Wall clock time and date at job start Mon Mar 30 2020 05:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99703 * 2 1 4 4 C 1.53005 * 109.47044 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47014 * 55.00702 * 4 3 2 6 6 C 1.52999 * 109.47419 * 295.00247 * 4 3 2 7 7 C 1.53002 * 109.46996 * 175.00387 * 4 3 2 8 8 N 1.46902 * 109.47146 * 298.13217 * 7 4 3 9 9 C 1.46897 * 111.00252 * 184.28168 * 8 7 4 10 10 C 1.53236 * 109.34087 * 187.25488 * 9 8 7 11 11 N 1.47078 * 108.52172 * 306.16778 * 10 9 8 12 12 C 1.36937 * 120.88166 * 231.19112 * 11 10 9 13 13 H 1.07996 * 120.00164 * 16.50688 * 12 11 10 14 14 C 1.38816 * 119.99828 * 196.23890 * 12 11 10 15 15 N 1.31615 * 119.99856 * 31.34568 * 14 12 11 16 16 Si 1.86793 * 119.99694 * 211.34733 * 14 12 11 17 17 H 1.48503 * 109.47141 * 94.99582 * 16 14 12 18 18 H 1.48504 * 109.47217 * 214.99461 * 16 14 12 19 19 H 1.48506 * 109.47339 * 334.99751 * 16 14 12 20 20 C 1.47077 * 118.23807 * 51.45711 * 11 10 9 21 21 C 1.46905 * 111.00043 * 308.58382 * 8 7 4 22 22 H 1.08999 * 109.47241 * 299.99334 * 1 2 3 23 23 H 1.09004 * 109.47282 * 60.00104 * 1 2 3 24 24 H 1.09003 * 109.46813 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46998 * 60.00394 * 3 2 1 26 26 H 1.08997 * 109.47628 * 299.99807 * 3 2 1 27 27 H 1.08992 * 109.47276 * 184.98667 * 6 4 3 28 28 H 1.09000 * 109.46849 * 304.99464 * 6 4 3 29 29 H 1.09006 * 109.46753 * 64.98407 * 6 4 3 30 30 H 1.09001 * 109.47092 * 178.13778 * 7 4 3 31 31 H 1.08999 * 109.47412 * 58.13643 * 7 4 3 32 32 H 1.09007 * 109.49419 * 67.29346 * 9 8 7 33 33 H 1.09004 * 109.51479 * 307.22850 * 9 8 7 34 34 H 1.09006 * 109.62508 * 186.46121 * 10 9 8 35 35 H 1.08994 * 109.79013 * 65.97414 * 10 9 8 36 36 H 0.97006 * 119.99828 * 180.02562 * 15 14 12 37 37 H 1.09007 * 109.62582 * 68.25246 * 20 11 10 38 38 H 1.08994 * 109.63359 * 188.82927 * 20 11 10 39 39 H 1.09003 * 109.48948 * 292.70584 * 21 8 7 40 40 H 1.09001 * 109.49377 * 52.75940 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8507 0.5687 -0.8428 6 6 3.9963 0.5365 1.3063 7 6 4.1572 2.5771 -0.1263 8 7 3.7506 3.1816 -1.4019 9 6 4.4103 4.4785 -1.6038 10 6 3.8268 5.1564 -2.8481 11 7 3.9300 4.2233 -3.9803 12 6 4.4926 4.6156 -5.1654 13 1 5.0999 5.5078 -5.2057 14 6 4.2870 3.8635 -6.3139 15 7 3.1611 3.2010 -6.4739 16 14 5.6084 3.7919 -7.6323 17 1 6.4526 2.5884 -7.4221 18 1 4.9689 3.7203 -8.9707 19 1 6.4542 5.0099 -7.5522 20 6 3.4074 2.8593 -3.8077 21 6 4.0127 2.2701 -2.5237 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6885 1.8463 0.8901 26 1 1.6886 1.8464 -0.8899 27 1 5.0855 0.5309 1.3448 28 1 3.6057 1.1041 2.1509 29 1 3.6257 -0.4876 1.3544 30 1 5.2435 2.4942 -0.0935 31 1 3.8155 3.2033 0.6979 32 1 5.4806 4.3246 -1.7416 33 1 4.2430 5.1117 -0.7325 34 1 4.3896 6.0634 -3.0687 35 1 2.7805 5.4077 -2.6750 36 1 3.0176 2.6751 -7.2763 37 1 2.3211 2.8914 -3.7228 38 1 3.6926 2.2469 -4.6631 39 1 5.0885 2.1470 -2.6486 40 1 3.5570 1.3012 -2.3193 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187144047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:48 Heat of formation + Delta-G solvation = -16.989380 kcal Electronic energy + Delta-G solvation = -18565.664626 eV Core-core repulsion = 15802.395174 eV Total energy + Delta-G solvation = -2763.269451 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.82790 -37.49690 -35.23793 -33.13073 -30.98757 -29.90100 -27.38775 -27.13827 -25.39534 -24.21098 -22.76848 -22.27355 -19.83080 -18.96050 -16.79305 -16.41055 -15.87798 -15.25833 -15.05147 -14.47498 -14.22704 -13.90360 -13.59954 -13.41203 -13.08929 -12.88877 -12.57396 -12.27675 -11.79259 -11.63027 -11.39529 -11.23200 -10.91330 -10.87195 -10.69785 -10.52384 -10.33202 -10.27213 -9.98595 -9.66431 -9.50128 -9.48167 -8.40527 -7.77713 -6.80620 -5.81724 -3.04310 3.41068 3.50029 3.50754 3.89480 4.38823 4.55047 4.98410 5.09847 5.26166 5.30677 5.36184 5.43543 5.47824 5.62110 5.67259 5.69312 5.78310 5.80689 5.93038 5.96262 5.98825 6.13189 6.16085 6.22635 6.30169 6.34714 6.42364 6.57155 6.69155 6.91082 7.25425 7.31509 7.59430 7.63824 7.72155 7.85631 8.36880 9.19225 9.87727 10.42709 11.27829 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.005992 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.172319 B = 4672.141146 C = 5065.538960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.071 3.929 4 C -0.092 4.092 5 H 0.083 0.917 6 C -0.140 4.140 7 C 0.060 3.940 8 N -0.534 5.534 9 C 0.045 3.955 10 C 0.150 3.850 11 N -0.596 5.596 12 C -0.254 4.254 13 H 0.071 0.929 14 C 0.001 3.999 15 N -0.891 5.891 16 Si 0.887 3.113 17 H -0.289 1.289 18 H -0.293 1.293 19 H -0.279 1.279 20 C 0.172 3.828 21 C 0.030 3.970 22 H 0.036 0.964 23 H 0.043 0.957 24 H 0.080 0.920 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.028 0.972 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.024 0.976 36 H 0.253 0.747 37 H 0.023 0.977 38 H 0.091 0.909 39 H 0.025 0.975 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.295 -4.033 14.312 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.005 4.005 4 C -0.111 4.111 5 H 0.101 0.899 6 C -0.198 4.198 7 C -0.068 4.068 8 N -0.259 5.259 9 C -0.085 4.085 10 C 0.023 3.977 11 N -0.319 5.319 12 C -0.383 4.383 13 H 0.089 0.911 14 C -0.198 4.198 15 N -0.535 5.535 16 Si 0.717 3.283 17 H -0.216 1.216 18 H -0.220 1.220 19 H -0.205 1.205 20 C 0.046 3.954 21 C -0.099 4.099 22 H 0.054 0.946 23 H 0.061 0.939 24 H 0.099 0.901 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.042 0.958 36 H 0.063 0.937 37 H 0.041 0.959 38 H 0.109 0.891 39 H 0.043 0.957 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.738 -4.172 14.170 14.873 hybrid contribution 1.300 0.016 -0.710 1.481 sum -0.438 -4.156 13.460 14.094 Atomic orbital electron populations 1.22672 0.81483 1.02174 0.99952 1.87813 1.19326 1.28914 1.95493 1.22561 0.93077 0.83803 1.01043 1.21239 0.93960 0.96711 0.99190 0.89858 1.21745 1.00497 1.01060 0.96523 1.22112 0.97138 0.94216 0.93333 1.62041 1.58288 1.04067 1.01514 1.22592 0.96059 0.90575 0.99233 1.20937 0.97595 0.92377 0.86801 1.44293 1.70216 1.07580 1.09858 1.19220 1.22919 1.10322 0.85789 0.91109 1.24700 0.96624 1.01752 0.96701 1.70223 1.20945 1.34822 1.27535 0.86482 0.82716 0.78000 0.81121 1.21625 1.21994 1.20459 1.21032 0.95159 0.86042 0.93136 1.23051 0.98547 0.95452 0.92865 0.94562 0.93871 0.90126 0.94012 0.91275 0.93008 0.93053 0.92012 0.94998 0.91290 0.95349 0.92087 0.92646 0.95771 0.93673 0.95874 0.89092 0.95673 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.40 -5.67 10.33 -35.23 -0.36 -6.04 16 3 C 0.07 1.00 5.15 37.16 0.19 1.19 16 4 C -0.09 -1.26 2.13 -90.62 -0.19 -1.45 16 5 H 0.08 1.26 6.04 -51.93 -0.31 0.95 16 6 C -0.14 -1.61 9.04 37.16 0.34 -1.27 16 7 C 0.06 0.87 4.55 -3.82 -0.02 0.85 16 8 N -0.53 -9.46 3.98 -234.01 -0.93 -10.39 16 9 C 0.04 0.81 5.61 -3.70 -0.02 0.79 16 10 C 0.15 3.19 6.69 -3.60 -0.02 3.17 16 11 N -0.60 -15.24 3.06 -171.74 -0.53 -15.77 16 12 C -0.25 -7.08 9.63 -15.06 -0.15 -7.22 16 13 H 0.07 1.94 7.93 -52.49 -0.42 1.52 16 14 C 0.00 0.02 4.66 -17.43 -0.08 -0.06 16 15 N -0.89 -26.15 11.39 55.49 0.63 -25.52 16 16 Si 0.89 21.82 29.65 -169.99 -5.04 16.78 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.17 4.21 5.68 -3.37 -0.02 4.19 16 21 C 0.03 0.59 5.14 -3.46 -0.02 0.57 16 22 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 1.11 7.42 -51.93 -0.39 0.73 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.72 7.96 -51.93 -0.41 0.31 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.94 8.11 -51.93 -0.42 0.52 16 34 H 0.06 1.13 7.91 -51.93 -0.41 0.72 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.02 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.09 2.47 5.79 -51.93 -0.30 2.17 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 1.26 5.64 -51.93 -0.29 0.97 16 LS Contribution 311.82 15.07 4.70 4.70 Total: -1.00 -29.93 311.82 -7.57 -37.50 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -7.16 Total: -3.51 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 1.12 Total: 2.25 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.82 Total: -51.68 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.36 Total: -6.04 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.04 Total: 16.78 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.93 -7.57 -37.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187144047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.509 kcal (2) G-P(sol) polarization free energy of solvation -29.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds