Wall clock time and date at job start Mon Mar 30 2020 04:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.49571 * 2 1 4 4 C 1.53056 * 109.49216 * 239.95463 * 2 1 3 5 5 N 1.46951 * 109.36585 * 181.63528 * 4 2 1 6 6 C 1.46897 * 111.00156 * 183.18864 * 5 4 2 7 7 C 1.52997 * 109.47692 * 169.99715 * 6 5 4 8 8 C 1.50696 * 109.47471 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99718 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99895 * 180.27605 * 8 7 6 11 11 N 1.31513 * 120.00133 * 359.72680 * 10 8 7 12 12 Si 1.86800 * 119.99719 * 179.72787 * 10 8 7 13 13 H 1.48499 * 109.47247 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47026 * 119.99911 * 12 10 8 15 15 H 1.48499 * 109.46814 * 239.99768 * 12 10 8 16 16 C 1.46953 * 110.88213 * 59.31956 * 5 4 2 17 17 C 1.53054 * 109.36588 * 300.67671 * 16 5 4 18 18 N 1.46953 * 109.48673 * 120.06402 * 2 1 3 19 19 C 1.46895 * 111.00507 * 303.15472 * 18 2 1 20 20 C 1.53008 * 109.47171 * 284.66635 * 19 18 2 21 21 O 1.42894 * 109.47206 * 66.36588 * 20 19 18 22 22 H 1.08999 * 109.47009 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47040 * 300.04606 * 1 2 3 24 24 H 1.09004 * 109.46576 * 60.04124 * 1 2 3 25 25 H 1.08997 * 109.48486 * 61.66646 * 4 2 1 26 26 H 1.08995 * 109.48282 * 301.60218 * 4 2 1 27 27 H 1.09002 * 109.46939 * 49.99616 * 6 5 4 28 28 H 1.09002 * 109.46829 * 289.99949 * 6 5 4 29 29 H 1.09002 * 109.47009 * 59.99944 * 7 6 5 30 30 H 1.09002 * 109.46719 * 300.00298 * 7 6 5 31 31 H 0.96995 * 119.99987 * 180.02562 * 11 10 8 32 32 H 1.09003 * 109.49217 * 60.64726 * 16 5 4 33 33 H 1.09007 * 109.48902 * 180.71544 * 16 5 4 34 34 H 1.08995 * 109.49058 * 298.43754 * 17 16 5 35 35 H 1.08995 * 109.50586 * 178.37866 * 17 16 5 36 36 H 1.09009 * 109.46912 * 44.65817 * 19 18 2 37 37 H 1.08997 * 109.47844 * 164.66131 * 19 18 2 38 38 H 1.08997 * 109.46988 * 186.36674 * 20 19 18 39 39 H 1.08997 * 109.46720 * 306.36688 * 20 19 18 40 40 H 0.96705 * 113.99960 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0407 -0.7224 -1.2490 5 7 3.5097 -0.7551 -1.2265 6 6 4.0412 -1.3748 -2.4477 7 6 5.5562 -1.1693 -2.5062 8 6 6.1015 -1.8056 -3.7587 9 1 5.4341 -2.3061 -4.4447 10 6 7.4531 -1.7532 -4.0263 11 7 8.2656 -1.1434 -3.1913 12 14 8.1300 -2.5485 -5.5751 13 1 7.0175 -3.1643 -6.3422 14 1 8.7954 -1.5171 -6.4109 15 1 9.1150 -3.5959 -5.2037 16 6 3.9999 -1.4491 -0.0275 17 6 3.4893 -0.7267 1.2214 18 7 2.0202 -0.6940 1.1990 19 6 1.4888 -0.0744 2.4203 20 6 2.2245 1.2405 2.6867 21 8 1.9135 2.1781 1.6542 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5146 0.8896 24 1 -0.3632 0.5132 -0.8904 25 1 1.7023 -0.1926 -2.1393 26 1 1.6544 -1.7415 -1.2630 27 1 3.5781 -0.9139 -3.3202 28 1 3.8193 -2.4420 -2.4398 29 1 6.0193 -1.6303 -1.6338 30 1 5.7780 -0.1021 -2.5141 31 1 9.2164 -1.1062 -3.3797 32 1 3.6359 -2.4766 -0.0277 33 1 5.0900 -1.4491 -0.0275 34 1 3.8755 0.2924 1.2355 35 1 3.8277 -1.2562 2.1120 36 1 0.4245 0.1241 2.2935 37 1 1.6346 -0.7496 3.2634 38 1 1.9112 1.6434 3.6498 39 1 3.2992 1.0590 2.7010 40 1 2.3467 3.0363 1.7587 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187716079.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:41 Heat of formation + Delta-G solvation = -65.395104 kcal Electronic energy + Delta-G solvation = -18447.411829 eV Core-core repulsion = 15682.043348 eV Total energy + Delta-G solvation = -2765.368481 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.78916 -38.17792 -36.44642 -34.99964 -33.48520 -32.07702 -30.06391 -28.00974 -27.11448 -25.27752 -23.71229 -22.89493 -21.54069 -20.20085 -18.63094 -18.40805 -17.23601 -16.61394 -16.51081 -16.16441 -15.93140 -15.43157 -15.13350 -14.89299 -14.29363 -14.11109 -13.91965 -13.45240 -13.22824 -12.96143 -12.86886 -12.78472 -12.67049 -12.44393 -12.34509 -11.97825 -11.85561 -11.76672 -11.58494 -11.24709 -11.08434 -10.70814 -10.54438 -9.26530 -9.06753 -8.20659 -6.32042 1.39994 1.40535 1.54072 2.40129 2.94082 3.06356 3.12748 3.48083 3.88163 4.07246 4.09438 4.24064 4.33015 4.34195 4.45212 4.52750 4.54008 4.59905 4.66329 4.79609 4.81477 4.82714 4.90104 4.96130 5.04050 5.05995 5.14175 5.31092 5.42397 5.47883 5.64790 5.76960 6.05755 6.11354 6.22873 6.33765 6.35599 6.84673 6.86715 7.37076 8.91894 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.042406 B = 0.004822 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.132134 B = 5804.867285 C = 6076.222956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.083 3.917 3 H 0.065 0.935 4 C 0.060 3.940 5 N -0.550 5.550 6 C 0.080 3.920 7 C 0.039 3.961 8 C -0.545 4.545 9 H 0.059 0.941 10 C 0.002 3.998 11 N -0.932 5.932 12 Si 0.968 3.032 13 H -0.262 1.262 14 H -0.277 1.277 15 H -0.277 1.277 16 C 0.059 3.941 17 C 0.066 3.934 18 N -0.538 5.538 19 C 0.045 3.955 20 C 0.036 3.964 21 O -0.582 6.582 22 H 0.056 0.944 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.028 0.972 27 H 0.062 0.938 28 H 0.017 0.983 29 H -0.005 1.005 30 H -0.009 1.009 31 H 0.264 0.736 32 H 0.028 0.972 33 H 0.061 0.939 34 H 0.038 0.962 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.727 3.824 12.300 19.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.025 4.025 3 H 0.083 0.917 4 C -0.068 4.068 5 N -0.274 5.274 6 C -0.048 4.048 7 C 0.002 3.998 8 C -0.583 4.583 9 H 0.077 0.923 10 C -0.195 4.195 11 N -0.572 5.572 12 Si 0.792 3.208 13 H -0.186 1.186 14 H -0.202 1.202 15 H -0.202 1.202 16 C -0.070 4.070 17 C -0.062 4.062 18 N -0.262 5.262 19 C -0.083 4.083 20 C -0.043 4.043 21 O -0.390 6.390 22 H 0.075 0.925 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.035 0.965 29 H 0.013 0.987 30 H 0.009 0.991 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -14.925 3.357 12.106 19.508 hybrid contribution 1.266 0.115 -0.565 1.391 sum -13.659 3.472 11.541 18.216 Atomic orbital electron populations 1.21764 0.92890 1.01927 1.02419 1.21767 0.95874 0.96677 0.88218 0.91689 1.22280 0.86763 0.98952 0.98771 1.62163 1.08700 1.54162 1.02418 1.21964 0.96638 0.95089 0.91085 1.18895 0.90578 0.95056 0.95302 1.21649 0.93357 1.35771 1.07557 0.92304 1.25959 0.97402 0.95848 1.00334 1.70114 1.04177 1.44438 1.38462 0.85365 0.78388 0.78216 0.78858 1.18635 1.20236 1.20233 1.22113 0.99353 0.95339 0.90161 1.22097 0.88020 0.99138 0.96945 1.62373 1.07746 1.53267 1.02832 1.22561 1.00567 0.92400 0.92746 1.23009 0.99245 0.90970 0.91059 1.86531 1.74436 1.27705 1.50339 0.92489 0.91252 0.91775 0.90717 0.95380 0.91980 0.96524 0.98703 0.99057 0.92713 0.95346 0.92017 0.94336 0.88972 0.88996 0.87858 0.91483 0.93761 0.76342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.92 71.98 0.64 -2.27 16 2 C 0.08 2.31 2.15 44.92 0.10 2.41 16 3 H 0.07 2.04 5.63 -2.39 -0.01 2.02 16 4 C 0.06 2.00 4.89 86.31 0.42 2.42 16 5 N -0.55 -21.88 4.71 -895.72 -4.22 -26.10 16 6 C 0.08 3.64 4.90 86.30 0.42 4.06 16 7 C 0.04 2.18 4.91 29.85 0.15 2.33 16 8 C -0.54 -32.09 9.11 25.60 0.23 -31.85 16 9 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 10 C 0.00 0.15 5.46 84.66 0.46 0.61 16 11 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 12 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 13 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 14 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 15 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 16 C 0.06 2.18 5.41 86.31 0.47 2.64 16 17 C 0.07 1.92 4.76 86.31 0.41 2.34 16 18 N -0.54 -14.07 4.73 -870.47 -4.12 -18.19 16 19 C 0.04 0.86 5.85 86.31 0.51 1.37 16 20 C 0.04 0.64 6.63 71.98 0.48 1.12 16 21 O -0.58 -11.90 10.82 -148.98 -1.61 -13.51 16 22 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.07 1.37 6.05 -2.39 -0.01 1.36 16 24 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.07 2.38 8.07 -2.39 -0.02 2.36 16 26 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 2.77 8.03 -2.39 -0.02 2.75 16 28 H 0.02 0.76 8.12 -2.39 -0.02 0.74 16 29 H -0.01 -0.31 6.49 -2.39 -0.02 -0.33 16 30 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 31 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 32 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 2.58 6.34 -2.38 -0.02 2.56 16 34 H 0.04 1.19 6.27 -2.39 -0.01 1.18 16 35 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.09 1.67 5.52 -2.38 -0.01 1.66 16 37 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.04 0.86 5.98 -2.39 -0.01 0.85 16 40 H 0.39 5.18 9.12 -74.05 -0.68 4.50 16 Total: -1.00 -68.57 304.20 -3.02 -71.58 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.34 Total: 11.52 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 4.28 Total: -14.84 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -8.05 Total: -101.83 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -1.61 Total: -13.51 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -68.57 -3.02 -71.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187716079.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.189 kcal (2) G-P(sol) polarization free energy of solvation -68.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds