Wall clock time and date at job start Mon Mar 30 2020 04:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47029 * 2 1 4 4 C 1.50699 * 109.47493 * 120.00670 * 2 1 3 5 5 H 1.07997 * 120.00353 * 114.84184 * 4 2 1 6 6 C 1.37884 * 119.99651 * 294.84450 * 4 2 1 7 7 N 1.31513 * 119.99677 * 359.97438 * 6 4 2 8 8 Si 1.86789 * 119.99934 * 179.97438 * 6 4 2 9 9 H 1.48510 * 109.47352 * 59.99973 * 8 6 4 10 10 H 1.48501 * 109.47270 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47397 * 299.99887 * 8 6 4 12 12 N 1.46908 * 109.46807 * 240.00495 * 2 1 3 13 13 C 1.46962 * 110.99690 * 297.36460 * 12 2 1 14 14 C 1.53048 * 109.35848 * 176.81129 * 13 12 2 15 15 N 1.46956 * 109.36721 * 58.40529 * 14 13 12 16 16 C 1.46898 * 111.00301 * 176.80486 * 15 14 13 17 17 C 1.52994 * 109.47216 * 287.09963 * 16 15 14 18 18 O 1.42905 * 109.46965 * 67.15190 * 17 16 15 19 19 C 1.46960 * 110.87893 * 300.67854 * 15 14 13 20 20 H 1.09002 * 109.48246 * 299.32657 * 19 15 14 21 21 C 1.53001 * 109.49071 * 179.28877 * 19 15 14 22 22 C 1.46953 * 110.99802 * 173.56823 * 12 2 1 23 23 H 1.09003 * 109.46921 * 299.99182 * 1 2 3 24 24 H 1.09001 * 109.47389 * 59.99511 * 1 2 3 25 25 H 1.09002 * 109.47360 * 179.97438 * 1 2 3 26 26 H 0.97003 * 119.99934 * 180.02562 * 7 6 4 27 27 H 1.08993 * 109.48864 * 296.77948 * 13 12 2 28 28 H 1.08994 * 109.48841 * 56.82708 * 13 12 2 29 29 H 1.09000 * 109.49390 * 298.43628 * 14 13 12 30 30 H 1.09000 * 109.48669 * 178.36640 * 14 13 12 31 31 H 1.09001 * 109.47226 * 167.09564 * 16 15 14 32 32 H 1.09005 * 109.46870 * 47.10428 * 16 15 14 33 33 H 1.09001 * 109.46819 * 187.14398 * 17 16 15 34 34 H 1.08993 * 109.47374 * 307.14882 * 17 16 15 35 35 H 0.96701 * 113.99669 * 180.02562 * 18 17 16 36 36 H 1.08995 * 109.47091 * 59.99378 * 21 19 15 37 37 H 1.08998 * 109.47102 * 179.97438 * 21 19 15 38 38 H 1.09006 * 109.46651 * 299.99459 * 21 19 15 39 39 H 1.09001 * 109.49288 * 63.21630 * 22 12 2 40 40 H 1.09004 * 109.50491 * 303.16473 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5829 -1.6346 1.1334 6 6 1.7892 -0.1808 2.4799 7 7 1.1193 0.9447 2.5979 8 14 2.4113 -1.0618 4.0050 9 1 3.8911 -1.1723 3.9440 10 1 2.0224 -0.2926 5.2143 11 1 1.8158 -2.4207 4.0693 12 7 2.0196 -0.6924 -1.1996 13 6 1.6005 -2.1010 -1.2024 14 6 2.0611 -2.7647 -2.5024 15 7 3.5220 -2.6527 -2.6158 16 6 4.0116 -3.3452 -3.8152 17 6 3.9298 -4.8577 -3.6000 18 8 2.5592 -5.2542 -3.5210 19 6 3.9411 -1.2441 -2.6128 20 1 3.4929 -0.7297 -3.4628 21 6 5.4657 -1.1649 -2.7141 22 6 3.4805 -0.5804 -1.3129 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 0.9485 1.3176 3.4770 27 1 2.0490 -2.6156 -0.3527 28 1 0.5145 -2.1574 -1.1299 29 1 1.5913 -2.2674 -3.3510 30 1 1.7767 -3.8169 -2.4940 31 1 5.0470 -3.0602 -4.0021 32 1 3.3978 -3.0663 -4.6717 33 1 4.4086 -5.3698 -4.4346 34 1 4.4382 -5.1207 -2.6724 35 1 2.4315 -6.2029 -3.3843 36 1 5.7935 -1.6395 -3.6390 37 1 5.7761 -0.1201 -2.7123 38 1 5.9135 -1.6789 -1.8635 39 1 3.9503 -1.0777 -0.4643 40 1 3.7653 0.4718 -1.3211 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187127631.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:32 Heat of formation + Delta-G solvation = -35.231138 kcal Electronic energy + Delta-G solvation = -18928.572913 eV Core-core repulsion = 16164.512440 eV Total energy + Delta-G solvation = -2764.060473 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.10482 -36.92876 -35.35414 -32.49929 -31.87774 -30.08655 -28.23077 -26.64966 -25.02492 -24.16606 -22.02199 -21.41727 -19.51327 -18.94632 -17.51211 -16.25164 -15.70844 -15.01689 -14.85569 -14.64836 -14.32946 -13.76230 -13.33749 -12.95762 -12.88648 -12.42673 -12.21263 -11.69317 -11.51365 -11.49208 -11.31777 -11.08235 -10.92954 -10.61206 -10.45574 -10.42505 -10.36423 -10.00349 -9.95262 -9.60168 -9.30395 -9.07037 -8.33538 -7.89413 -7.02268 -5.93478 -4.04463 3.32716 3.37198 3.40564 4.19474 4.32924 4.45766 5.07914 5.14032 5.27550 5.33098 5.35087 5.48164 5.60888 5.64488 5.78613 5.91590 6.04341 6.12216 6.13160 6.23735 6.31577 6.48375 6.56262 6.79978 6.87187 7.01105 7.02067 7.10145 7.25603 7.49844 7.55395 7.63579 7.68254 7.77800 8.02424 8.23884 8.40895 8.53183 9.06354 9.62560 11.08192 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.026506 B = 0.006742 C = 0.006642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.100067 B = 4152.269423 C = 4214.521390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.206 3.794 3 H 0.040 0.960 4 C -0.539 4.539 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.889 5.889 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.541 5.541 13 C 0.062 3.938 14 C 0.054 3.946 15 N -0.529 5.529 16 C 0.047 3.953 17 C 0.082 3.918 18 O -0.565 6.565 19 C 0.080 3.920 20 H 0.039 0.961 21 C -0.145 4.145 22 C 0.074 3.926 23 H 0.074 0.926 24 H 0.015 0.985 25 H 0.027 0.973 26 H 0.261 0.739 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.025 0.975 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.036 0.964 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.371 0.629 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.046 0.954 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.815 -8.722 -11.436 15.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.100 3.900 3 H 0.058 0.942 4 C -0.578 4.578 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.266 5.266 13 C -0.067 4.067 14 C -0.073 4.073 15 N -0.254 5.254 16 C -0.082 4.082 17 C 0.004 3.996 18 O -0.371 6.371 19 C -0.028 4.028 20 H 0.057 0.943 21 C -0.203 4.203 22 C -0.055 4.055 23 H 0.092 0.908 24 H 0.034 0.966 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.043 0.957 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.218 0.782 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.640 -7.919 -11.379 14.967 hybrid contribution 0.466 -1.020 1.050 1.536 sum 6.106 -8.939 -10.329 14.963 Atomic orbital electron populations 1.21742 0.98046 0.98936 0.99695 1.19247 0.92040 0.94231 0.84476 0.94235 1.21707 1.35425 1.08872 0.91816 0.92433 1.24915 0.94968 0.94796 0.98820 1.69909 1.40154 1.19091 1.23634 0.86743 0.79288 0.79806 0.82664 1.20397 1.21333 1.20354 1.62663 1.09602 1.12392 1.41908 1.22005 0.99668 0.89603 0.95388 1.22531 0.85759 1.01668 0.97381 1.62195 1.13256 1.13220 1.36760 1.22251 1.00749 0.92749 0.92410 1.22225 0.82808 0.95079 0.99504 1.86565 1.25886 1.28623 1.96026 1.21750 0.94518 0.88000 0.98578 0.94309 1.21904 0.95356 1.01612 1.01454 1.21879 0.90065 0.98891 0.94662 0.90754 0.96608 0.95349 0.92950 0.93723 0.91247 0.95689 0.88415 0.89418 0.94618 0.93999 0.92825 0.78217 0.93065 0.92238 0.91882 0.93608 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.87 37.16 0.33 -2.81 16 2 C 0.21 5.32 2.25 -68.86 -0.15 5.16 16 3 H 0.04 1.12 8.09 -51.93 -0.42 0.70 16 4 C -0.54 -14.85 7.08 -34.44 -0.24 -15.10 16 5 H 0.06 1.61 5.81 -52.49 -0.31 1.31 16 6 C 0.07 1.88 5.32 -17.82 -0.09 1.78 16 7 N -0.89 -25.66 11.71 55.43 0.65 -25.02 16 8 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 N -0.54 -12.19 4.69 -227.88 -1.07 -13.25 16 13 C 0.06 1.31 4.96 -3.77 -0.02 1.29 16 14 C 0.05 0.98 5.27 -3.77 -0.02 0.96 16 15 N -0.53 -8.75 4.48 -226.50 -1.01 -9.77 16 16 C 0.05 0.61 5.36 -3.83 -0.02 0.59 16 17 C 0.08 0.92 7.34 37.15 0.27 1.19 16 18 O -0.57 -6.74 10.64 -35.23 -0.38 -7.12 16 19 C 0.08 1.35 2.56 -67.65 -0.17 1.18 16 20 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 21 C -0.15 -1.97 8.93 37.16 0.33 -1.64 16 22 C 0.07 1.52 4.62 -3.77 -0.02 1.50 16 23 H 0.07 2.00 6.49 -51.93 -0.34 1.66 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.03 0.67 6.39 -51.93 -0.33 0.34 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.04 1.04 6.34 -51.93 -0.33 0.71 16 28 H 0.07 1.48 6.21 -51.93 -0.32 1.16 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.10 1.69 5.22 -51.93 -0.27 1.42 16 31 H 0.09 1.00 5.47 -51.93 -0.28 0.72 16 32 H 0.04 0.49 8.04 -51.93 -0.42 0.08 16 33 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.37 2.72 9.12 45.56 0.42 3.14 16 36 H 0.05 0.59 6.02 -51.93 -0.31 0.27 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.05 1.04 7.09 -51.93 -0.37 0.67 16 40 H 0.06 1.31 8.11 -51.93 -0.42 0.89 16 LS Contribution 298.66 15.07 4.50 4.50 Total: -1.00 -30.12 298.66 -7.94 -38.06 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.80 Total: 1.86 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 0.19 Total: -5.89 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -1.43 Total: -48.04 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.38 Total: -7.12 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.12 -7.94 -38.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187127631.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.827 kcal (2) G-P(sol) polarization free energy of solvation -30.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds