Wall clock time and date at job start Mon Mar 30 2020 04:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.49218 * 2 1 4 4 C 1.53058 * 109.50633 * 120.04929 * 2 1 3 5 5 N 1.46959 * 109.36441 * 178.38085 * 4 2 1 6 6 C 1.46898 * 110.99798 * 176.81328 * 5 4 2 7 7 C 1.53006 * 109.47006 * 189.84309 * 6 5 4 8 8 C 1.50698 * 109.47184 * 179.97438 * 7 6 5 9 9 H 1.08005 * 119.99819 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00046 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00192 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99979 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47261 * 60.00310 * 12 10 8 15 15 H 1.48500 * 109.47454 * 300.00304 * 12 10 8 16 16 C 1.46962 * 110.88074 * 300.68025 * 5 4 2 17 17 C 1.53049 * 109.36280 * 59.31998 * 16 5 4 18 18 N 1.46954 * 109.49174 * 239.95055 * 2 1 3 19 19 C 1.46898 * 110.99807 * 56.82513 * 18 2 1 20 20 C 1.52993 * 109.47510 * 57.75194 * 19 18 2 21 21 O 1.42901 * 109.46905 * 64.99789 * 20 19 18 22 22 H 1.09004 * 109.46980 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47267 * 300.04475 * 1 2 3 24 24 H 1.08997 * 109.47031 * 60.04977 * 1 2 3 25 25 H 1.09004 * 109.48588 * 58.41600 * 4 2 1 26 26 H 1.08998 * 109.48921 * 298.35039 * 4 2 1 27 27 H 1.09001 * 109.47062 * 69.84563 * 6 5 4 28 28 H 1.09001 * 109.47392 * 309.84011 * 6 5 4 29 29 H 1.09001 * 109.47002 * 60.00218 * 7 6 5 30 30 H 1.08993 * 109.46955 * 299.99780 * 7 6 5 31 31 H 0.97001 * 119.99934 * 359.97438 * 11 10 8 32 32 H 1.08997 * 109.48590 * 179.29168 * 16 5 4 33 33 H 1.09008 * 109.48480 * 299.33338 * 16 5 4 34 34 H 1.08996 * 109.49005 * 61.57041 * 17 16 5 35 35 H 1.09003 * 109.48317 * 181.63233 * 17 16 5 36 36 H 1.09004 * 109.46759 * 177.75625 * 19 18 2 37 37 H 1.09007 * 109.47157 * 297.75048 * 19 18 2 38 38 H 1.09000 * 109.47672 * 185.00124 * 20 19 18 39 39 H 1.09001 * 109.46958 * 305.00292 * 20 19 18 40 40 H 0.96704 * 114.00289 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0410 -0.7224 1.2488 5 7 3.5101 -0.7546 1.2262 6 6 4.0419 -1.3744 2.4473 7 6 5.5574 -1.1717 2.5036 8 6 6.1029 -1.8069 3.7566 9 1 5.4355 -2.3057 4.4438 10 6 7.4542 -1.7523 4.0251 11 7 8.2670 -1.1455 3.1881 12 14 8.1304 -2.5403 5.5779 13 1 9.6014 -2.3436 5.6327 14 1 7.8250 -3.9936 5.5690 15 1 7.5026 -1.9099 6.7668 16 6 4.0004 -1.4483 0.0270 17 6 3.4893 -0.7259 -1.2217 18 7 2.0203 -0.6937 -1.1991 19 6 1.4885 -0.0740 -2.4202 20 6 1.8844 1.4034 -2.4564 21 8 3.3050 1.5133 -2.5645 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5145 0.8896 24 1 -0.3633 0.5130 -0.8904 25 1 1.6551 -1.7418 1.2627 26 1 1.7025 -0.1929 2.1394 27 1 3.8179 -2.4411 2.4405 28 1 3.5808 -0.9118 3.3200 29 1 5.7813 -0.1050 2.5104 30 1 6.0185 -1.6343 1.6310 31 1 7.9158 -0.7366 2.3816 32 1 5.0904 -1.4480 0.0269 33 1 3.6370 -2.4760 0.0273 34 1 3.8753 0.2934 -1.2357 35 1 3.8279 -1.2555 -2.1123 36 1 1.8985 -0.5815 -3.2934 37 1 0.4018 -0.1592 -2.4273 38 1 1.4163 1.8841 -3.3154 39 1 1.5509 1.8915 -1.5406 40 1 3.6281 2.4244 -2.5925 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187716100.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:45 Heat of formation + Delta-G solvation = -44.755592 kcal Electronic energy + Delta-G solvation = -18480.385348 eV Core-core repulsion = 15715.911863 eV Total energy + Delta-G solvation = -2764.473485 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.70945 -37.10163 -35.35591 -33.22992 -32.22299 -30.44960 -28.51606 -27.03790 -25.13634 -23.29611 -22.73034 -21.83001 -20.04064 -19.11795 -17.69325 -16.71732 -16.21400 -15.61806 -15.01544 -14.75768 -14.17000 -14.06401 -13.65887 -13.41548 -13.09199 -12.76226 -12.59354 -12.24893 -11.94243 -11.80226 -11.69678 -11.58597 -11.17955 -10.99433 -10.79412 -10.64935 -10.28300 -10.09925 -9.94591 -9.91140 -9.54583 -8.50859 -8.25347 -8.10081 -7.69649 -6.30377 -3.98568 3.47283 3.49677 3.68307 3.87735 4.21442 4.41275 4.63124 4.84949 4.96098 5.04213 5.15911 5.20700 5.33023 5.40122 5.47522 5.60366 5.66288 5.72180 5.80953 5.84298 5.91150 6.01018 6.07059 6.23413 6.28388 6.41830 6.43934 6.60844 6.88927 7.14851 7.22570 7.38676 7.45240 7.50949 7.76141 7.80302 8.30956 8.52748 8.95006 9.73700 11.10800 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.040026 B = 0.004961 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.381120 B = 5642.571680 C = 6070.940694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.080 3.920 3 H 0.050 0.950 4 C 0.063 3.937 5 N -0.541 5.541 6 C 0.071 3.929 7 C 0.016 3.984 8 C -0.603 4.603 9 H 0.047 0.953 10 C 0.015 3.985 11 N -0.913 5.913 12 Si 1.069 2.931 13 H -0.282 1.282 14 H -0.289 1.289 15 H -0.288 1.288 16 C 0.056 3.944 17 C 0.053 3.947 18 N -0.532 5.532 19 C 0.053 3.947 20 C 0.035 3.965 21 O -0.559 6.559 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.034 0.966 26 H 0.072 0.928 27 H 0.021 0.979 28 H 0.060 0.940 29 H 0.014 0.986 30 H 0.008 0.992 31 H 0.269 0.731 32 H 0.084 0.916 33 H 0.030 0.970 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.043 0.957 39 H 0.049 0.951 40 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.472 4.636 -10.945 19.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 H 0.068 0.932 4 C -0.066 4.066 5 N -0.266 5.266 6 C -0.056 4.056 7 C -0.021 4.021 8 C -0.642 4.642 9 H 0.065 0.935 10 C -0.188 4.188 11 N -0.549 5.549 12 Si 0.897 3.103 13 H -0.208 1.208 14 H -0.215 1.215 15 H -0.215 1.215 16 C -0.073 4.073 17 C -0.074 4.074 18 N -0.256 5.256 19 C -0.076 4.076 20 C -0.044 4.044 21 O -0.365 6.365 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.090 0.910 27 H 0.039 0.961 28 H 0.079 0.921 29 H 0.033 0.967 30 H 0.026 0.974 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.048 0.952 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -14.114 3.689 -10.070 17.726 hybrid contribution -1.525 0.874 -0.877 1.964 sum -15.638 4.563 -10.947 19.627 Atomic orbital electron populations 1.21887 0.94699 1.02449 1.01427 1.21692 0.94346 0.96551 0.90286 0.93170 1.22122 0.89120 0.98841 0.96507 1.62246 1.06498 1.54524 1.03289 1.22157 0.98798 0.95219 0.89415 1.19209 0.89208 0.96855 0.96857 1.22020 0.95308 1.39276 1.07553 0.93513 1.25817 0.93663 0.96224 1.03119 1.70763 1.37950 1.33963 1.12263 0.83549 0.76172 0.75836 0.74699 1.20776 1.21528 1.21489 1.22208 1.00643 0.95081 0.89328 1.22441 0.85940 1.02044 0.97011 1.62354 1.10008 1.52133 1.01095 1.22329 1.00285 0.90818 0.94134 1.23002 0.82160 0.99602 0.99667 1.86671 1.21092 1.31930 1.96802 0.91861 0.92159 0.92719 0.94788 0.90970 0.96103 0.92117 0.96733 0.97400 0.92014 0.89752 0.95187 0.90387 0.91346 0.90295 0.89343 0.93857 0.93288 0.78048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.86 37.15 0.33 -1.19 16 2 C 0.08 1.08 2.01 -67.66 -0.14 0.95 16 3 H 0.05 0.73 6.34 -51.93 -0.33 0.40 16 4 C 0.06 1.02 4.89 -3.76 -0.02 1.00 16 5 N -0.54 -10.55 4.71 -234.45 -1.10 -11.66 16 6 C 0.07 1.60 4.90 -3.82 -0.02 1.58 16 7 C 0.02 0.43 4.21 -27.88 -0.12 0.31 16 8 C -0.60 -17.76 9.11 -34.44 -0.31 -18.07 16 9 H 0.05 1.35 7.74 -52.48 -0.41 0.94 16 10 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 11 N -0.91 -28.72 13.65 55.43 0.76 -27.97 16 12 Si 1.07 25.88 29.90 -169.99 -5.08 20.80 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 16 C 0.06 1.04 5.41 -3.76 -0.02 1.02 16 17 C 0.05 0.84 4.88 -3.77 -0.02 0.82 16 18 N -0.53 -7.37 4.73 -226.49 -1.07 -8.44 16 19 C 0.05 0.57 5.40 -3.83 -0.02 0.55 16 20 C 0.04 0.35 6.81 37.15 0.25 0.60 16 21 O -0.56 -6.35 10.29 -35.23 -0.36 -6.72 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.48 6.40 -51.93 -0.33 0.15 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 27 H 0.02 0.47 8.12 -51.93 -0.42 0.05 16 28 H 0.06 1.35 8.03 -51.93 -0.42 0.93 16 29 H 0.01 0.41 8.01 -51.93 -0.42 0.00 16 30 H 0.01 0.22 6.35 -51.93 -0.33 -0.11 16 31 H 0.27 8.49 7.22 -40.82 -0.29 8.19 16 32 H 0.08 1.72 6.33 -51.93 -0.33 1.39 16 33 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.08 1.32 5.35 -51.93 -0.28 1.04 16 35 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 36 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 37 H 0.09 0.80 6.38 -51.92 -0.33 0.47 16 38 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.05 0.50 6.17 -51.93 -0.32 0.18 16 40 H 0.37 2.82 9.12 45.56 0.42 3.23 16 LS Contribution 303.12 15.07 4.57 4.57 Total: -1.00 -32.74 303.12 -8.44 -41.18 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.96 Total: 0.31 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -0.18 Total: -12.08 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -1.42 Total: -48.06 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.36 Total: -6.72 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -5.08 Total: 20.80 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.74 -8.44 -41.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187716100.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.578 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds