Wall clock time and date at job start Mon Mar 30 2020 05:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47485 * 2 1 4 4 O 1.42900 * 109.47269 * 239.99694 * 2 1 3 5 5 C 1.53002 * 109.46996 * 119.99828 * 2 1 3 6 6 N 1.46894 * 109.47028 * 182.97628 * 5 2 1 7 7 C 1.46958 * 111.00179 * 199.59380 * 6 5 2 8 8 C 1.53052 * 109.36743 * 176.81185 * 7 6 5 9 9 N 1.46963 * 109.36279 * 58.40691 * 8 7 6 10 10 C 1.46894 * 110.99903 * 176.81302 * 9 8 7 11 11 H 1.09004 * 109.46831 * 176.06499 * 10 9 8 12 12 C 1.52997 * 109.47069 * 296.05778 * 10 9 8 13 13 C 1.50694 * 109.47429 * 56.06204 * 10 9 8 14 14 H 1.08000 * 120.00159 * 354.75421 * 13 10 9 15 15 C 1.37878 * 119.99799 * 174.75390 * 13 10 9 16 16 N 1.31510 * 120.00329 * 0.02562 * 15 13 10 17 17 Si 1.86806 * 119.99778 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.46857 * 60.00698 * 17 15 13 19 19 H 1.48498 * 109.47021 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47207 * 300.00365 * 17 15 13 21 21 C 1.46963 * 110.87852 * 300.67877 * 9 8 7 22 22 C 1.46963 * 110.99903 * 75.80047 * 6 5 2 23 23 H 1.08993 * 109.47119 * 300.00417 * 1 2 3 24 24 H 1.09009 * 109.46975 * 60.00307 * 1 2 3 25 25 H 1.09000 * 109.47022 * 179.97438 * 1 2 3 26 26 H 0.96703 * 114.00330 * 299.99991 * 4 2 1 27 27 H 1.08987 * 109.47144 * 302.98136 * 5 2 1 28 28 H 1.09007 * 109.46699 * 62.98300 * 5 2 1 29 29 H 1.08997 * 109.49556 * 296.78744 * 7 6 5 30 30 H 1.09009 * 109.48736 * 56.85185 * 7 6 5 31 31 H 1.08998 * 109.49000 * 298.43927 * 8 7 6 32 32 H 1.08998 * 109.50659 * 178.38307 * 8 7 6 33 33 H 1.09006 * 109.47553 * 300.00616 * 12 10 9 34 34 H 1.09003 * 109.47227 * 60.00587 * 12 10 9 35 35 H 1.08997 * 109.47332 * 180.02562 * 12 10 9 36 36 H 0.96998 * 119.99975 * 180.02562 * 16 15 13 37 37 H 1.08993 * 109.48704 * 299.35179 * 21 9 8 38 38 H 1.08994 * 109.50411 * 179.29273 * 21 9 8 39 39 H 1.09001 * 109.48816 * 303.15143 * 22 6 5 40 40 H 1.09000 * 109.48591 * 63.19577 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 7 3.5071 -0.6593 1.2858 7 6 4.0563 -1.6965 2.1703 8 6 5.5852 -1.6499 2.1190 9 7 6.0460 -0.3155 2.5277 10 6 7.5132 -0.2535 2.5642 11 1 7.8281 0.7627 2.8013 12 6 8.0376 -1.2127 3.6346 13 6 8.0663 -0.6501 1.2197 14 1 7.4016 -1.0022 0.4448 15 6 9.4212 -0.5634 0.9789 16 7 10.2307 -0.1351 1.9227 17 14 10.1070 -1.0557 -0.6875 18 1 9.5000 -0.2059 -1.7432 19 1 11.5806 -0.8721 -0.6901 20 1 9.7857 -2.4809 -0.9536 21 6 5.4969 0.7218 1.6432 22 6 3.9679 0.6751 1.6944 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7210 -1.5953 -1.2329 27 1 1.6337 -0.2392 2.1383 28 1 1.7209 -1.7632 1.2229 29 1 3.7210 -1.5181 3.1920 30 1 3.7111 -2.6763 1.8398 31 1 5.9214 -1.8553 1.1028 32 1 5.9951 -2.3992 2.7961 33 1 7.6375 -0.9258 4.6071 34 1 7.7227 -2.2290 3.3976 35 1 9.1263 -1.1664 3.6620 36 1 11.1838 -0.0738 1.7531 37 1 5.8321 0.5433 0.6216 38 1 5.8419 1.7016 1.9733 39 1 3.5583 1.4245 1.0170 40 1 3.6313 0.8806 2.7106 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189297385.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:37 Heat of formation + Delta-G solvation = -66.176489 kcal Electronic energy + Delta-G solvation = -18609.971044 eV Core-core repulsion = 15844.568680 eV Total energy + Delta-G solvation = -2765.402365 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.39516 -38.56543 -36.65579 -34.41619 -32.30551 -31.89490 -30.78359 -27.78025 -27.18368 -25.11686 -24.24832 -22.38987 -21.77711 -20.63811 -18.23438 -17.62357 -17.02530 -16.77118 -16.25428 -15.81758 -15.63193 -15.44182 -15.13507 -14.91486 -14.49356 -13.92688 -13.53006 -13.30746 -13.07434 -12.95193 -12.86512 -12.70929 -12.58657 -12.35575 -12.31592 -12.11197 -11.96152 -11.72356 -11.48444 -11.27202 -11.16553 -10.77932 -10.49868 -9.17908 -8.93958 -8.06579 -6.26261 1.37675 1.38121 1.46126 2.40156 2.91982 3.15308 3.40222 3.71128 3.84767 4.05654 4.23621 4.31450 4.36170 4.39378 4.50353 4.55843 4.64770 4.72930 4.76736 4.83198 4.92394 4.92895 5.04646 5.14457 5.17349 5.22129 5.22376 5.28902 5.31434 5.52191 5.67946 5.91845 6.13680 6.16156 6.23148 6.38702 6.62532 6.93496 7.02015 7.44291 8.91807 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.030264 B = 0.006139 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.973103 B = 4560.070267 C = 5064.302160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.107 3.893 3 H 0.080 0.920 4 O -0.575 6.575 5 C 0.027 3.973 6 N -0.545 5.545 7 C 0.070 3.930 8 C 0.064 3.936 9 N -0.537 5.537 10 C 0.208 3.792 11 H 0.006 0.994 12 C -0.113 4.113 13 C -0.547 4.547 14 H 0.047 0.953 15 C 0.022 3.978 16 N -0.914 5.914 17 Si 0.946 3.054 18 H -0.278 1.278 19 H -0.281 1.281 20 H -0.273 1.273 21 C 0.067 3.933 22 C 0.072 3.928 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.382 0.618 27 H 0.052 0.948 28 H 0.089 0.911 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.019 0.981 32 H 0.069 0.931 33 H 0.031 0.969 34 H 0.034 0.966 35 H 0.049 0.951 36 H 0.262 0.738 37 H 0.015 0.985 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.461 -1.998 -0.707 18.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.047 3.953 3 H 0.098 0.902 4 O -0.381 6.381 5 C -0.101 4.101 6 N -0.270 5.270 7 C -0.058 4.058 8 C -0.064 4.064 9 N -0.261 5.261 10 C 0.101 3.899 11 H 0.024 0.976 12 C -0.171 4.171 13 C -0.586 4.586 14 H 0.065 0.935 15 C -0.178 4.178 16 N -0.554 5.554 17 Si 0.772 3.228 18 H -0.204 1.204 19 H -0.206 1.206 20 H -0.198 1.198 21 C -0.062 4.062 22 C -0.056 4.056 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.231 0.769 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.037 0.963 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.033 0.967 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -17.995 -1.382 -0.761 18.064 hybrid contribution 0.817 -0.546 -0.689 1.200 sum -17.177 -1.928 -1.450 17.346 Atomic orbital electron populations 1.22391 0.94274 1.03474 1.03094 1.21904 0.93396 0.95984 0.83967 0.90160 1.86606 1.78046 1.29674 1.43814 1.22913 0.86712 1.02221 0.98279 1.62016 1.09211 1.03827 1.51943 1.22136 0.93566 0.95480 0.94635 1.21982 0.94432 0.91634 0.98397 1.62644 1.10377 1.03773 1.49289 1.19070 0.82872 0.94555 0.93396 0.97563 1.21546 1.00931 0.98066 0.96538 1.21852 0.92801 1.44317 0.99587 0.93460 1.25601 0.97478 0.95056 0.99669 1.70013 1.03954 1.47312 1.34090 0.85805 0.77285 0.78832 0.80875 1.20381 1.20587 1.19822 1.21884 0.94364 0.95227 0.94746 1.22082 0.93769 0.91059 0.98710 0.90658 0.91896 0.90999 0.76926 0.93021 0.89263 0.94274 0.89223 0.96300 0.91279 0.95017 0.94739 0.93163 0.92862 0.96692 0.92187 0.89984 0.94107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 9.53 71.98 0.69 -1.69 16 2 C 0.11 2.16 3.66 30.59 0.11 2.28 16 3 H 0.08 1.85 6.79 -2.39 -0.02 1.83 16 4 O -0.57 -14.10 13.26 -148.98 -1.97 -16.07 16 5 C 0.03 0.55 4.65 86.31 0.40 0.96 16 6 N -0.55 -16.15 4.56 -895.69 -4.08 -20.24 16 7 C 0.07 2.12 5.56 86.31 0.48 2.60 16 8 C 0.06 2.56 4.96 86.31 0.43 2.99 16 9 N -0.54 -23.63 4.68 -874.87 -4.09 -27.72 16 10 C 0.21 10.84 2.23 44.17 0.10 10.94 16 11 H 0.01 0.37 8.07 -2.38 -0.02 0.35 16 12 C -0.11 -5.54 8.90 71.98 0.64 -4.90 16 13 C -0.55 -30.60 7.10 25.60 0.18 -30.42 16 14 H 0.05 2.72 5.81 -2.91 -0.02 2.70 16 15 C 0.02 1.23 5.32 84.66 0.45 1.68 16 16 N -0.91 -53.43 11.71 21.45 0.25 -53.18 16 17 Si 0.95 44.97 29.54 68.60 2.03 46.99 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 21 C 0.07 2.75 5.36 86.31 0.46 3.21 16 22 C 0.07 2.28 5.43 86.31 0.47 2.75 16 23 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.38 6.47 9.05 -74.06 -0.67 5.80 16 27 H 0.05 0.98 7.99 -2.39 -0.02 0.97 16 28 H 0.09 1.56 7.84 -2.38 -0.02 1.54 16 29 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 2.31 8.00 -2.38 -0.02 2.30 16 31 H 0.02 0.86 6.28 -2.39 -0.01 0.85 16 32 H 0.07 2.74 6.26 -2.39 -0.01 2.72 16 33 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.03 1.60 6.43 -2.39 -0.02 1.58 16 35 H 0.05 2.70 6.50 -2.39 -0.02 2.69 16 36 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 37 H 0.01 0.70 7.18 -2.39 -0.02 0.68 16 38 H 0.06 2.48 8.09 -2.39 -0.02 2.46 16 39 H 0.08 2.36 6.75 -2.39 -0.02 2.34 16 40 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -64.52 305.97 -3.12 -67.64 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.34 Total: 12.18 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 4.41 Total: -9.61 kcal Atomic # 7 Polarization: -93.21 SS G_CDS: -7.92 Total: -101.14 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -1.97 Total: -16.07 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.52 -3.12 -67.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189297385.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.466 kcal (2) G-P(sol) polarization free energy of solvation -64.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds