Wall clock time and date at job start Mon Mar 30 2020 05:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 114.00116 * 2 1 4 4 C 1.52994 * 109.47167 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47486 * 64.37129 * 4 3 2 6 6 C 1.46961 * 110.99657 * 283.56930 * 5 4 3 7 7 C 1.53056 * 109.35879 * 183.18550 * 6 5 4 8 8 N 1.46956 * 109.36549 * 301.59883 * 7 6 5 9 9 C 1.46897 * 110.99844 * 183.19294 * 8 7 6 10 10 H 1.09005 * 109.47697 * 54.99709 * 9 8 7 11 11 C 1.53003 * 109.47262 * 294.99784 * 9 8 7 12 12 C 1.50700 * 109.47106 * 174.99921 * 9 8 7 13 13 H 1.08001 * 120.00092 * 0.81508 * 12 9 8 14 14 C 1.37881 * 120.00165 * 181.09140 * 12 9 8 15 15 N 1.31520 * 119.99624 * 357.48346 * 14 12 9 16 16 Si 1.86795 * 120.00390 * 177.48052 * 14 12 9 17 17 H 1.48500 * 109.47033 * 94.98397 * 16 14 12 18 18 H 1.48499 * 109.47604 * 214.98809 * 16 14 12 19 19 H 1.48506 * 109.46856 * 334.98851 * 16 14 12 20 20 C 1.46947 * 110.88231 * 59.32413 * 8 7 6 21 21 C 1.46956 * 110.99761 * 47.36779 * 5 4 3 22 22 H 1.08994 * 109.47112 * 59.99347 * 1 2 3 23 23 H 1.09002 * 109.47228 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46574 * 299.99471 * 1 2 3 25 25 H 1.08997 * 109.46947 * 60.00109 * 3 2 1 26 26 H 1.08998 * 109.47109 * 300.00156 * 3 2 1 27 27 H 1.08999 * 109.47174 * 304.37031 * 4 3 2 28 28 H 1.09003 * 109.47304 * 184.37307 * 4 3 2 29 29 H 1.09002 * 109.49025 * 63.22379 * 6 5 4 30 30 H 1.08998 * 109.49148 * 303.14865 * 6 5 4 31 31 H 1.09001 * 109.48537 * 181.62933 * 7 6 5 32 32 H 1.09000 * 109.50456 * 61.57784 * 7 6 5 33 33 H 1.08992 * 109.47632 * 173.87407 * 11 9 8 34 34 H 1.09002 * 109.46651 * 293.87845 * 11 9 8 35 35 H 1.08999 * 109.46783 * 53.87268 * 11 9 8 36 36 H 0.97003 * 119.99704 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.49420 * 60.64279 * 20 8 7 38 38 H 1.08998 * 109.49097 * 180.71540 * 20 8 7 39 39 H 1.09007 * 109.48445 * 296.77708 * 21 5 4 40 40 H 1.08993 * 109.48909 * 56.84776 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9759 0.5490 -1.2496 6 6 3.7328 -0.9000 -1.2173 7 6 4.2762 -1.5344 -2.4998 8 7 3.6218 -0.9193 -3.6629 9 6 4.0621 -1.5549 -4.9119 10 1 3.8903 -2.6298 -4.8529 11 6 5.5539 -1.2877 -5.1219 12 6 3.2820 -0.9843 -6.0681 13 1 2.5432 -0.2160 -5.8943 14 6 3.5074 -1.4472 -7.3472 15 7 4.4376 -2.3511 -7.5650 16 14 2.4915 -0.7907 -8.7707 17 1 3.2207 0.3246 -9.4262 18 1 2.2596 -1.8772 -9.7560 19 1 1.1867 -0.2973 -8.2615 20 6 3.8648 0.5296 -3.6952 21 6 3.3214 1.1641 -2.4128 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8901 25 1 1.6887 1.8463 0.8900 26 1 1.6887 1.8464 -0.8900 27 1 3.8522 0.5774 0.8473 28 1 3.9787 2.1774 0.0777 29 1 2.6614 -1.0875 -1.1446 30 1 4.2378 -1.3343 -0.3545 31 1 4.0712 -2.6049 -2.4910 32 1 5.3522 -1.3707 -2.5591 33 1 5.9050 -1.8479 -5.9884 34 1 5.7120 -0.2223 -5.2894 35 1 6.1074 -1.6024 -4.2371 36 1 4.5964 -2.6765 -8.4649 37 1 4.9361 0.7172 -3.7680 38 1 3.3598 0.9639 -4.5580 39 1 2.2454 1.0000 -2.3535 40 1 3.5265 2.2346 -2.4215 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171052210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:54 Heat of formation + Delta-G solvation = -47.323043 kcal Electronic energy + Delta-G solvation = -18840.105495 eV Core-core repulsion = 16075.520677 eV Total energy + Delta-G solvation = -2764.584818 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.61051 -38.80508 -36.89713 -34.59185 -31.92015 -31.62981 -29.55287 -27.40616 -27.30619 -26.01578 -24.50836 -23.17314 -21.94976 -20.01765 -18.23680 -17.56252 -17.35781 -16.87492 -16.39534 -16.00474 -15.66467 -15.62782 -15.40931 -14.56857 -14.43477 -14.38778 -13.60243 -13.50305 -13.07299 -12.96811 -12.85588 -12.65565 -12.54342 -12.38360 -12.30973 -12.10203 -12.02838 -11.84933 -11.59005 -11.23750 -10.81879 -10.52195 -10.50704 -9.13352 -8.78524 -8.09944 -6.20729 1.42080 1.43097 1.54389 2.43481 2.81440 3.18415 3.19884 3.42537 4.02176 4.18143 4.23843 4.34821 4.40008 4.41333 4.47966 4.55663 4.59311 4.63988 4.73158 4.77029 4.82390 4.86829 4.92789 4.97581 5.06122 5.06675 5.19241 5.21126 5.38247 5.54645 5.72017 5.79511 6.12929 6.19509 6.23150 6.29621 6.53175 6.78466 6.93155 7.48358 8.96783 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.030776 B = 0.006250 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.576151 B = 4479.213882 C = 4860.996180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.405 6.405 3 C 0.021 3.979 4 C 0.057 3.943 5 N -0.542 5.542 6 C 0.068 3.932 7 C 0.054 3.946 8 N -0.539 5.539 9 C 0.215 3.785 10 H 0.003 0.997 11 C -0.149 4.149 12 C -0.514 4.514 13 H 0.056 0.944 14 C 0.010 3.990 15 N -0.922 5.922 16 Si 0.961 3.039 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.269 1.269 20 C 0.069 3.931 21 C 0.067 3.933 22 H 0.035 0.965 23 H 0.087 0.913 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.023 0.977 33 H 0.057 0.943 34 H 0.027 0.973 35 H 0.023 0.977 36 H 0.261 0.739 37 H 0.020 0.980 38 H 0.064 0.936 39 H 0.036 0.964 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.454 7.918 15.357 17.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C -0.057 4.057 4 C -0.071 4.071 5 N -0.266 5.266 6 C -0.060 4.060 7 C -0.075 4.075 8 N -0.264 5.264 9 C 0.107 3.893 10 H 0.021 0.979 11 C -0.208 4.208 12 C -0.552 4.552 13 H 0.075 0.925 14 C -0.189 4.189 15 N -0.562 5.562 16 Si 0.786 3.214 17 H -0.202 1.202 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.059 4.059 21 C -0.061 4.061 22 H 0.054 0.946 23 H 0.105 0.895 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.127 0.873 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.271 7.641 15.220 17.558 hybrid contribution -0.474 0.097 -1.170 1.266 sum -4.745 7.738 14.050 16.728 Atomic orbital electron populations 1.22817 0.80536 1.03190 1.00291 1.87949 1.20698 1.28525 1.95319 1.23428 0.95988 0.85120 1.01164 1.22428 0.90922 1.01616 0.92125 1.62333 1.57541 1.03918 1.02834 1.22198 1.00508 0.87560 0.95769 1.22154 0.95978 0.98110 0.91273 1.62385 1.57609 1.03506 1.02851 1.19047 0.90675 0.92989 0.86556 0.97933 1.22135 0.99803 0.99328 0.99583 1.21361 1.20624 1.21447 0.91799 0.92549 1.25727 0.96392 0.95453 1.01288 1.70043 1.33114 1.31252 1.21764 0.85501 0.79151 0.77881 0.78829 1.20164 1.20923 1.19361 1.21944 0.97910 0.88796 0.97283 1.22145 0.96318 0.98425 0.89256 0.94602 0.89496 0.92514 0.91141 0.93245 0.89638 0.87280 0.92361 0.90130 0.92113 0.95852 0.92390 0.95412 0.95768 0.93015 0.96155 0.91749 0.94560 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.80 16 2 O -0.41 -10.26 7.82 -148.98 -1.16 -11.42 16 3 C 0.02 0.43 5.43 71.98 0.39 0.82 16 4 C 0.06 1.21 6.05 86.30 0.52 1.73 16 5 N -0.54 -15.92 4.92 -895.70 -4.40 -20.33 16 6 C 0.07 2.18 5.19 86.31 0.45 2.63 16 7 C 0.05 2.10 5.26 86.31 0.45 2.56 16 8 N -0.54 -24.42 4.69 -874.87 -4.10 -28.52 16 9 C 0.21 11.40 2.35 44.17 0.10 11.51 16 10 H 0.00 0.16 8.11 -2.38 -0.02 0.14 16 11 C -0.15 -7.64 8.13 71.98 0.59 -7.05 16 12 C -0.51 -29.01 7.90 25.60 0.20 -28.81 16 13 H 0.06 3.17 6.74 -2.91 -0.02 3.15 16 14 C 0.01 0.55 5.33 84.65 0.45 1.00 16 15 N -0.92 -54.20 11.37 21.45 0.24 -53.95 16 16 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 20 C 0.07 2.82 4.86 86.31 0.42 3.24 16 21 C 0.07 2.11 4.71 86.31 0.41 2.52 16 22 H 0.04 0.73 8.14 -2.39 -0.02 0.72 16 23 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.05 1.09 6.11 -2.39 -0.01 1.07 16 27 H 0.09 1.71 7.90 -2.39 -0.02 1.69 16 28 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 2.03 5.58 -2.39 -0.01 2.01 16 30 H 0.08 2.30 8.02 -2.39 -0.02 2.28 16 31 H 0.06 2.41 8.12 -2.39 -0.02 2.39 16 32 H 0.02 0.95 6.47 -2.39 -0.02 0.94 16 33 H 0.06 3.25 6.25 -2.39 -0.01 3.24 16 34 H 0.03 1.38 6.81 -2.39 -0.02 1.37 16 35 H 0.02 1.12 6.32 -2.39 -0.02 1.10 16 36 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 37 H 0.02 0.87 6.61 -2.39 -0.02 0.85 16 38 H 0.06 2.83 6.43 -2.39 -0.02 2.81 16 39 H 0.04 1.21 6.32 -2.38 -0.02 1.19 16 40 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -63.44 298.83 -1.17 -64.61 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 1.00 Total: 11.24 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 5.23 Total: -8.06 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -8.26 Total: -102.81 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -1.16 Total: -11.42 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -63.44 -1.17 -64.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171052210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.284 kcal (2) G-P(sol) polarization free energy of solvation -63.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds