Wall clock time and date at job start Mon Mar 30 2020 05:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47191 * 2 1 4 4 C 1.50704 * 109.47101 * 240.00341 * 2 1 3 5 5 H 1.07995 * 119.99851 * 239.99686 * 4 2 1 6 6 C 1.37880 * 120.00092 * 59.99928 * 4 2 1 7 7 N 1.31516 * 119.99958 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99856 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47292 * 90.00158 * 8 6 4 10 10 H 1.48502 * 109.46954 * 209.99913 * 8 6 4 11 11 H 1.48504 * 109.47181 * 329.99790 * 8 6 4 12 12 N 1.46901 * 109.47131 * 120.00324 * 2 1 3 13 13 C 1.46954 * 110.99655 * 295.00162 * 12 2 1 14 14 C 1.53054 * 109.36054 * 183.19116 * 13 12 2 15 15 N 1.46959 * 109.36409 * 301.59614 * 14 13 12 16 16 C 1.46898 * 110.99800 * 183.19015 * 15 14 13 17 17 C 1.52999 * 109.47064 * 75.84162 * 16 15 14 18 18 H 1.09002 * 109.46842 * 300.51951 * 17 16 15 19 19 C 1.53003 * 109.47261 * 180.52596 * 17 16 15 20 20 O 1.42901 * 109.47439 * 60.52215 * 17 16 15 21 21 C 1.46954 * 110.88030 * 59.32152 * 15 14 13 22 22 C 1.46949 * 111.00191 * 58.80017 * 12 2 1 23 23 H 1.09004 * 109.46505 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47227 * 299.99766 * 1 2 3 25 25 H 1.09005 * 109.46957 * 60.00182 * 1 2 3 26 26 H 0.96998 * 120.00115 * 180.02562 * 7 6 4 27 27 H 1.08993 * 109.49250 * 63.22359 * 13 12 2 28 28 H 1.09002 * 109.51069 * 303.16298 * 13 12 2 29 29 H 1.09003 * 109.48578 * 181.63008 * 14 13 12 30 30 H 1.08995 * 109.49399 * 61.56588 * 14 13 12 31 31 H 1.08988 * 109.47580 * 315.83840 * 16 15 14 32 32 H 1.08997 * 109.46749 * 195.83317 * 16 15 14 33 33 H 1.09003 * 109.46966 * 59.99565 * 19 17 16 34 34 H 1.08997 * 109.47569 * 179.97438 * 19 17 16 35 35 H 1.09004 * 109.47056 * 299.99817 * 19 17 16 36 36 H 0.96699 * 113.99900 * 60.00789 * 20 17 16 37 37 H 1.09005 * 109.48544 * 60.64478 * 21 15 14 38 38 H 1.08993 * 109.48917 * 180.70864 * 21 15 14 39 39 H 1.08999 * 109.49327 * 296.78280 * 22 12 2 40 40 H 1.09003 * 109.48979 * 56.84590 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3226 -1.1193 -4.0080 9 1 1.3449 -2.1613 -4.4125 10 1 2.4873 -0.1399 -5.1120 11 1 3.6310 -1.7563 -3.7120 12 7 2.0197 -0.6926 1.1994 13 6 1.6485 0.0393 2.4185 14 6 2.2436 -0.6700 3.6372 15 7 1.7491 -2.0531 3.6855 16 6 2.2388 -2.7456 4.8850 17 6 1.4532 -2.2661 6.1072 18 1 1.5812 -1.1897 6.2220 19 6 1.9721 -2.9777 7.3583 20 8 0.0670 -2.5647 5.9297 21 6 2.1202 -2.7850 2.4664 22 6 1.5253 -2.0755 1.2478 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7081 1.1610 -3.4844 27 1 0.5628 0.0684 2.5089 28 1 2.0364 1.0566 2.3647 29 1 1.9454 -0.1453 4.5449 30 1 3.3308 -0.6751 3.5602 31 1 3.2972 -2.5263 5.0245 32 1 2.1032 -3.8204 4.7647 33 1 3.0294 -2.7499 7.4937 34 1 1.4127 -2.6358 8.2291 35 1 1.8441 -4.0541 7.2435 36 1 -0.1216 -3.5069 5.8210 37 1 3.2061 -2.8139 2.3761 38 1 1.7322 -3.8020 2.5206 39 1 0.4380 -2.0706 1.3248 40 1 1.8234 -2.6003 0.3401 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189297399.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:41 Heat of formation + Delta-G solvation = -40.202303 kcal Electronic energy + Delta-G solvation = -18521.477159 eV Core-core repulsion = 15757.201120 eV Total energy + Delta-G solvation = -2764.276039 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.10022 -37.43588 -35.21196 -32.62558 -31.24170 -30.36674 -29.06512 -26.39484 -25.21797 -23.82900 -22.93812 -21.35669 -20.49494 -18.58943 -16.55880 -16.22540 -15.83414 -15.42434 -14.72973 -14.50323 -14.28596 -14.08966 -13.67569 -13.33084 -12.90854 -12.55815 -12.42307 -12.22753 -11.83812 -11.56369 -11.34052 -11.07382 -11.04558 -10.79424 -10.63994 -10.56854 -10.33322 -10.19797 -10.01449 -9.87984 -9.53635 -8.80204 -8.35688 -8.01369 -7.06644 -5.97751 -4.01626 3.32338 3.38944 3.42692 3.98599 4.43688 4.51496 4.71311 5.00360 5.03561 5.14009 5.28266 5.34145 5.38035 5.53932 5.61581 5.65001 5.82883 5.84645 5.88988 5.98619 6.03445 6.13179 6.31211 6.53332 6.68292 6.72778 6.89842 6.94746 7.20435 7.31091 7.32762 7.58462 7.73148 7.78411 7.87528 8.17643 8.44262 8.65117 9.04197 9.63295 11.09317 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.049335 B = 0.005116 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.415965 B = 5471.659312 C = 5683.024735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.038 0.962 4 C -0.499 4.499 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.533 5.533 13 C 0.055 3.945 14 C 0.061 3.939 15 N -0.529 5.529 16 C 0.022 3.978 17 C 0.108 3.892 18 H 0.095 0.905 19 C -0.184 4.184 20 O -0.549 6.549 21 C 0.058 3.942 22 C 0.065 3.935 23 H 0.029 0.971 24 H 0.009 0.991 25 H 0.086 0.914 26 H 0.260 0.740 27 H 0.037 0.963 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.035 0.965 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.369 0.631 37 H 0.034 0.966 38 H 0.067 0.933 39 H 0.035 0.965 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.821 -7.012 15.346 16.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.105 3.895 3 H 0.056 0.944 4 C -0.538 4.538 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.258 5.258 13 C -0.074 4.074 14 C -0.067 4.067 15 N -0.253 5.253 16 C -0.106 4.106 17 C 0.048 3.952 18 H 0.113 0.887 19 C -0.243 4.243 20 O -0.353 6.353 21 C -0.070 4.070 22 C -0.063 4.063 23 H 0.048 0.952 24 H 0.028 0.972 25 H 0.105 0.895 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.215 0.785 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.053 0.947 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.708 -6.233 15.240 16.554 hybrid contribution 0.428 -1.013 -0.915 1.431 sum 2.137 -7.246 14.325 16.195 Atomic orbital electron populations 1.22373 1.00747 0.99359 1.00459 1.19281 0.89849 0.94471 0.85930 0.94390 1.21112 1.30531 1.12412 0.89751 0.92070 1.24926 0.95262 0.95116 0.98963 1.69892 1.37058 1.23050 1.23332 0.86539 0.79197 0.79285 0.82620 1.20830 1.21324 1.19916 1.62507 1.59303 1.01613 1.02372 1.22043 0.98310 0.96988 0.90086 1.22193 0.97240 0.88857 0.98387 1.62082 1.59486 1.02378 1.01385 1.22836 0.97132 0.98838 0.91838 1.21866 0.81645 1.00033 0.91649 0.88734 1.22499 1.01837 1.01007 0.98913 1.86626 1.23721 1.29634 1.95314 1.22277 0.98276 0.96631 0.89810 1.21992 0.97311 0.90886 0.96154 0.95163 0.97219 0.89514 0.93046 0.94493 0.91381 0.91457 0.94677 0.94209 0.91051 0.91787 0.91772 0.92404 0.78481 0.94740 0.91507 0.94663 0.89703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 8.27 37.16 0.31 -3.94 16 2 C 0.21 5.40 2.35 -68.86 -0.16 5.23 16 3 H 0.04 1.07 8.11 -51.93 -0.42 0.65 16 4 C -0.50 -13.73 7.90 -34.44 -0.27 -14.00 16 5 H 0.06 1.68 6.77 -52.49 -0.36 1.32 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.66 11.32 55.43 0.63 -25.04 16 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.53 -11.75 4.69 -227.88 -1.07 -12.82 16 13 C 0.05 1.05 5.25 -3.77 -0.02 1.03 16 14 C 0.06 0.98 5.43 -3.76 -0.02 0.96 16 15 N -0.53 -8.12 4.52 -234.48 -1.06 -9.18 16 16 C 0.02 0.26 4.66 -3.83 -0.02 0.24 16 17 C 0.11 1.16 3.65 -26.73 -0.10 1.06 16 18 H 0.09 1.10 6.87 -51.93 -0.36 0.74 16 19 C -0.18 -1.48 9.53 37.16 0.35 -1.12 16 20 O -0.55 -6.81 13.21 -35.23 -0.47 -7.28 16 21 C 0.06 0.95 5.56 -3.77 -0.02 0.93 16 22 C 0.07 1.31 4.86 -3.77 -0.02 1.30 16 23 H 0.03 0.73 6.46 -51.93 -0.34 0.40 16 24 H 0.01 0.21 6.59 -51.93 -0.34 -0.13 16 25 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.04 0.76 6.60 -51.93 -0.34 0.41 16 28 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 29 H 0.07 0.96 6.79 -51.93 -0.35 0.61 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.45 7.99 -51.94 -0.42 0.04 16 32 H 0.07 0.75 7.84 -51.93 -0.41 0.35 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.37 3.31 9.05 45.56 0.41 3.72 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.96 8.00 -51.93 -0.42 0.55 16 39 H 0.04 0.75 6.47 -51.93 -0.34 0.42 16 40 H 0.08 1.82 6.45 -51.93 -0.33 1.49 16 LS Contribution 304.55 15.07 4.59 4.59 Total: -1.00 -29.81 304.55 -8.45 -38.25 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.99 Total: 1.86 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -0.06 Total: -6.77 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: -1.50 Total: -47.03 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.47 Total: -7.28 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.81 -8.45 -38.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189297399.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.949 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds