Wall clock time and date at job start Mon Mar 30 2020 04:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47029 * 2 1 4 4 C 1.50699 * 109.47493 * 120.00670 * 2 1 3 5 5 H 1.07997 * 120.00353 * 114.84184 * 4 2 1 6 6 C 1.37884 * 119.99651 * 294.84450 * 4 2 1 7 7 N 1.31513 * 119.99677 * 359.97438 * 6 4 2 8 8 Si 1.86789 * 119.99934 * 179.97438 * 6 4 2 9 9 H 1.48510 * 109.47352 * 59.99973 * 8 6 4 10 10 H 1.48501 * 109.47270 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47397 * 299.99887 * 8 6 4 12 12 N 1.46908 * 109.46807 * 240.00495 * 2 1 3 13 13 C 1.46962 * 110.99690 * 297.36460 * 12 2 1 14 14 C 1.53048 * 109.35848 * 176.81129 * 13 12 2 15 15 N 1.46956 * 109.36721 * 58.40529 * 14 13 12 16 16 C 1.46898 * 111.00301 * 176.80486 * 15 14 13 17 17 C 1.52994 * 109.47216 * 287.09963 * 16 15 14 18 18 O 1.42905 * 109.46965 * 67.15190 * 17 16 15 19 19 C 1.46960 * 110.87893 * 300.67854 * 15 14 13 20 20 H 1.09002 * 109.48246 * 299.32657 * 19 15 14 21 21 C 1.53001 * 109.49071 * 179.28877 * 19 15 14 22 22 C 1.46953 * 110.99802 * 173.56823 * 12 2 1 23 23 H 1.09003 * 109.46921 * 299.99182 * 1 2 3 24 24 H 1.09001 * 109.47389 * 59.99511 * 1 2 3 25 25 H 1.09002 * 109.47360 * 179.97438 * 1 2 3 26 26 H 0.97003 * 119.99934 * 180.02562 * 7 6 4 27 27 H 1.08993 * 109.48864 * 296.77948 * 13 12 2 28 28 H 1.08994 * 109.48841 * 56.82708 * 13 12 2 29 29 H 1.09000 * 109.49390 * 298.43628 * 14 13 12 30 30 H 1.09000 * 109.48669 * 178.36640 * 14 13 12 31 31 H 1.09001 * 109.47226 * 167.09564 * 16 15 14 32 32 H 1.09005 * 109.46870 * 47.10428 * 16 15 14 33 33 H 1.09001 * 109.46819 * 187.14398 * 17 16 15 34 34 H 1.08993 * 109.47374 * 307.14882 * 17 16 15 35 35 H 0.96701 * 113.99669 * 180.02562 * 18 17 16 36 36 H 1.08995 * 109.47091 * 59.99378 * 21 19 15 37 37 H 1.08998 * 109.47102 * 179.97438 * 21 19 15 38 38 H 1.09006 * 109.46651 * 299.99459 * 21 19 15 39 39 H 1.09001 * 109.49288 * 63.21630 * 22 12 2 40 40 H 1.09004 * 109.50491 * 303.16473 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5829 -1.6346 1.1334 6 6 1.7892 -0.1808 2.4799 7 7 1.1193 0.9447 2.5979 8 14 2.4113 -1.0618 4.0050 9 1 3.8911 -1.1723 3.9440 10 1 2.0224 -0.2926 5.2143 11 1 1.8158 -2.4207 4.0693 12 7 2.0196 -0.6924 -1.1996 13 6 1.6005 -2.1010 -1.2024 14 6 2.0611 -2.7647 -2.5024 15 7 3.5220 -2.6527 -2.6158 16 6 4.0116 -3.3452 -3.8152 17 6 3.9298 -4.8577 -3.6000 18 8 2.5592 -5.2542 -3.5210 19 6 3.9411 -1.2441 -2.6128 20 1 3.4929 -0.7297 -3.4628 21 6 5.4657 -1.1649 -2.7141 22 6 3.4805 -0.5804 -1.3129 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 0.9485 1.3176 3.4770 27 1 2.0490 -2.6156 -0.3527 28 1 0.5145 -2.1574 -1.1299 29 1 1.5913 -2.2674 -3.3510 30 1 1.7767 -3.8169 -2.4940 31 1 5.0470 -3.0602 -4.0021 32 1 3.3978 -3.0663 -4.6717 33 1 4.4086 -5.3698 -4.4346 34 1 4.4382 -5.1207 -2.6724 35 1 2.4315 -6.2029 -3.3843 36 1 5.7935 -1.6395 -3.6390 37 1 5.7761 -0.1201 -2.7123 38 1 5.9135 -1.6789 -1.8635 39 1 3.9503 -1.0777 -0.4643 40 1 3.7653 0.4718 -1.3211 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187127631.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:31 Heat of formation + Delta-G solvation = -59.140972 kcal Electronic energy + Delta-G solvation = -18929.609722 eV Core-core repulsion = 16164.512440 eV Total energy + Delta-G solvation = -2765.097282 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.56422 -38.15441 -36.79109 -34.46931 -33.23998 -31.72914 -29.76844 -28.00533 -27.17401 -25.66337 -23.60321 -22.59033 -21.28126 -20.57635 -18.42728 -18.22431 -17.20471 -16.63777 -16.25944 -16.00800 -15.88072 -15.36265 -15.06238 -14.47035 -14.20111 -13.85974 -13.66553 -13.39829 -13.03959 -12.87973 -12.83583 -12.72202 -12.56113 -12.43530 -12.18574 -12.08773 -11.89513 -11.85355 -11.48130 -11.17250 -11.07255 -10.58217 -10.48763 -9.21489 -8.93917 -8.06379 -6.26745 1.37484 1.37942 1.46061 2.39946 2.98200 3.14915 3.39037 3.52003 4.01787 4.13687 4.20607 4.34561 4.43810 4.51815 4.53851 4.63543 4.66999 4.74475 4.81088 4.88772 5.00710 5.01437 5.07341 5.09837 5.17590 5.21547 5.24936 5.34306 5.42741 5.51789 5.67482 5.90718 6.17158 6.20304 6.26721 6.40670 6.63615 6.93163 7.01703 7.43711 8.91974 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.026506 B = 0.006742 C = 0.006642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.100067 B = 4152.269423 C = 4214.521390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.210 3.790 3 H 0.006 0.994 4 C -0.547 4.547 5 H 0.048 0.952 6 C 0.020 3.980 7 N -0.915 5.915 8 Si 0.948 3.052 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.274 1.274 12 N -0.542 5.542 13 C 0.068 3.932 14 C 0.068 3.932 15 N -0.539 5.539 16 C 0.044 3.956 17 C 0.084 3.916 18 O -0.588 6.588 19 C 0.086 3.914 20 H 0.036 0.964 21 C -0.137 4.137 22 C 0.076 3.924 23 H 0.051 0.949 24 H 0.029 0.971 25 H 0.032 0.968 26 H 0.262 0.738 27 H 0.019 0.981 28 H 0.063 0.937 29 H 0.019 0.981 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.032 0.968 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.391 0.609 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.019 0.981 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.016 -10.294 -12.570 17.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.102 3.898 3 H 0.024 0.976 4 C -0.586 4.586 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.554 5.554 8 Si 0.774 3.226 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.199 1.199 12 N -0.266 5.266 13 C -0.061 4.061 14 C -0.060 4.060 15 N -0.265 5.265 16 C -0.084 4.084 17 C 0.006 3.994 18 O -0.397 6.397 19 C -0.023 4.023 20 H 0.054 0.946 21 C -0.195 4.195 22 C -0.053 4.053 23 H 0.070 0.930 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.037 0.963 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.241 0.759 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.850 -9.518 -12.530 17.161 hybrid contribution 0.088 -0.536 1.362 1.466 sum 6.938 -10.054 -11.168 16.551 Atomic orbital electron populations 1.21566 0.97449 0.99003 0.99194 1.19058 0.92507 0.92694 0.85510 0.97577 1.21848 1.35370 1.08586 0.92827 0.93370 1.25639 0.95184 0.95499 1.01612 1.70023 1.40932 1.20182 1.24310 0.85765 0.78753 0.78782 0.79270 1.20029 1.20617 1.19898 1.62632 1.10995 1.13133 1.39857 1.21971 0.99129 0.88563 0.96428 1.22356 0.87035 1.01694 0.94924 1.62197 1.12030 1.13057 1.39176 1.22437 1.01635 0.93799 0.90479 1.22231 0.82709 0.93837 1.00610 1.86468 1.26424 1.30706 1.96104 1.21672 0.96774 0.88057 0.95763 0.94603 1.21850 0.92409 1.02560 1.02665 1.21912 0.88571 0.98764 0.96093 0.93022 0.95212 0.94876 0.92840 0.96302 0.91895 0.96239 0.87302 0.87250 0.94987 0.90790 0.93271 0.75918 0.90140 0.91402 0.92495 0.96251 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.79 8.87 71.98 0.64 -5.15 16 2 C 0.21 11.14 2.25 44.17 0.10 11.24 16 3 H 0.01 0.37 8.09 -2.39 -0.02 0.35 16 4 C -0.55 -30.90 7.08 25.60 0.18 -30.72 16 5 H 0.05 2.77 5.81 -2.91 -0.02 2.76 16 6 C 0.02 1.15 5.32 84.66 0.45 1.60 16 7 N -0.92 -53.79 11.71 21.45 0.25 -53.53 16 8 Si 0.95 44.77 29.54 68.60 2.03 46.79 16 9 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 12 N -0.54 -24.90 4.69 -874.87 -4.10 -29.00 16 13 C 0.07 2.89 4.96 86.31 0.43 3.32 16 14 C 0.07 2.38 5.27 86.31 0.45 2.83 16 15 N -0.54 -16.97 4.48 -870.50 -3.90 -20.87 16 16 C 0.04 1.02 5.36 86.30 0.46 1.48 16 17 C 0.08 1.60 7.34 71.98 0.53 2.13 16 18 O -0.59 -12.46 10.64 -148.98 -1.59 -14.05 16 19 C 0.09 2.79 2.56 44.92 0.12 2.91 16 20 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 21 C -0.14 -3.39 8.93 71.98 0.64 -2.75 16 22 C 0.08 3.15 4.62 86.31 0.40 3.55 16 23 H 0.05 2.84 6.49 -2.39 -0.02 2.83 16 24 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.03 1.60 6.39 -2.39 -0.02 1.58 16 26 H 0.26 14.68 8.31 -92.71 -0.77 13.90 16 27 H 0.02 0.90 6.34 -2.39 -0.02 0.88 16 28 H 0.06 2.71 6.21 -2.39 -0.01 2.70 16 29 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 30 H 0.11 3.62 5.22 -2.39 -0.01 3.61 16 31 H 0.11 2.05 5.47 -2.39 -0.01 2.03 16 32 H 0.03 0.79 8.04 -2.38 -0.02 0.77 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.39 4.68 9.12 -74.06 -0.68 4.01 16 36 H 0.08 1.53 6.02 -2.39 -0.01 1.52 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.02 0.90 7.09 -2.39 -0.02 0.88 16 40 H 0.06 2.41 8.11 -2.39 -0.02 2.39 16 Total: -1.00 -65.43 298.66 -2.56 -67.99 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.35 Total: 12.21 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 4.40 Total: -9.54 kcal Atomic # 7 Polarization: -95.65 SS G_CDS: -7.75 Total: -103.40 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -1.59 Total: -14.05 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -65.43 -2.56 -67.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187127631.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.849 kcal (2) G-P(sol) polarization free energy of solvation -65.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds