Wall clock time and date at job start Mon Mar 30 2020 05:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47485 * 2 1 4 4 O 1.42900 * 109.47269 * 239.99694 * 2 1 3 5 5 C 1.53002 * 109.46996 * 119.99828 * 2 1 3 6 6 N 1.46894 * 109.47028 * 182.97628 * 5 2 1 7 7 C 1.46958 * 111.00179 * 199.59380 * 6 5 2 8 8 C 1.53052 * 109.36743 * 176.81185 * 7 6 5 9 9 N 1.46963 * 109.36279 * 58.40691 * 8 7 6 10 10 C 1.46894 * 110.99903 * 176.81302 * 9 8 7 11 11 H 1.09004 * 109.46831 * 176.06499 * 10 9 8 12 12 C 1.52997 * 109.47069 * 296.05778 * 10 9 8 13 13 C 1.50694 * 109.47429 * 56.06204 * 10 9 8 14 14 H 1.08000 * 120.00159 * 354.75421 * 13 10 9 15 15 C 1.37878 * 119.99799 * 174.75390 * 13 10 9 16 16 N 1.31510 * 120.00329 * 0.02562 * 15 13 10 17 17 Si 1.86806 * 119.99778 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.46857 * 60.00698 * 17 15 13 19 19 H 1.48498 * 109.47021 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47207 * 300.00365 * 17 15 13 21 21 C 1.46963 * 110.87852 * 300.67877 * 9 8 7 22 22 C 1.46963 * 110.99903 * 75.80047 * 6 5 2 23 23 H 1.08993 * 109.47119 * 300.00417 * 1 2 3 24 24 H 1.09009 * 109.46975 * 60.00307 * 1 2 3 25 25 H 1.09000 * 109.47022 * 179.97438 * 1 2 3 26 26 H 0.96703 * 114.00330 * 299.99991 * 4 2 1 27 27 H 1.08987 * 109.47144 * 302.98136 * 5 2 1 28 28 H 1.09007 * 109.46699 * 62.98300 * 5 2 1 29 29 H 1.08997 * 109.49556 * 296.78744 * 7 6 5 30 30 H 1.09009 * 109.48736 * 56.85185 * 7 6 5 31 31 H 1.08998 * 109.49000 * 298.43927 * 8 7 6 32 32 H 1.08998 * 109.50659 * 178.38307 * 8 7 6 33 33 H 1.09006 * 109.47553 * 300.00616 * 12 10 9 34 34 H 1.09003 * 109.47227 * 60.00587 * 12 10 9 35 35 H 1.08997 * 109.47332 * 180.02562 * 12 10 9 36 36 H 0.96998 * 119.99975 * 180.02562 * 16 15 13 37 37 H 1.08993 * 109.48704 * 299.35179 * 21 9 8 38 38 H 1.08994 * 109.50411 * 179.29273 * 21 9 8 39 39 H 1.09001 * 109.48816 * 303.15143 * 22 6 5 40 40 H 1.09000 * 109.48591 * 63.19577 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 7 3.5071 -0.6593 1.2858 7 6 4.0563 -1.6965 2.1703 8 6 5.5852 -1.6499 2.1190 9 7 6.0460 -0.3155 2.5277 10 6 7.5132 -0.2535 2.5642 11 1 7.8281 0.7627 2.8013 12 6 8.0376 -1.2127 3.6346 13 6 8.0663 -0.6501 1.2197 14 1 7.4016 -1.0022 0.4448 15 6 9.4212 -0.5634 0.9789 16 7 10.2307 -0.1351 1.9227 17 14 10.1070 -1.0557 -0.6875 18 1 9.5000 -0.2059 -1.7432 19 1 11.5806 -0.8721 -0.6901 20 1 9.7857 -2.4809 -0.9536 21 6 5.4969 0.7218 1.6432 22 6 3.9679 0.6751 1.6944 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7210 -1.5953 -1.2329 27 1 1.6337 -0.2392 2.1383 28 1 1.7209 -1.7632 1.2229 29 1 3.7210 -1.5181 3.1920 30 1 3.7111 -2.6763 1.8398 31 1 5.9214 -1.8553 1.1028 32 1 5.9951 -2.3992 2.7961 33 1 7.6375 -0.9258 4.6071 34 1 7.7227 -2.2290 3.3976 35 1 9.1263 -1.1664 3.6620 36 1 11.1838 -0.0738 1.7531 37 1 5.8321 0.5433 0.6216 38 1 5.8419 1.7016 1.9733 39 1 3.5583 1.4245 1.0170 40 1 3.6313 0.8806 2.7106 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189297385.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:38 Heat of formation + Delta-G solvation = -42.578686 kcal Electronic energy + Delta-G solvation = -18608.947767 eV Core-core repulsion = 15844.568680 eV Total energy + Delta-G solvation = -2764.379087 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.02154 -37.35976 -35.15306 -32.52641 -31.18193 -30.37380 -29.19126 -26.46913 -25.06913 -23.80308 -22.78532 -21.31672 -20.09623 -18.95220 -16.54779 -16.20759 -15.86167 -15.35355 -14.68658 -14.42611 -14.21643 -14.08903 -13.55677 -13.38507 -12.95132 -12.47237 -12.36908 -12.11953 -11.66018 -11.63479 -11.23103 -11.00405 -10.97716 -10.74743 -10.59502 -10.53413 -10.42419 -10.07787 -9.91187 -9.78051 -9.45705 -9.12517 -8.34760 -7.95792 -7.07545 -5.94836 -4.05709 3.33856 3.37937 3.42152 4.03279 4.45920 4.54770 4.75595 5.05089 5.08104 5.18546 5.30700 5.32458 5.43100 5.57483 5.64546 5.68930 5.87249 5.88880 5.95818 6.01547 6.09239 6.20928 6.37181 6.64623 6.82136 6.93988 6.96351 7.05818 7.21467 7.37019 7.41973 7.59796 7.74970 7.77933 7.99372 8.19891 8.36236 8.49245 9.04617 9.61759 11.07121 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.030264 B = 0.006139 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.973103 B = 4560.070267 C = 5064.302160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.107 3.893 3 H 0.096 0.904 4 O -0.548 6.548 5 C 0.023 3.977 6 N -0.527 5.527 7 C 0.060 3.940 8 C 0.062 3.938 9 N -0.540 5.540 10 C 0.206 3.794 11 H 0.041 0.959 12 C -0.125 4.125 13 C -0.540 4.540 14 H 0.058 0.942 15 C 0.068 3.932 16 N -0.889 5.889 17 Si 0.887 3.113 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.066 3.934 22 C 0.060 3.940 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.368 0.632 27 H 0.039 0.961 28 H 0.070 0.930 29 H 0.031 0.969 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.015 0.985 34 H 0.027 0.973 35 H 0.074 0.926 36 H 0.261 0.739 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.331 -1.214 -0.540 16.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.048 3.952 3 H 0.114 0.886 4 O -0.352 6.352 5 C -0.106 4.106 6 N -0.252 5.252 7 C -0.068 4.068 8 C -0.067 4.067 9 N -0.264 5.264 10 C 0.100 3.900 11 H 0.059 0.941 12 C -0.184 4.184 13 C -0.579 4.579 14 H 0.077 0.923 15 C -0.134 4.134 16 N -0.528 5.528 17 Si 0.715 3.285 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.063 4.063 22 C -0.068 4.068 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.214 0.786 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.034 0.966 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -15.837 -0.586 -0.593 15.859 hybrid contribution 0.181 -0.804 -0.737 1.106 sum -15.656 -1.391 -1.330 15.774 Atomic orbital electron populations 1.22500 0.96836 1.02331 1.02573 1.21875 0.91503 0.97031 0.84821 0.88643 1.86647 1.77323 1.28321 1.42946 1.22836 0.89541 1.00708 0.97481 1.62057 1.06470 1.04655 1.51998 1.22256 0.96789 0.93976 0.93821 1.21971 0.91283 0.92942 1.00471 1.62676 1.12644 1.02324 1.48804 1.19254 0.80476 0.96404 0.93889 0.94145 1.21736 1.02624 0.97960 0.96039 1.21699 0.92689 1.44575 0.98957 0.92347 1.24909 0.97116 0.94916 0.96501 1.69904 1.03780 1.46563 1.32548 0.86736 0.77743 0.79149 0.84857 1.20315 1.21348 1.20340 1.21876 0.91323 0.95985 0.97148 1.22251 0.97051 0.89796 0.97708 0.91810 0.91779 0.92449 0.78557 0.94323 0.91122 0.95116 0.91621 0.93265 0.91062 0.96628 0.95412 0.90722 0.92935 0.93396 0.91586 0.91484 0.95026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 9.53 37.16 0.35 -1.20 16 2 C 0.11 1.22 3.66 -26.73 -0.10 1.12 16 3 H 0.10 1.18 6.79 -51.93 -0.35 0.83 16 4 O -0.55 -7.23 13.26 -35.23 -0.47 -7.70 16 5 C 0.02 0.28 4.65 -3.83 -0.02 0.26 16 6 N -0.53 -8.37 4.56 -234.46 -1.07 -9.44 16 7 C 0.06 0.98 5.56 -3.77 -0.02 0.96 16 8 C 0.06 1.25 4.96 -3.76 -0.02 1.23 16 9 N -0.54 -11.80 4.68 -227.88 -1.07 -12.86 16 10 C 0.21 5.22 2.23 -68.87 -0.15 5.07 16 11 H 0.04 1.13 8.07 -51.93 -0.42 0.71 16 12 C -0.13 -3.05 8.90 37.16 0.33 -2.72 16 13 C -0.54 -14.75 7.10 -34.44 -0.24 -15.00 16 14 H 0.06 1.63 5.81 -52.49 -0.30 1.33 16 15 C 0.07 1.88 5.32 -17.82 -0.09 1.79 16 16 N -0.89 -25.51 11.71 55.43 0.65 -24.86 16 17 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 C 0.07 1.33 5.36 -3.76 -0.02 1.31 16 22 C 0.06 0.99 5.43 -3.76 -0.02 0.97 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.37 3.53 9.05 45.56 0.41 3.94 16 27 H 0.04 0.45 7.99 -51.94 -0.42 0.03 16 28 H 0.07 0.77 7.84 -51.93 -0.41 0.36 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.95 8.00 -51.92 -0.42 0.54 16 31 H 0.05 1.12 6.28 -51.93 -0.33 0.79 16 32 H 0.07 1.43 6.26 -51.93 -0.32 1.11 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.03 0.64 6.43 -51.93 -0.33 0.31 16 35 H 0.07 1.98 6.50 -51.93 -0.34 1.64 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.05 1.10 7.18 -51.93 -0.37 0.72 16 38 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 39 H 0.07 1.01 6.75 -51.93 -0.35 0.66 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 305.97 15.07 4.61 4.61 Total: -1.00 -29.73 305.97 -8.41 -38.13 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.04 Total: 1.68 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 0.00 Total: -6.20 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -1.49 Total: -47.17 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.47 Total: -7.70 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.73 -8.41 -38.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189297385.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.444 kcal (2) G-P(sol) polarization free energy of solvation -29.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds