.48 -2.38 -0.02 1.13 16 34 H 0.02 1.26 6.56 -2.39 -0.02 1.24 16 35 H 0.06 3.48 6.07 -2.39 -0.01 3.46 16 36 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 37 H 0.02 0.69 6.57 -2.39 -0.02 0.67 16 38 H 0.07 2.98 6.14 -2.38 -0.01 2.96 16 39 H 0.08 2.51 5.95 -2.39 -0.01 2.50 16 40 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -63.77 303.68 -1.41 -65.18 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 1.00 Total: 10.46 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 5.28 Total: -7.41 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -8.13 Total: -102.62 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -1.58 Total: -11.77 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -63.77 -1.41 -65.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171052207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.996 kcal (2) G-P(sol) polarization free energy of solvation -63.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds