Wall clock time and date at job start Mon Mar 30 2020 05:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99726 * 2 1 4 4 C 1.53000 * 109.47000 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47365 * 305.00427 * 4 3 2 6 6 C 1.53003 * 109.46604 * 65.00427 * 4 3 2 7 7 C 1.53001 * 109.47067 * 185.00009 * 4 3 2 8 8 N 1.46901 * 109.47114 * 175.00149 * 7 4 3 9 9 C 1.46895 * 110.99970 * 294.30435 * 8 7 4 10 10 C 1.53243 * 109.33898 * 172.74582 * 9 8 7 11 11 N 1.47084 * 108.51968 * 53.82918 * 10 9 8 12 12 C 1.36933 * 120.87894 * 128.79690 * 11 10 9 13 13 H 1.08003 * 120.00220 * 206.99324 * 12 11 10 14 14 C 1.38813 * 120.00321 * 26.98542 * 12 11 10 15 15 N 1.31620 * 119.99746 * 17.15668 * 14 12 11 16 16 Si 1.86796 * 120.00271 * 197.14684 * 14 12 11 17 17 H 1.48502 * 109.46946 * 94.12615 * 16 14 12 18 18 H 1.48495 * 109.47702 * 214.12721 * 16 14 12 19 19 H 1.48502 * 109.47488 * 334.13170 * 16 14 12 20 20 C 1.47073 * 118.23891 * 308.81683 * 11 10 9 21 21 C 1.46901 * 110.99730 * 170.00159 * 8 7 4 22 22 H 1.08993 * 109.47341 * 300.00118 * 1 2 3 23 23 H 1.08999 * 109.47103 * 60.00186 * 1 2 3 24 24 H 1.09001 * 109.46480 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46763 * 60.00033 * 3 2 1 26 26 H 1.08996 * 109.47203 * 299.99859 * 3 2 1 27 27 H 1.08999 * 109.46868 * 60.00209 * 6 4 3 28 28 H 1.09005 * 109.46501 * 179.97438 * 6 4 3 29 29 H 1.08991 * 109.47418 * 299.99431 * 6 4 3 30 30 H 1.08998 * 109.47017 * 55.00299 * 7 4 3 31 31 H 1.08998 * 109.47442 * 295.00850 * 7 4 3 32 32 H 1.08999 * 109.49627 * 292.70589 * 9 8 7 33 33 H 1.08996 * 109.49314 * 52.78499 * 9 8 7 34 34 H 1.09002 * 109.62609 * 294.12083 * 10 9 8 35 35 H 1.09000 * 109.79187 * 173.63377 * 10 9 8 36 36 H 0.96997 * 119.99977 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.62931 * 291.47757 * 20 11 10 38 38 H 1.08999 * 109.78932 * 170.99196 * 20 11 10 39 39 H 1.09002 * 109.49307 * 307.21285 * 21 8 7 40 40 H 1.08997 * 109.49272 * 67.26888 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5686 0.8426 6 6 3.9961 0.5366 -1.3065 7 6 4.1572 2.5771 0.1264 8 7 5.6159 2.4528 0.2474 9 6 5.9850 1.7828 1.5014 10 6 7.4931 1.5107 1.5067 11 7 8.1969 2.7758 1.2470 12 6 9.2068 3.1998 2.0688 13 1 9.4199 4.2544 2.1628 14 6 9.9568 2.2741 2.7813 15 7 9.9416 1.0054 2.4311 16 14 10.9877 2.8289 4.2368 17 1 10.2079 2.6590 5.4891 18 1 12.2242 2.0097 4.3088 19 1 11.3506 4.2592 4.0700 20 6 7.7870 3.5736 0.0814 21 6 6.2673 3.7644 0.1322 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 1.6885 1.8464 0.8901 26 1 1.6886 1.8464 -0.8900 27 1 3.6808 1.1529 -2.1484 28 1 5.0828 0.4510 -1.3062 29 1 3.5533 -0.4552 -1.3961 30 1 3.7602 3.0736 1.0117 31 1 3.9147 3.1646 -0.7591 32 1 5.7279 2.4231 2.3453 33 1 5.4449 0.8395 1.5824 34 1 7.7376 0.7889 0.7274 35 1 7.7937 1.1171 2.4777 36 1 10.4653 0.3585 2.9292 37 1 8.0598 3.0501 -0.8349 38 1 8.2792 4.5458 0.1081 39 1 5.9320 4.2582 -0.7799 40 1 6.0060 4.3773 0.9948 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187144031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:44 Heat of formation + Delta-G solvation = -41.867476 kcal Electronic energy + Delta-G solvation = -18278.461183 eV Core-core repulsion = 15514.112936 eV Total energy + Delta-G solvation = -2764.348247 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.05574 -38.86336 -36.74688 -34.63467 -32.75824 -31.63549 -28.85085 -28.12367 -26.87195 -25.62457 -24.36324 -23.84384 -21.08018 -20.64338 -18.71760 -17.54868 -16.99361 -16.82751 -16.39797 -15.89021 -15.73624 -15.32085 -15.28134 -15.12083 -14.74455 -14.30983 -13.70898 -13.34807 -13.18758 -13.05634 -12.91310 -12.62785 -12.43921 -12.33026 -12.06335 -12.01852 -11.86555 -11.77408 -11.67502 -11.41445 -11.20960 -10.59072 -10.56035 -9.21640 -8.67641 -7.87650 -5.32927 1.46348 1.47454 1.57140 2.50561 2.69903 3.21428 3.28627 3.68756 3.89946 4.07700 4.15873 4.32138 4.36612 4.47056 4.50617 4.52568 4.56406 4.61618 4.66594 4.68298 4.74427 4.82906 4.87528 4.94027 4.98742 5.07922 5.20427 5.21803 5.35391 5.39663 5.54475 5.61305 5.67944 6.20507 6.25641 6.35673 6.37806 7.13002 7.83918 8.38654 9.19227 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.041306 B = 0.004868 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.701855 B = 5749.973994 C = 6019.690935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.072 3.928 4 C -0.086 4.086 5 H 0.060 0.940 6 C -0.124 4.124 7 C 0.066 3.934 8 N -0.537 5.537 9 C 0.052 3.948 10 C 0.187 3.813 11 N -0.615 5.615 12 C -0.266 4.266 13 H 0.068 0.932 14 C -0.051 4.051 15 N -0.936 5.936 16 Si 0.969 3.031 17 H -0.286 1.286 18 H -0.294 1.294 19 H -0.267 1.267 20 C 0.144 3.856 21 C 0.056 3.944 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.093 0.907 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.032 0.968 31 H 0.092 0.908 32 H 0.017 0.983 33 H 0.077 0.923 34 H -0.003 1.003 35 H 0.053 0.947 36 H 0.250 0.750 37 H 0.015 0.985 38 H 0.061 0.939 39 H 0.097 0.903 40 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.024 2.468 -5.434 18.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.005 4.005 4 C -0.105 4.105 5 H 0.078 0.922 6 C -0.182 4.182 7 C -0.061 4.061 8 N -0.262 5.262 9 C -0.078 4.078 10 C 0.061 3.939 11 N -0.339 5.339 12 C -0.396 4.396 13 H 0.086 0.914 14 C -0.247 4.247 15 N -0.582 5.582 16 Si 0.797 3.203 17 H -0.213 1.213 18 H -0.221 1.221 19 H -0.191 1.191 20 C 0.018 3.982 21 C -0.073 4.073 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.112 0.888 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.110 0.890 32 H 0.035 0.965 33 H 0.095 0.905 34 H 0.015 0.985 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.033 0.967 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -17.646 1.918 -5.765 18.663 hybrid contribution 0.473 0.540 1.504 1.667 sum -17.174 2.459 -4.261 17.865 Atomic orbital electron populations 1.22905 0.79647 1.03645 1.00811 1.87856 1.21309 1.28728 1.95575 1.22514 0.92598 0.84407 1.00984 1.21075 0.93225 0.96541 0.99653 0.92179 1.21532 1.00785 0.99906 0.95939 1.22060 0.86682 0.96174 1.01212 1.61821 1.08059 1.21128 1.35155 1.22574 0.97535 0.98117 0.89543 1.20579 0.87908 0.86888 0.98493 1.44408 1.38577 1.22895 1.28017 1.19568 1.08816 0.91917 1.19306 0.91413 1.25818 0.99489 0.95978 1.03368 1.70203 1.44464 1.02618 1.40923 0.85221 0.77611 0.77870 0.79553 1.21302 1.22074 1.19149 1.21132 0.93255 0.94825 0.88987 1.22466 0.95097 0.89223 1.00534 0.93406 0.92951 0.88822 0.92826 0.91668 0.92151 0.93547 0.93223 0.94965 0.88998 0.96524 0.90516 0.98537 0.92833 0.94081 0.96684 0.92095 0.88489 0.95864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -9.60 10.24 -148.98 -1.53 -11.13 16 3 C 0.07 1.48 5.32 71.98 0.38 1.87 16 4 C -0.09 -2.19 2.55 -10.79 -0.03 -2.22 16 5 H 0.06 1.79 6.19 -2.39 -0.01 1.77 16 6 C -0.12 -3.25 8.98 71.98 0.65 -2.61 16 7 C 0.07 1.73 4.35 86.30 0.38 2.11 16 8 N -0.54 -18.50 4.08 -895.26 -3.66 -22.15 16 9 C 0.05 2.07 5.46 86.39 0.47 2.55 16 10 C 0.19 9.58 5.42 86.35 0.47 10.04 16 11 N -0.61 -32.33 3.03 -698.12 -2.12 -34.45 16 12 C -0.27 -15.08 9.63 84.03 0.81 -14.28 16 13 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 14 C -0.05 -2.93 4.93 84.86 0.42 -2.51 16 15 N -0.94 -56.95 11.19 21.65 0.24 -56.71 16 16 Si 0.97 45.69 29.59 68.60 2.03 47.72 16 17 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 18 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 20 C 0.14 6.17 6.69 86.35 0.58 6.75 16 21 C 0.06 1.92 5.62 86.38 0.49 2.40 16 22 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.44 7.75 -2.38 -0.02 1.42 16 29 H 0.05 1.30 7.82 -2.39 -0.02 1.28 16 30 H 0.03 0.82 8.12 -2.39 -0.02 0.80 16 31 H 0.09 2.01 7.97 -2.39 -0.02 1.99 16 32 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 2.86 6.07 -2.39 -0.01 2.85 16 34 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 35 H 0.05 3.06 6.14 -2.39 -0.01 3.04 16 36 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 37 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.06 2.49 7.96 -2.39 -0.02 2.47 16 39 H 0.10 2.66 7.99 -2.39 -0.02 2.64 16 40 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -66.12 313.05 1.80 -64.32 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: 0.98 Total: 6.66 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 5.86 Total: 5.74 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -5.53 Total: -113.31 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -1.53 Total: -11.13 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -66.12 1.80 -64.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187144031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.450 kcal (2) G-P(sol) polarization free energy of solvation -66.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds