Wall clock time and date at job start Mon Mar 30 2020 04:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.49571 * 2 1 4 4 C 1.53056 * 109.49216 * 239.95463 * 2 1 3 5 5 N 1.46951 * 109.36585 * 181.63528 * 4 2 1 6 6 C 1.46897 * 111.00156 * 183.18864 * 5 4 2 7 7 C 1.52997 * 109.47692 * 169.99715 * 6 5 4 8 8 C 1.50696 * 109.47471 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99718 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99895 * 180.27605 * 8 7 6 11 11 N 1.31513 * 120.00133 * 359.72680 * 10 8 7 12 12 Si 1.86800 * 119.99719 * 179.72787 * 10 8 7 13 13 H 1.48499 * 109.47247 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47026 * 119.99911 * 12 10 8 15 15 H 1.48499 * 109.46814 * 239.99768 * 12 10 8 16 16 C 1.46953 * 110.88213 * 59.31956 * 5 4 2 17 17 C 1.53054 * 109.36588 * 300.67671 * 16 5 4 18 18 N 1.46953 * 109.48673 * 120.06402 * 2 1 3 19 19 C 1.46895 * 111.00507 * 303.15472 * 18 2 1 20 20 C 1.53008 * 109.47171 * 284.66635 * 19 18 2 21 21 O 1.42894 * 109.47206 * 66.36588 * 20 19 18 22 22 H 1.08999 * 109.47009 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47040 * 300.04606 * 1 2 3 24 24 H 1.09004 * 109.46576 * 60.04124 * 1 2 3 25 25 H 1.08997 * 109.48486 * 61.66646 * 4 2 1 26 26 H 1.08995 * 109.48282 * 301.60218 * 4 2 1 27 27 H 1.09002 * 109.46939 * 49.99616 * 6 5 4 28 28 H 1.09002 * 109.46829 * 289.99949 * 6 5 4 29 29 H 1.09002 * 109.47009 * 59.99944 * 7 6 5 30 30 H 1.09002 * 109.46719 * 300.00298 * 7 6 5 31 31 H 0.96995 * 119.99987 * 180.02562 * 11 10 8 32 32 H 1.09003 * 109.49217 * 60.64726 * 16 5 4 33 33 H 1.09007 * 109.48902 * 180.71544 * 16 5 4 34 34 H 1.08995 * 109.49058 * 298.43754 * 17 16 5 35 35 H 1.08995 * 109.50586 * 178.37866 * 17 16 5 36 36 H 1.09009 * 109.46912 * 44.65817 * 19 18 2 37 37 H 1.08997 * 109.47844 * 164.66131 * 19 18 2 38 38 H 1.08997 * 109.46988 * 186.36674 * 20 19 18 39 39 H 1.08997 * 109.46720 * 306.36688 * 20 19 18 40 40 H 0.96705 * 113.99960 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0407 -0.7224 -1.2490 5 7 3.5097 -0.7551 -1.2265 6 6 4.0412 -1.3748 -2.4477 7 6 5.5562 -1.1693 -2.5062 8 6 6.1015 -1.8056 -3.7587 9 1 5.4341 -2.3061 -4.4447 10 6 7.4531 -1.7532 -4.0263 11 7 8.2656 -1.1434 -3.1913 12 14 8.1300 -2.5485 -5.5751 13 1 7.0175 -3.1643 -6.3422 14 1 8.7954 -1.5171 -6.4109 15 1 9.1150 -3.5959 -5.2037 16 6 3.9999 -1.4491 -0.0275 17 6 3.4893 -0.7267 1.2214 18 7 2.0202 -0.6940 1.1990 19 6 1.4888 -0.0744 2.4203 20 6 2.2245 1.2405 2.6867 21 8 1.9135 2.1781 1.6542 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5146 0.8896 24 1 -0.3632 0.5132 -0.8904 25 1 1.7023 -0.1926 -2.1393 26 1 1.6544 -1.7415 -1.2630 27 1 3.5781 -0.9139 -3.3202 28 1 3.8193 -2.4420 -2.4398 29 1 6.0193 -1.6303 -1.6338 30 1 5.7780 -0.1021 -2.5141 31 1 9.2164 -1.1062 -3.3797 32 1 3.6359 -2.4766 -0.0277 33 1 5.0900 -1.4491 -0.0275 34 1 3.8755 0.2924 1.2355 35 1 3.8277 -1.2562 2.1120 36 1 0.4245 0.1241 2.2935 37 1 1.6346 -0.7496 3.2634 38 1 1.9112 1.6434 3.6498 39 1 3.2992 1.0590 2.7010 40 1 2.3467 3.0363 1.7587 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187716079.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:41 Heat of formation + Delta-G solvation = -40.047196 kcal Electronic energy + Delta-G solvation = -18446.312662 eV Core-core repulsion = 15682.043348 eV Total energy + Delta-G solvation = -2764.269313 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.60367 -37.01576 -35.18377 -32.96186 -32.30078 -30.39388 -28.62959 -26.88770 -25.47954 -23.68540 -22.27682 -21.71840 -19.78514 -19.01576 -17.61246 -16.53653 -16.00685 -15.40534 -14.86077 -14.67991 -14.43461 -13.97660 -13.90924 -13.62370 -12.97981 -12.52312 -12.32554 -12.17765 -11.96827 -11.74198 -11.46149 -11.31310 -11.06321 -10.92087 -10.83279 -10.60291 -10.44166 -10.28160 -9.86094 -9.76935 -9.25568 -9.06035 -8.30058 -8.06309 -7.59404 -5.96724 -3.98577 3.33273 3.40527 3.44952 3.94982 4.25414 4.43114 4.61844 4.91090 5.09128 5.14772 5.25954 5.33609 5.36404 5.39477 5.67778 5.70526 5.73267 5.80709 5.86389 5.88999 5.98443 6.09450 6.25205 6.29018 6.37507 6.50237 6.55249 6.64576 7.03408 7.21133 7.29265 7.49498 7.60848 7.66794 7.86844 7.95557 8.13260 8.48132 9.09006 9.64910 11.14837 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.042406 B = 0.004822 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.132134 B = 5804.867285 C = 6076.222956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.078 3.922 3 H 0.079 0.921 4 C 0.061 3.939 5 N -0.539 5.539 6 C 0.064 3.936 7 C 0.028 3.972 8 C -0.520 4.520 9 H 0.054 0.946 10 C 0.058 3.942 11 N -0.894 5.894 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.058 3.942 17 C 0.055 3.945 18 N -0.531 5.531 19 C 0.047 3.953 20 C 0.035 3.965 21 O -0.562 6.562 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.030 0.970 27 H 0.059 0.941 28 H 0.019 0.981 29 H 0.016 0.984 30 H 0.023 0.977 31 H 0.259 0.741 32 H 0.032 0.968 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.053 0.947 40 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.483 4.057 12.009 18.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.030 4.030 3 H 0.097 0.903 4 C -0.068 4.068 5 N -0.264 5.264 6 C -0.063 4.063 7 C -0.009 4.009 8 C -0.559 4.559 9 H 0.072 0.928 10 C -0.143 4.143 11 N -0.534 5.534 12 Si 0.719 3.281 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.070 4.070 17 C -0.073 4.073 18 N -0.256 5.256 19 C -0.081 4.081 20 C -0.045 4.045 21 O -0.368 6.368 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.106 0.894 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -13.660 3.576 11.796 18.399 hybrid contribution 0.883 0.002 -0.531 1.030 sum -12.777 3.578 11.265 17.406 Atomic orbital electron populations 1.21835 0.95088 1.01512 1.01437 1.21838 0.94281 0.97949 0.88919 0.90298 1.22181 0.88936 0.98651 0.97027 1.62222 1.06630 1.54347 1.03155 1.22311 0.99586 0.95047 0.89365 1.19091 0.87509 0.97689 0.96614 1.21253 0.92601 1.35275 1.06731 0.92757 1.24989 0.97128 0.95500 0.96700 1.69982 1.03656 1.43385 1.36354 0.86548 0.78982 0.79128 0.83408 1.19766 1.21014 1.21059 1.22144 1.00816 0.95050 0.89040 1.22233 0.87006 0.99893 0.98134 1.62376 1.08774 1.52617 1.01801 1.22419 1.00331 0.91617 0.93731 1.23029 0.99899 0.91333 0.90200 1.86588 1.74010 1.26608 1.49585 0.92696 0.92448 0.92484 0.91056 0.95182 0.92211 0.96283 0.96548 0.95817 0.93109 0.94929 0.89370 0.93527 0.91099 0.89665 0.89720 0.93975 0.92918 0.77995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.92 37.16 0.33 -1.38 16 2 C 0.08 1.14 2.15 -67.66 -0.15 1.00 16 3 H 0.08 1.28 5.63 -51.93 -0.29 0.98 16 4 C 0.06 1.02 4.89 -3.77 -0.02 1.00 16 5 N -0.54 -10.53 4.71 -234.47 -1.10 -11.63 16 6 C 0.06 1.42 4.90 -3.83 -0.02 1.40 16 7 C 0.03 0.76 4.91 -27.89 -0.14 0.62 16 8 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 9 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 12 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 C 0.06 1.05 5.41 -3.77 -0.02 1.03 16 17 C 0.06 0.82 4.76 -3.76 -0.02 0.80 16 18 N -0.53 -7.40 4.73 -226.49 -1.07 -8.47 16 19 C 0.05 0.52 5.85 -3.82 -0.02 0.50 16 20 C 0.03 0.35 6.63 37.16 0.25 0.59 16 21 O -0.56 -6.23 10.82 -35.23 -0.38 -6.61 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.65 6.05 -51.93 -0.31 0.34 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 1.31 8.03 -51.93 -0.42 0.90 16 28 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 29 H 0.02 0.46 6.49 -51.93 -0.34 0.12 16 30 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 1.74 6.34 -51.92 -0.33 1.41 16 34 H 0.05 0.73 6.27 -51.93 -0.33 0.40 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 0.91 5.52 -51.92 -0.29 0.62 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.05 0.56 5.98 -51.93 -0.31 0.25 16 40 H 0.37 2.75 9.12 45.56 0.42 3.17 16 LS Contribution 304.20 15.07 4.58 4.58 Total: -1.00 -31.73 304.20 -8.43 -40.17 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.96 Total: -0.27 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -0.21 Total: -8.19 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -1.44 Total: -46.59 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.38 Total: -6.61 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.73 -8.43 -40.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187716079.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.119 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds