Wall clock time and date at job start Mon Mar 30 2020 04:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46966 * 2 1 4 4 C 1.50701 * 109.47242 * 119.99945 * 2 1 3 5 5 H 1.08001 * 119.99740 * 114.86931 * 4 2 1 6 6 C 1.37878 * 120.00068 * 294.86706 * 4 2 1 7 7 N 1.31506 * 119.99969 * 156.57302 * 6 4 2 8 8 Si 1.86800 * 119.99968 * 336.30637 * 6 4 2 9 9 H 1.48496 * 109.47086 * 180.27001 * 8 6 4 10 10 H 1.48493 * 109.47232 * 300.27414 * 8 6 4 11 11 H 1.48510 * 109.47206 * 60.27114 * 8 6 4 12 12 N 1.46906 * 109.47466 * 240.00186 * 2 1 3 13 13 C 1.46953 * 110.99502 * 306.04533 * 12 2 1 14 14 C 1.53058 * 109.36105 * 183.18934 * 13 12 2 15 15 N 1.46956 * 109.36315 * 301.59603 * 14 13 12 16 16 C 1.46900 * 111.00181 * 183.19263 * 15 14 13 17 17 C 1.52998 * 109.47222 * 66.04490 * 16 15 14 18 18 O 1.42893 * 109.47050 * 65.00395 * 17 16 15 19 19 C 1.46958 * 110.87872 * 59.32059 * 15 14 13 20 20 H 1.08996 * 109.48538 * 60.64657 * 19 15 14 21 21 C 1.52999 * 109.48677 * 180.69215 * 19 15 14 22 22 C 1.46956 * 111.00048 * 69.84189 * 12 2 1 23 23 H 1.08999 * 109.47013 * 65.72857 * 1 2 3 24 24 H 1.09002 * 109.46787 * 185.71747 * 1 2 3 25 25 H 1.08990 * 109.47403 * 305.71947 * 1 2 3 26 26 H 0.97002 * 120.00400 * 354.74726 * 7 6 4 27 27 H 1.08999 * 109.49283 * 303.15306 * 13 12 2 28 28 H 1.09001 * 109.49346 * 63.20244 * 13 12 2 29 29 H 1.08998 * 109.48981 * 61.56466 * 14 13 12 30 30 H 1.09001 * 109.48904 * 181.63440 * 14 13 12 31 31 H 1.08995 * 109.47181 * 186.05306 * 16 15 14 32 32 H 1.09000 * 109.46628 * 306.04488 * 16 15 14 33 33 H 1.09002 * 109.46915 * 185.00467 * 17 16 15 34 34 H 1.09003 * 109.47352 * 304.99843 * 17 16 15 35 35 H 0.96705 * 114.00038 * 179.97438 * 18 17 16 36 36 H 1.08998 * 109.47407 * 59.99690 * 21 19 15 37 37 H 1.09003 * 109.47401 * 180.02562 * 21 19 15 38 38 H 1.09006 * 109.47370 * 299.99940 * 21 19 15 39 39 H 1.09005 * 109.49173 * 296.78396 * 22 12 2 40 40 H 1.09005 * 109.48726 * 56.84372 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5832 -1.6343 1.1335 6 6 1.7888 -0.1809 2.4800 7 7 1.7941 -0.9622 3.5377 8 14 1.4585 1.6477 2.6713 9 1 1.2348 1.9630 4.1050 10 1 2.6266 2.4166 2.1718 11 1 0.2515 2.0173 1.8890 12 7 2.0198 -0.6925 -1.1995 13 6 1.4342 -2.0359 -1.3078 14 6 2.0286 -2.7520 -2.5230 15 7 1.7584 -1.9637 -3.7334 16 6 2.2480 -2.6562 -4.9329 17 6 1.4416 -3.9387 -5.1463 18 8 0.0819 -3.6045 -5.4314 19 6 2.3439 -0.6202 -3.6250 20 1 3.4242 -0.7029 -3.5059 21 6 2.0295 0.1774 -4.8922 22 6 1.7496 0.0959 -2.4099 23 1 -0.3633 0.4224 -0.9368 24 1 -0.3633 -1.0226 0.1024 25 1 -0.3634 0.5999 0.8343 26 1 1.8935 -1.9213 3.4318 27 1 1.6584 -2.6043 -0.4052 28 1 0.3538 -1.9533 -1.4266 29 1 3.1053 -2.8589 -2.3914 30 1 1.5743 -3.7379 -2.6223 31 1 2.1331 -2.0060 -5.8001 32 1 3.3010 -2.9063 -4.8035 33 1 1.8616 -4.4970 -5.9829 34 1 1.4842 -4.5491 -4.2442 35 1 -0.4891 -4.3710 -5.5787 36 1 0.9492 0.2605 -5.0106 37 1 2.4643 1.1737 -4.8117 38 1 2.4515 -0.3339 -5.7575 39 1 0.6728 0.2028 -2.5415 40 1 2.2038 1.0818 -2.3107 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187127647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:35 Heat of formation + Delta-G solvation = -32.491875 kcal Electronic energy + Delta-G solvation = -18830.794244 eV Core-core repulsion = 16066.852553 eV Total energy + Delta-G solvation = -2763.941690 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.34670 -37.03487 -35.57157 -32.65161 -32.17993 -30.39864 -28.33069 -26.84062 -25.20204 -24.27933 -22.19054 -21.48609 -19.73915 -18.79101 -17.45507 -17.20747 -16.15776 -15.20840 -14.72660 -14.52632 -14.26521 -13.98851 -13.42009 -13.31592 -13.06668 -12.71821 -12.54837 -12.05116 -11.81608 -11.72550 -11.35047 -11.29298 -11.19482 -10.99388 -10.73642 -10.38411 -10.24340 -10.07197 -9.89034 -9.69457 -9.67452 -8.94724 -8.10502 -8.03658 -7.24132 -6.41536 -3.97094 3.42519 3.48060 3.64693 4.01700 4.26466 4.55293 4.79466 5.02177 5.06659 5.24490 5.27105 5.31990 5.41728 5.51359 5.61157 5.68455 5.80639 5.84851 5.93434 5.99731 6.03316 6.17012 6.24581 6.38193 6.49754 6.50779 6.57068 6.71075 6.77636 7.01905 7.28624 7.30816 7.40712 7.64751 7.82947 8.12867 8.39893 8.49793 9.03287 9.66570 10.96320 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.036989 B = 0.006244 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.797087 B = 4483.482767 C = 4835.681736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.189 3.811 3 H 0.029 0.971 4 C -0.590 4.590 5 H 0.063 0.937 6 C 0.036 3.964 7 N -0.901 5.901 8 Si 1.035 2.965 9 H -0.286 1.286 10 H -0.283 1.283 11 H -0.278 1.278 12 N -0.524 5.524 13 C 0.068 3.932 14 C 0.055 3.945 15 N -0.524 5.524 16 C 0.048 3.952 17 C 0.081 3.919 18 O -0.557 6.557 19 C 0.085 3.915 20 H 0.044 0.956 21 C -0.144 4.144 22 C 0.058 3.942 23 H 0.023 0.977 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.268 0.732 27 H 0.084 0.916 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.042 0.958 34 H 0.046 0.954 35 H 0.371 0.629 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.036 0.964 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.669 -3.136 -17.260 17.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.082 3.918 3 H 0.046 0.954 4 C -0.628 4.628 5 H 0.081 0.919 6 C -0.169 4.169 7 N -0.535 5.535 8 Si 0.863 3.137 9 H -0.212 1.212 10 H -0.210 1.210 11 H -0.205 1.205 12 N -0.248 5.248 13 C -0.060 4.060 14 C -0.072 4.072 15 N -0.249 5.249 16 C -0.080 4.080 17 C 0.002 3.998 18 O -0.361 6.361 19 C -0.024 4.024 20 H 0.062 0.938 21 C -0.202 4.202 22 C -0.071 4.071 23 H 0.042 0.958 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.216 0.784 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.677 -1.337 -16.032 16.102 hybrid contribution 0.109 -1.849 -1.184 2.198 sum -0.569 -3.186 -17.216 17.517 Atomic orbital electron populations 1.22775 1.01280 1.00992 0.98892 1.19584 0.89204 0.94466 0.88586 0.95352 1.21865 1.39478 1.11224 0.90236 0.91889 1.25607 0.93649 1.05567 0.92113 1.70849 1.44529 1.06113 1.32003 0.84183 0.77052 0.76484 0.75938 1.21194 1.20985 1.20496 1.62405 1.58421 1.02146 1.01827 1.21981 0.96500 0.91191 0.96374 1.22292 0.98715 0.96446 0.89786 1.62139 1.58688 1.02351 1.01762 1.22210 0.95368 0.95399 0.95023 1.22211 0.82980 0.96258 0.98323 1.86626 1.19800 1.35967 1.93712 1.21656 0.96749 0.88718 0.95258 0.93827 1.21878 1.02487 0.99327 0.96513 1.22157 0.98526 0.96557 0.89896 0.95794 0.93259 0.92919 0.92217 0.89753 0.94707 0.94675 0.91212 0.89737 0.93920 0.93937 0.93599 0.78404 0.91845 0.92289 0.92806 0.94596 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.14 8.03 37.16 0.30 -3.84 16 2 C 0.19 4.61 1.90 -68.86 -0.13 4.48 16 3 H 0.03 0.71 6.63 -51.93 -0.34 0.37 16 4 C -0.59 -16.60 8.24 -34.44 -0.28 -16.88 16 5 H 0.06 1.92 7.17 -52.49 -0.38 1.54 16 6 C 0.04 1.05 5.28 -17.82 -0.09 0.95 16 7 N -0.90 -27.57 13.69 55.43 0.76 -26.81 16 8 Si 1.03 25.33 26.58 -169.99 -4.52 20.81 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.37 5.84 56.52 0.33 -6.04 16 12 N -0.52 -11.39 4.65 -227.87 -1.06 -12.45 16 13 C 0.07 1.38 4.77 -3.77 -0.02 1.36 16 14 C 0.06 0.93 5.41 -3.76 -0.02 0.91 16 15 N -0.52 -8.19 4.47 -226.50 -1.01 -9.20 16 16 C 0.05 0.61 5.11 -3.82 -0.02 0.59 16 17 C 0.08 0.88 7.11 37.16 0.26 1.14 16 18 O -0.56 -6.76 13.61 -35.23 -0.48 -7.24 16 19 C 0.08 1.34 2.56 -67.66 -0.17 1.16 16 20 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 21 C -0.14 -1.85 8.89 37.16 0.33 -1.52 16 22 C 0.06 1.07 4.62 -3.77 -0.02 1.05 16 23 H 0.02 0.49 6.53 -51.93 -0.34 0.15 16 24 H 0.05 1.14 6.75 -51.93 -0.35 0.79 16 25 H 0.05 1.23 5.37 -51.93 -0.28 0.96 16 26 H 0.27 8.16 8.73 -40.82 -0.36 7.80 16 27 H 0.08 1.88 6.68 -51.93 -0.35 1.54 16 28 H 0.03 0.73 6.54 -51.93 -0.34 0.39 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.05 6.24 -51.93 -0.32 0.73 16 31 H 0.08 1.03 5.73 -51.93 -0.30 0.73 16 32 H 0.04 0.50 8.12 -51.93 -0.42 0.08 16 33 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.50 6.28 -51.93 -0.33 0.18 16 35 H 0.37 2.74 9.12 45.56 0.42 3.15 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.61 6.15 -51.93 -0.32 0.29 16 39 H 0.04 0.69 6.64 -51.93 -0.34 0.35 16 40 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 LS Contribution 296.44 15.07 4.47 4.47 Total: -1.00 -31.55 296.44 -7.46 -39.01 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.75 Total: 2.02 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 0.14 Total: -10.60 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -1.31 Total: -48.47 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.48 Total: -7.24 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -4.52 Total: 20.81 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.55 -7.46 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187127647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.515 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds