Wall clock time and date at job start Mon Mar 30 2020 05:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47191 * 2 1 4 4 C 1.50704 * 109.47101 * 240.00341 * 2 1 3 5 5 H 1.07995 * 119.99851 * 239.99686 * 4 2 1 6 6 C 1.37880 * 120.00092 * 59.99928 * 4 2 1 7 7 N 1.31516 * 119.99958 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99856 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47292 * 90.00158 * 8 6 4 10 10 H 1.48502 * 109.46954 * 209.99913 * 8 6 4 11 11 H 1.48504 * 109.47181 * 329.99790 * 8 6 4 12 12 N 1.46901 * 109.47131 * 120.00324 * 2 1 3 13 13 C 1.46954 * 110.99655 * 295.00162 * 12 2 1 14 14 C 1.53054 * 109.36054 * 183.19116 * 13 12 2 15 15 N 1.46959 * 109.36409 * 301.59614 * 14 13 12 16 16 C 1.46898 * 110.99800 * 183.19015 * 15 14 13 17 17 C 1.52999 * 109.47064 * 75.84162 * 16 15 14 18 18 H 1.09002 * 109.46842 * 300.51951 * 17 16 15 19 19 C 1.53003 * 109.47261 * 180.52596 * 17 16 15 20 20 O 1.42901 * 109.47439 * 60.52215 * 17 16 15 21 21 C 1.46954 * 110.88030 * 59.32152 * 15 14 13 22 22 C 1.46949 * 111.00191 * 58.80017 * 12 2 1 23 23 H 1.09004 * 109.46505 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47227 * 299.99766 * 1 2 3 25 25 H 1.09005 * 109.46957 * 60.00182 * 1 2 3 26 26 H 0.96998 * 120.00115 * 180.02562 * 7 6 4 27 27 H 1.08993 * 109.49250 * 63.22359 * 13 12 2 28 28 H 1.09002 * 109.51069 * 303.16298 * 13 12 2 29 29 H 1.09003 * 109.48578 * 181.63008 * 14 13 12 30 30 H 1.08995 * 109.49399 * 61.56588 * 14 13 12 31 31 H 1.08988 * 109.47580 * 315.83840 * 16 15 14 32 32 H 1.08997 * 109.46749 * 195.83317 * 16 15 14 33 33 H 1.09003 * 109.46966 * 59.99565 * 19 17 16 34 34 H 1.08997 * 109.47569 * 179.97438 * 19 17 16 35 35 H 1.09004 * 109.47056 * 299.99817 * 19 17 16 36 36 H 0.96699 * 113.99900 * 60.00789 * 20 17 16 37 37 H 1.09005 * 109.48544 * 60.64478 * 21 15 14 38 38 H 1.08993 * 109.48917 * 180.70864 * 21 15 14 39 39 H 1.08999 * 109.49327 * 296.78280 * 22 12 2 40 40 H 1.09003 * 109.48979 * 56.84590 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3226 -1.1193 -4.0080 9 1 1.3449 -2.1613 -4.4125 10 1 2.4873 -0.1399 -5.1120 11 1 3.6310 -1.7563 -3.7120 12 7 2.0197 -0.6926 1.1994 13 6 1.6485 0.0393 2.4185 14 6 2.2436 -0.6700 3.6372 15 7 1.7491 -2.0531 3.6855 16 6 2.2388 -2.7456 4.8850 17 6 1.4532 -2.2661 6.1072 18 1 1.5812 -1.1897 6.2220 19 6 1.9721 -2.9777 7.3583 20 8 0.0670 -2.5647 5.9297 21 6 2.1202 -2.7850 2.4664 22 6 1.5253 -2.0755 1.2478 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7081 1.1610 -3.4844 27 1 0.5628 0.0684 2.5089 28 1 2.0364 1.0566 2.3647 29 1 1.9454 -0.1453 4.5449 30 1 3.3308 -0.6751 3.5602 31 1 3.2972 -2.5263 5.0245 32 1 2.1032 -3.8204 4.7647 33 1 3.0294 -2.7499 7.4937 34 1 1.4127 -2.6358 8.2291 35 1 1.8441 -4.0541 7.2435 36 1 -0.1216 -3.5069 5.8210 37 1 3.2061 -2.8139 2.3761 38 1 1.7322 -3.8020 2.5206 39 1 0.4380 -2.0706 1.3248 40 1 1.8234 -2.6003 0.3401 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189297399.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:40 Heat of formation + Delta-G solvation = -63.770252 kcal Electronic energy + Delta-G solvation = -18522.499142 eV Core-core repulsion = 15757.201120 eV Total energy + Delta-G solvation = -2765.298022 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46330 -38.59856 -36.67503 -34.50825 -32.29060 -31.83115 -30.67758 -27.73645 -27.31158 -25.11872 -24.39831 -22.53061 -21.99829 -20.20794 -18.22369 -17.63061 -17.02814 -16.73220 -16.23988 -15.91824 -15.68718 -15.41830 -15.29835 -14.61220 -14.45387 -14.22025 -13.62175 -13.32466 -13.17143 -12.95652 -12.77252 -12.64520 -12.56976 -12.51598 -12.32327 -12.09084 -12.01983 -11.80702 -11.50073 -11.35679 -10.90960 -10.74502 -10.49299 -9.20766 -8.85296 -8.10309 -6.21717 1.43062 1.43618 1.54465 2.43393 2.89453 3.18703 3.37707 3.71873 3.83902 4.01749 4.20861 4.28395 4.35613 4.39715 4.45001 4.51409 4.62974 4.70167 4.71888 4.77675 4.87131 4.90113 4.92839 5.02684 5.07010 5.15411 5.21059 5.25265 5.31115 5.52491 5.70009 5.78274 6.08555 6.17864 6.20802 6.49613 6.74158 6.91624 7.02174 7.47570 8.96188 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.049335 B = 0.005116 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.415965 B = 5471.659312 C = 5683.024735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.215 3.785 3 H 0.004 0.996 4 C -0.514 4.514 5 H 0.057 0.943 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.961 3.039 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.541 5.541 13 C 0.054 3.946 14 C 0.071 3.929 15 N -0.540 5.540 16 C 0.025 3.975 17 C 0.109 3.891 18 H 0.083 0.917 19 C -0.175 4.175 20 O -0.573 6.573 21 C 0.069 3.931 22 C 0.068 3.932 23 H 0.028 0.972 24 H 0.020 0.980 25 H 0.061 0.939 26 H 0.261 0.739 27 H 0.023 0.977 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.383 0.617 37 H 0.033 0.967 38 H 0.092 0.908 39 H 0.020 0.980 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.577 -8.684 16.609 18.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.107 3.893 3 H 0.022 0.978 4 C -0.553 4.553 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.193 1.193 12 N -0.265 5.265 13 C -0.074 4.074 14 C -0.057 4.057 15 N -0.265 5.265 16 C -0.103 4.103 17 C 0.050 3.950 18 H 0.101 0.899 19 C -0.233 4.233 20 O -0.379 6.379 21 C -0.059 4.059 22 C -0.060 4.060 23 H 0.047 0.953 24 H 0.039 0.961 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.231 0.769 37 H 0.052 0.948 38 H 0.110 0.890 39 H 0.038 0.962 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.469 -7.926 16.531 18.498 hybrid contribution 0.167 -0.474 -1.258 1.354 sum 2.637 -8.400 15.273 17.629 Atomic orbital electron populations 1.22155 1.00490 0.98920 0.99689 1.19048 0.89896 0.92932 0.87391 0.97767 1.21353 1.30650 1.12444 0.90816 0.92434 1.25721 0.95372 0.95780 1.01923 1.70024 1.37904 1.24250 1.24015 0.85506 0.78824 0.78197 0.78788 1.20110 1.21004 1.19310 1.62425 1.59364 1.02551 1.02146 1.22100 0.97643 0.97291 0.90391 1.22076 0.96941 0.89465 0.97251 1.62061 1.60055 1.02130 1.02249 1.22929 0.97645 0.99439 0.90306 1.21876 0.81005 0.99775 0.92386 0.89918 1.22399 1.02229 1.01450 0.97259 1.86589 1.24714 1.31155 1.95461 1.22136 0.97890 0.97261 0.88641 1.21958 0.96537 0.89920 0.97619 0.95266 0.96069 0.92031 0.92983 0.95906 0.91664 0.89451 0.94573 0.93291 0.89321 0.90798 0.91762 0.91097 0.76905 0.94850 0.89026 0.96158 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.85 8.27 71.98 0.60 -7.25 16 2 C 0.21 11.30 2.35 44.17 0.10 11.40 16 3 H 0.00 0.26 8.11 -2.39 -0.02 0.24 16 4 C -0.51 -28.75 7.90 25.60 0.20 -28.55 16 5 H 0.06 3.19 6.77 -2.91 -0.02 3.17 16 6 C 0.01 0.58 5.30 84.66 0.45 1.03 16 7 N -0.92 -53.94 11.32 21.45 0.24 -53.69 16 8 Si 0.96 44.08 29.54 68.60 2.03 46.10 16 9 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 12 N -0.54 -24.06 4.69 -874.87 -4.10 -28.17 16 13 C 0.05 2.09 5.25 86.31 0.45 2.55 16 14 C 0.07 2.15 5.43 86.31 0.47 2.62 16 15 N -0.54 -15.39 4.52 -895.75 -4.05 -19.44 16 16 C 0.02 0.50 4.66 86.30 0.40 0.90 16 17 C 0.11 2.06 3.65 30.59 0.11 2.17 16 18 H 0.08 1.74 6.87 -2.39 -0.02 1.72 16 19 C -0.18 -2.24 9.53 71.98 0.69 -1.56 16 20 O -0.57 -12.94 13.21 -148.98 -1.97 -14.91 16 21 C 0.07 2.12 5.56 86.31 0.48 2.60 16 22 C 0.07 2.74 4.86 86.31 0.42 3.16 16 23 H 0.03 1.45 6.46 -2.38 -0.02 1.43 16 24 H 0.02 0.98 6.59 -2.39 -0.02 0.97 16 25 H 0.06 3.46 6.07 -2.38 -0.01 3.45 16 26 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.02 0.94 6.60 -2.39 -0.02 0.92 16 28 H 0.06 2.49 8.12 -2.39 -0.02 2.47 16 29 H 0.09 2.32 6.79 -2.39 -0.02 2.31 16 30 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 0.94 7.99 -2.39 -0.02 0.92 16 32 H 0.09 1.52 7.84 -2.39 -0.02 1.50 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.73 8.14 -2.38 -0.02 0.72 16 36 H 0.38 5.91 9.05 -74.06 -0.67 5.24 16 37 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.09 2.38 8.00 -2.39 -0.02 2.36 16 39 H 0.02 0.87 6.47 -2.39 -0.02 0.85 16 40 H 0.07 2.89 6.45 -2.39 -0.02 2.88 16 Total: -1.00 -64.25 304.55 -3.13 -67.38 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.34 Total: 13.66 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 4.37 Total: -10.94 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -7.91 Total: -101.30 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -1.97 Total: -14.91 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -64.25 -3.13 -67.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189297399.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.610 kcal (2) G-P(sol) polarization free energy of solvation -64.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds