Wall clock time and date at job start Mon Mar 30 2020 05:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99703 * 2 1 4 4 C 1.53005 * 109.47044 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47014 * 55.00702 * 4 3 2 6 6 C 1.52999 * 109.47419 * 295.00247 * 4 3 2 7 7 C 1.53002 * 109.46996 * 175.00387 * 4 3 2 8 8 N 1.46902 * 109.47146 * 298.13217 * 7 4 3 9 9 C 1.46897 * 111.00252 * 184.28168 * 8 7 4 10 10 C 1.53236 * 109.34087 * 187.25488 * 9 8 7 11 11 N 1.47078 * 108.52172 * 306.16778 * 10 9 8 12 12 C 1.36937 * 120.88166 * 231.19112 * 11 10 9 13 13 H 1.07996 * 120.00164 * 16.50688 * 12 11 10 14 14 C 1.38816 * 119.99828 * 196.23890 * 12 11 10 15 15 N 1.31615 * 119.99856 * 31.34568 * 14 12 11 16 16 Si 1.86793 * 119.99694 * 211.34733 * 14 12 11 17 17 H 1.48503 * 109.47141 * 94.99582 * 16 14 12 18 18 H 1.48504 * 109.47217 * 214.99461 * 16 14 12 19 19 H 1.48506 * 109.47339 * 334.99751 * 16 14 12 20 20 C 1.47077 * 118.23807 * 51.45711 * 11 10 9 21 21 C 1.46905 * 111.00043 * 308.58382 * 8 7 4 22 22 H 1.08999 * 109.47241 * 299.99334 * 1 2 3 23 23 H 1.09004 * 109.47282 * 60.00104 * 1 2 3 24 24 H 1.09003 * 109.46813 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46998 * 60.00394 * 3 2 1 26 26 H 1.08997 * 109.47628 * 299.99807 * 3 2 1 27 27 H 1.08992 * 109.47276 * 184.98667 * 6 4 3 28 28 H 1.09000 * 109.46849 * 304.99464 * 6 4 3 29 29 H 1.09006 * 109.46753 * 64.98407 * 6 4 3 30 30 H 1.09001 * 109.47092 * 178.13778 * 7 4 3 31 31 H 1.08999 * 109.47412 * 58.13643 * 7 4 3 32 32 H 1.09007 * 109.49419 * 67.29346 * 9 8 7 33 33 H 1.09004 * 109.51479 * 307.22850 * 9 8 7 34 34 H 1.09006 * 109.62508 * 186.46121 * 10 9 8 35 35 H 1.08994 * 109.79013 * 65.97414 * 10 9 8 36 36 H 0.97006 * 119.99828 * 180.02562 * 15 14 12 37 37 H 1.09007 * 109.62582 * 68.25246 * 20 11 10 38 38 H 1.08994 * 109.63359 * 188.82927 * 20 11 10 39 39 H 1.09003 * 109.48948 * 292.70584 * 21 8 7 40 40 H 1.09001 * 109.49377 * 52.75940 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8507 0.5687 -0.8428 6 6 3.9963 0.5365 1.3063 7 6 4.1572 2.5771 -0.1263 8 7 3.7506 3.1816 -1.4019 9 6 4.4103 4.4785 -1.6038 10 6 3.8268 5.1564 -2.8481 11 7 3.9300 4.2233 -3.9803 12 6 4.4926 4.6156 -5.1654 13 1 5.0999 5.5078 -5.2057 14 6 4.2870 3.8635 -6.3139 15 7 3.1611 3.2010 -6.4739 16 14 5.6084 3.7919 -7.6323 17 1 6.4526 2.5884 -7.4221 18 1 4.9689 3.7203 -8.9707 19 1 6.4542 5.0099 -7.5522 20 6 3.4074 2.8593 -3.8077 21 6 4.0127 2.2701 -2.5237 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6885 1.8463 0.8901 26 1 1.6886 1.8464 -0.8899 27 1 5.0855 0.5309 1.3448 28 1 3.6057 1.1041 2.1509 29 1 3.6257 -0.4876 1.3544 30 1 5.2435 2.4942 -0.0935 31 1 3.8155 3.2033 0.6979 32 1 5.4806 4.3246 -1.7416 33 1 4.2430 5.1117 -0.7325 34 1 4.3896 6.0634 -3.0687 35 1 2.7805 5.4077 -2.6750 36 1 3.0176 2.6751 -7.2763 37 1 2.3211 2.8914 -3.7228 38 1 3.6926 2.2469 -4.6631 39 1 5.0885 2.1470 -2.6486 40 1 3.5570 1.3012 -2.3193 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187144047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:47 Heat of formation + Delta-G solvation = -36.656281 kcal Electronic energy + Delta-G solvation = -18566.517446 eV Core-core repulsion = 15802.395174 eV Total energy + Delta-G solvation = -2764.122272 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.18992 -38.75996 -36.77494 -34.67517 -32.81460 -31.63693 -28.88817 -28.21312 -26.58396 -25.73826 -24.41056 -23.92759 -21.17748 -20.52987 -18.73793 -17.50956 -17.13177 -16.75318 -16.41278 -16.03418 -15.64100 -15.38380 -15.29793 -15.08519 -14.68162 -14.27312 -13.70115 -13.48443 -13.20663 -13.11844 -12.89131 -12.60916 -12.59152 -12.30878 -12.11717 -12.06095 -11.93489 -11.77483 -11.64441 -11.47108 -11.12446 -10.53328 -10.50532 -9.25730 -8.82877 -7.94256 -5.19781 1.44642 1.48219 1.56757 2.50961 2.88609 3.01755 3.17865 3.65866 3.94389 3.97448 4.20463 4.30937 4.35137 4.47230 4.52194 4.54711 4.58915 4.63560 4.65931 4.72602 4.76195 4.81936 4.86101 4.92679 4.93446 5.04483 5.12805 5.19741 5.30550 5.37739 5.41710 5.58164 5.64856 6.16636 6.27334 6.30642 6.31716 7.08299 7.83677 8.35124 9.13993 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.005992 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.172319 B = 4672.141146 C = 5065.538960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.414 6.414 3 C 0.076 3.924 4 C -0.091 4.091 5 H 0.063 0.937 6 C -0.132 4.132 7 C 0.065 3.935 8 N -0.541 5.541 9 C 0.055 3.945 10 C 0.143 3.857 11 N -0.614 5.614 12 C -0.266 4.266 13 H 0.073 0.927 14 C -0.050 4.050 15 N -0.926 5.926 16 Si 0.954 3.046 17 H -0.289 1.289 18 H -0.296 1.296 19 H -0.268 1.268 20 C 0.180 3.820 21 C 0.051 3.949 22 H 0.053 0.947 23 H 0.034 0.966 24 H 0.098 0.902 25 H 0.058 0.942 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.093 0.907 32 H 0.024 0.976 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.017 0.983 36 H 0.251 0.749 37 H -0.004 1.004 38 H 0.058 0.942 39 H 0.016 0.984 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 -3.870 16.360 16.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.334 6.334 3 C -0.001 4.001 4 C -0.110 4.110 5 H 0.081 0.919 6 C -0.190 4.190 7 C -0.063 4.063 8 N -0.266 5.266 9 C -0.074 4.074 10 C 0.018 3.982 11 N -0.338 5.338 12 C -0.395 4.395 13 H 0.090 0.910 14 C -0.246 4.246 15 N -0.572 5.572 16 Si 0.783 3.217 17 H -0.216 1.216 18 H -0.223 1.223 19 H -0.192 1.192 20 C 0.053 3.947 21 C -0.078 4.078 22 H 0.071 0.929 23 H 0.053 0.947 24 H 0.116 0.884 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.111 0.889 32 H 0.042 0.958 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.060 0.940 37 H 0.014 0.986 38 H 0.076 0.924 39 H 0.034 0.966 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.810 -3.994 16.253 16.756 hybrid contribution 0.926 0.001 -1.305 1.600 sum 0.116 -3.993 14.948 15.473 Atomic orbital electron populations 1.22856 0.80062 1.03540 1.00370 1.87786 1.20976 1.29040 1.95563 1.22487 0.93377 0.83745 1.00462 1.21214 0.93719 0.96191 0.99845 0.91854 1.21670 1.01144 1.00734 0.95463 1.22183 0.97656 0.94705 0.91722 1.61981 1.58708 1.03781 1.02098 1.22459 0.95286 0.90928 0.98720 1.21133 0.97578 0.92437 0.87070 1.44584 1.70255 1.08635 1.10350 1.19553 1.22740 1.10430 0.86811 0.90967 1.25447 0.98145 1.01986 0.99011 1.70341 1.22597 1.36039 1.28224 0.85436 0.79949 0.78135 0.78221 1.21619 1.22302 1.19216 1.20799 0.93721 0.85786 0.94350 1.22660 0.97377 0.96049 0.91761 0.92878 0.94682 0.88399 0.92369 0.93987 0.92005 0.91574 0.92423 0.94286 0.88921 0.95796 0.88386 0.92012 0.96474 0.94036 0.98553 0.92359 0.96565 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.41 -11.35 10.33 -148.98 -1.54 -12.89 16 3 C 0.08 2.01 5.15 71.98 0.37 2.38 16 4 C -0.09 -2.29 2.13 -10.79 -0.02 -2.32 16 5 H 0.06 1.85 6.04 -2.39 -0.01 1.84 16 6 C -0.13 -2.63 9.04 71.98 0.65 -1.98 16 7 C 0.06 1.66 4.55 86.30 0.39 2.06 16 8 N -0.54 -18.28 3.98 -894.29 -3.56 -21.84 16 9 C 0.06 1.86 5.61 86.38 0.48 2.35 16 10 C 0.14 6.03 6.69 86.35 0.58 6.61 16 11 N -0.61 -31.87 3.06 -697.26 -2.13 -34.00 16 12 C -0.27 -15.00 9.63 84.03 0.81 -14.19 16 13 H 0.07 3.96 7.93 -2.91 -0.02 3.94 16 14 C -0.05 -2.87 4.66 84.86 0.40 -2.47 16 15 N -0.93 -56.08 11.39 21.65 0.25 -55.83 16 16 Si 0.95 45.56 29.65 68.60 2.03 47.59 16 17 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 18 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 C 0.18 9.07 5.68 86.50 0.49 9.56 16 21 C 0.05 2.02 5.14 86.54 0.44 2.47 16 22 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.03 0.78 8.14 -2.38 -0.02 0.77 16 24 H 0.10 1.69 8.14 -2.39 -0.02 1.68 16 25 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.04 1.34 7.42 -2.39 -0.02 1.32 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.21 7.96 -2.38 -0.02 1.19 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.10 2.62 8.11 -2.38 -0.02 2.60 16 34 H 0.06 2.47 7.91 -2.38 -0.02 2.45 16 35 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 37 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 38 H 0.06 3.31 5.79 -2.39 -0.01 3.30 16 39 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.08 2.97 5.64 -2.39 -0.01 2.96 16 Total: -1.00 -65.19 311.82 1.87 -63.31 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: 0.98 Total: 7.35 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 5.84 Total: 6.30 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -5.44 Total: -111.67 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -1.54 Total: -12.89 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -65.19 1.87 -63.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187144047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.657 kcal (2) G-P(sol) polarization free energy of solvation -65.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds