Wall clock time and date at job start Mon Mar 30 2020 04:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.49218 * 2 1 4 4 C 1.53058 * 109.50633 * 120.04929 * 2 1 3 5 5 N 1.46959 * 109.36441 * 178.38085 * 4 2 1 6 6 C 1.46898 * 110.99798 * 176.81328 * 5 4 2 7 7 C 1.53006 * 109.47006 * 189.84309 * 6 5 4 8 8 C 1.50698 * 109.47184 * 179.97438 * 7 6 5 9 9 H 1.08005 * 119.99819 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00046 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00192 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99979 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47261 * 60.00310 * 12 10 8 15 15 H 1.48500 * 109.47454 * 300.00304 * 12 10 8 16 16 C 1.46962 * 110.88074 * 300.68025 * 5 4 2 17 17 C 1.53049 * 109.36280 * 59.31998 * 16 5 4 18 18 N 1.46954 * 109.49174 * 239.95055 * 2 1 3 19 19 C 1.46898 * 110.99807 * 56.82513 * 18 2 1 20 20 C 1.52993 * 109.47510 * 57.75194 * 19 18 2 21 21 O 1.42901 * 109.46905 * 64.99789 * 20 19 18 22 22 H 1.09004 * 109.46980 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47267 * 300.04475 * 1 2 3 24 24 H 1.08997 * 109.47031 * 60.04977 * 1 2 3 25 25 H 1.09004 * 109.48588 * 58.41600 * 4 2 1 26 26 H 1.08998 * 109.48921 * 298.35039 * 4 2 1 27 27 H 1.09001 * 109.47062 * 69.84563 * 6 5 4 28 28 H 1.09001 * 109.47392 * 309.84011 * 6 5 4 29 29 H 1.09001 * 109.47002 * 60.00218 * 7 6 5 30 30 H 1.08993 * 109.46955 * 299.99780 * 7 6 5 31 31 H 0.97001 * 119.99934 * 359.97438 * 11 10 8 32 32 H 1.08997 * 109.48590 * 179.29168 * 16 5 4 33 33 H 1.09008 * 109.48480 * 299.33338 * 16 5 4 34 34 H 1.08996 * 109.49005 * 61.57041 * 17 16 5 35 35 H 1.09003 * 109.48317 * 181.63233 * 17 16 5 36 36 H 1.09004 * 109.46759 * 177.75625 * 19 18 2 37 37 H 1.09007 * 109.47157 * 297.75048 * 19 18 2 38 38 H 1.09000 * 109.47672 * 185.00124 * 20 19 18 39 39 H 1.09001 * 109.46958 * 305.00292 * 20 19 18 40 40 H 0.96704 * 114.00289 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0410 -0.7224 1.2488 5 7 3.5101 -0.7546 1.2262 6 6 4.0419 -1.3744 2.4473 7 6 5.5574 -1.1717 2.5036 8 6 6.1029 -1.8069 3.7566 9 1 5.4355 -2.3057 4.4438 10 6 7.4542 -1.7523 4.0251 11 7 8.2670 -1.1455 3.1881 12 14 8.1304 -2.5403 5.5779 13 1 9.6014 -2.3436 5.6327 14 1 7.8250 -3.9936 5.5690 15 1 7.5026 -1.9099 6.7668 16 6 4.0004 -1.4483 0.0270 17 6 3.4893 -0.7259 -1.2217 18 7 2.0203 -0.6937 -1.1991 19 6 1.4885 -0.0740 -2.4202 20 6 1.8844 1.4034 -2.4564 21 8 3.3050 1.5133 -2.5645 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5145 0.8896 24 1 -0.3633 0.5130 -0.8904 25 1 1.6551 -1.7418 1.2627 26 1 1.7025 -0.1929 2.1394 27 1 3.8179 -2.4411 2.4405 28 1 3.5808 -0.9118 3.3200 29 1 5.7813 -0.1050 2.5104 30 1 6.0185 -1.6343 1.6310 31 1 7.9158 -0.7366 2.3816 32 1 5.0904 -1.4480 0.0269 33 1 3.6370 -2.4760 0.0273 34 1 3.8753 0.2934 -1.2357 35 1 3.8279 -1.2555 -2.1123 36 1 1.8985 -0.5815 -3.2934 37 1 0.4018 -0.1592 -2.4273 38 1 1.4163 1.8841 -3.3154 39 1 1.5509 1.8915 -1.5406 40 1 3.6281 2.4244 -2.5925 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187716100.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:44 Heat of formation + Delta-G solvation = -71.111984 kcal Electronic energy + Delta-G solvation = -18481.528247 eV Core-core repulsion = 15715.911863 eV Total energy + Delta-G solvation = -2765.616384 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.88868 -38.29450 -36.64904 -35.28580 -33.36208 -32.05440 -30.01016 -28.15056 -26.77275 -25.01917 -23.95673 -23.25925 -21.71657 -20.27604 -18.96442 -18.49572 -17.33155 -16.70437 -16.35703 -16.24018 -15.76127 -15.53659 -15.28923 -14.78746 -14.51865 -14.09493 -13.93485 -13.60798 -13.47787 -12.96090 -12.89608 -12.74174 -12.61902 -12.55618 -12.11873 -12.06947 -11.98686 -11.89721 -11.63339 -11.29122 -10.77716 -10.71821 -10.54087 -9.36928 -9.11150 -8.71139 -6.41245 1.52118 1.61395 1.80877 2.55699 2.87742 2.95630 3.15079 3.43015 3.80401 3.98651 4.01106 4.18188 4.24769 4.30451 4.36210 4.36867 4.43882 4.50544 4.57422 4.70606 4.72566 4.79083 4.79277 4.88335 4.97975 5.04549 5.06719 5.19695 5.25315 5.38048 5.40481 5.83746 6.03072 6.08514 6.15843 6.22072 6.25551 6.55325 6.82065 7.41781 8.69855 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.040026 B = 0.004961 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.381120 B = 5642.571680 C = 6070.940694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.084 3.916 3 H 0.043 0.957 4 C 0.060 3.940 5 N -0.549 5.549 6 C 0.086 3.914 7 C 0.023 3.977 8 C -0.622 4.622 9 H 0.051 0.949 10 C -0.038 4.038 11 N -0.936 5.936 12 Si 1.121 2.879 13 H -0.282 1.282 14 H -0.269 1.269 15 H -0.267 1.267 16 C 0.058 3.942 17 C 0.066 3.934 18 N -0.539 5.539 19 C 0.050 3.950 20 C 0.036 3.964 21 O -0.584 6.584 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.031 0.969 26 H 0.081 0.919 27 H 0.015 0.985 28 H 0.065 0.935 29 H -0.012 1.012 30 H -0.012 1.012 31 H 0.254 0.746 32 H 0.055 0.945 33 H 0.023 0.977 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.069 0.931 39 H 0.048 0.952 40 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.462 4.758 -10.901 21.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.024 4.024 3 H 0.061 0.939 4 C -0.068 4.068 5 N -0.274 5.274 6 C -0.041 4.041 7 C -0.014 4.014 8 C -0.660 4.660 9 H 0.069 0.931 10 C -0.235 4.235 11 N -0.573 5.573 12 Si 0.941 3.059 13 H -0.207 1.207 14 H -0.194 1.194 15 H -0.192 1.192 16 C -0.070 4.070 17 C -0.062 4.062 18 N -0.264 5.264 19 C -0.077 4.077 20 C -0.043 4.043 21 O -0.392 6.392 22 H 0.081 0.919 23 H 0.090 0.910 24 H 0.095 0.905 25 H 0.049 0.951 26 H 0.099 0.901 27 H 0.034 0.966 28 H 0.083 0.917 29 H 0.007 0.993 30 H 0.007 0.993 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.041 0.959 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.131 0.869 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -16.146 3.833 -10.055 19.403 hybrid contribution -0.934 0.868 -0.957 1.594 sum -17.080 4.701 -11.012 20.858 Atomic orbital electron populations 1.21838 0.91684 1.02932 1.03151 1.21681 0.96525 0.95392 0.88807 0.93929 1.22280 0.86503 0.99297 0.98725 1.62187 1.09001 1.54037 1.02171 1.21823 0.95854 0.95146 0.91286 1.19064 0.92356 0.94614 0.95389 1.22444 0.95926 1.39299 1.08361 0.93061 1.27515 0.94457 0.95814 1.05702 1.70907 1.38361 1.35505 1.12502 0.82905 0.75596 0.76105 0.71280 1.20728 1.19395 1.19198 1.22148 0.99009 0.95232 0.90604 1.22231 0.87753 1.01000 0.95248 1.62337 1.08273 1.53181 1.02571 1.22472 1.01570 0.91344 0.92356 1.23022 0.81590 0.98930 1.00752 1.86604 1.22209 1.33571 1.96859 0.91938 0.90997 0.90521 0.95064 0.90095 0.96635 0.91690 0.99348 0.99341 0.93678 0.92686 0.95870 0.91268 0.90944 0.90481 0.86853 0.91255 0.93394 0.76341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.86 71.98 0.64 -1.78 16 2 C 0.08 2.13 2.01 44.92 0.09 2.22 16 3 H 0.04 1.16 6.34 -2.39 -0.02 1.15 16 4 C 0.06 1.89 4.89 86.31 0.42 2.31 16 5 N -0.55 -21.78 4.71 -895.66 -4.22 -26.00 16 6 C 0.09 3.98 4.90 86.31 0.42 4.40 16 7 C 0.02 1.30 4.21 29.85 0.13 1.42 16 8 C -0.62 -37.26 9.11 25.60 0.23 -37.02 16 9 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 10 C -0.04 -2.26 5.46 84.65 0.46 -1.80 16 11 N -0.94 -60.28 13.65 21.45 0.29 -59.99 16 12 Si 1.12 51.55 29.90 68.60 2.05 53.61 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 14 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 15 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 16 C 0.06 2.26 5.41 86.31 0.47 2.72 16 17 C 0.07 2.08 4.88 86.31 0.42 2.50 16 18 N -0.54 -14.09 4.73 -870.49 -4.12 -18.21 16 19 C 0.05 0.96 5.40 86.30 0.47 1.42 16 20 C 0.04 0.62 6.81 71.98 0.49 1.11 16 21 O -0.58 -12.53 10.29 -148.98 -1.53 -14.07 16 22 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.08 1.02 6.40 -2.39 -0.02 1.01 16 25 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.08 2.38 8.07 -2.39 -0.02 2.36 16 27 H 0.02 0.72 8.12 -2.39 -0.02 0.70 16 28 H 0.06 2.90 8.03 -2.39 -0.02 2.88 16 29 H -0.01 -0.72 8.01 -2.39 -0.02 -0.74 16 30 H -0.01 -0.69 6.35 -2.39 -0.02 -0.71 16 31 H 0.25 16.72 7.22 -92.71 -0.67 16.06 16 32 H 0.05 2.40 6.33 -2.39 -0.02 2.39 16 33 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.07 2.35 5.35 -2.39 -0.01 2.34 16 35 H 0.07 2.21 8.11 -2.39 -0.02 2.19 16 36 H 0.08 1.52 8.10 -2.38 -0.02 1.50 16 37 H 0.11 1.60 6.38 -2.38 -0.02 1.59 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.05 0.84 6.17 -2.39 -0.01 0.83 16 40 H 0.39 5.43 9.12 -74.05 -0.68 4.76 16 Total: -1.00 -71.68 303.12 -2.85 -74.53 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.44 Total: 12.63 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: 4.24 Total: -22.50 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -8.05 Total: -104.19 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -1.53 Total: -14.07 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 2.05 Total: 53.61 kcal Total: -71.68 -2.85 -74.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187716100.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.417 kcal (2) G-P(sol) polarization free energy of solvation -71.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds