Wall clock time and date at job start Mon Mar 30 2020 05:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47150 * 2 1 4 4 O 1.42895 * 109.47349 * 119.99916 * 2 1 3 5 5 C 1.53003 * 109.47383 * 240.00179 * 2 1 3 6 6 N 1.46896 * 109.47354 * 179.97438 * 5 2 1 7 7 C 1.46948 * 111.00183 * 190.00031 * 6 5 2 8 8 C 1.53049 * 109.36764 * 183.19149 * 7 6 5 9 9 N 1.46961 * 109.36177 * 301.59566 * 8 7 6 10 10 C 1.46896 * 111.00124 * 183.18463 * 9 8 7 11 11 C 1.52996 * 109.47256 * 170.00033 * 10 9 8 12 12 C 1.50702 * 109.47159 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.46956 * 110.87704 * 59.32220 * 9 8 7 21 21 C 1.46963 * 111.00029 * 313.80211 * 6 5 2 22 22 H 1.09003 * 109.47150 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47551 * 299.99982 * 1 2 3 24 24 H 1.09004 * 109.47393 * 59.99911 * 1 2 3 25 25 H 0.96701 * 113.99961 * 60.00010 * 4 2 1 26 26 H 1.09004 * 109.46930 * 59.99626 * 5 2 1 27 27 H 1.09003 * 109.46832 * 300.00016 * 5 2 1 28 28 H 1.08999 * 109.48998 * 63.22220 * 7 6 5 29 29 H 1.09002 * 109.48626 * 303.15745 * 7 6 5 30 30 H 1.09001 * 109.49268 * 181.63226 * 8 7 6 31 31 H 1.09000 * 109.49067 * 61.56179 * 8 7 6 32 32 H 1.09004 * 109.46774 * 50.00232 * 10 9 8 33 33 H 1.09000 * 109.47723 * 290.00621 * 10 9 8 34 34 H 1.09004 * 109.47066 * 60.00378 * 11 10 9 35 35 H 1.08994 * 109.47405 * 300.00209 * 11 10 9 36 36 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.49195 * 60.64478 * 20 9 8 38 38 H 1.09002 * 109.48564 * 180.71036 * 20 9 8 39 39 H 1.09000 * 109.48524 * 296.77653 * 21 6 5 40 40 H 1.09001 * 109.48867 * 56.84120 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2493 6 7 3.5090 -0.7207 -1.2496 7 6 4.0355 -1.1898 -2.5388 8 6 5.5634 -1.2501 -2.4713 9 7 6.0896 0.0825 -2.1444 10 6 7.5586 0.0830 -2.1446 11 6 8.0681 1.5225 -2.0493 12 6 9.5751 1.5231 -2.0501 13 1 10.1155 0.5901 -2.1128 14 6 10.2641 2.7152 -1.9772 15 7 9.6061 3.8514 -1.9012 16 14 12.1320 2.7163 -1.9860 17 1 12.6204 2.8062 -3.3855 18 1 12.6300 3.8820 -1.2123 19 1 12.6308 1.4620 -1.3672 20 6 5.5630 0.5516 -0.8551 21 6 4.0352 0.6120 -0.9225 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.7210 -1.5952 1.2329 26 1 1.6766 -0.2074 -2.1393 27 1 1.6767 -1.7489 -1.2493 28 1 3.7333 -0.5009 -3.3275 29 1 3.6415 -2.1834 -2.7526 30 1 5.9577 -1.5702 -3.4358 31 1 5.8657 -1.9596 -1.7009 32 1 7.9219 -0.3707 -3.0667 33 1 7.9223 -0.4884 -1.2906 34 1 7.7048 1.9763 -1.1272 35 1 7.7045 2.0939 -2.9032 36 1 10.0908 4.6900 -1.8495 37 1 5.8653 -0.1373 -0.0664 38 1 5.9571 1.5452 -0.6412 39 1 3.7329 1.3214 -1.6929 40 1 3.6409 0.9320 0.0420 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189345074.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:43 Heat of formation + Delta-G solvation = -47.488096 kcal Electronic energy + Delta-G solvation = -18010.477506 eV Core-core repulsion = 15245.885531 eV Total energy + Delta-G solvation = -2764.591975 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 3.54 seconds Orbital eigenvalues (eV) -39.39354 -37.52580 -35.11822 -32.95798 -31.46747 -30.62739 -29.74210 -27.16147 -24.68124 -23.65771 -23.19144 -21.22986 -20.26028 -19.35310 -16.83980 -16.39412 -16.02616 -15.48006 -14.88892 -14.63183 -14.54328 -14.33439 -13.81791 -13.73696 -13.37161 -12.69189 -12.58244 -12.39306 -12.09500 -11.75849 -11.64488 -11.34680 -11.03940 -10.96007 -10.89733 -10.66213 -10.46838 -10.41484 -9.99368 -9.76613 -9.29801 -9.08009 -8.30029 -8.23067 -7.65214 -5.96510 -3.98627 3.34446 3.40422 3.43896 3.82998 4.36003 4.41928 4.54056 4.60470 4.87939 4.95817 5.14368 5.25945 5.34168 5.37918 5.39467 5.49156 5.56632 5.65512 5.71070 5.76898 5.88417 5.90343 6.03014 6.17941 6.25457 6.39121 6.48436 6.56810 7.01338 7.07345 7.15006 7.56060 7.59041 7.63412 7.84382 7.94113 8.12103 8.47363 9.08584 9.64769 11.14937 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.045182 B = 0.004260 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.561825 B = 6570.556031 C = 6892.611937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.097 3.903 3 H 0.102 0.898 4 O -0.550 6.550 5 C 0.023 3.977 6 N -0.531 5.531 7 C 0.059 3.941 8 C 0.057 3.943 9 N -0.541 5.541 10 C 0.064 3.936 11 C 0.028 3.972 12 C -0.521 4.521 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.059 3.941 21 C 0.054 3.946 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.372 0.628 26 H 0.040 0.960 27 H 0.074 0.926 28 H 0.039 0.961 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.035 0.965 32 H 0.059 0.941 33 H 0.020 0.980 34 H 0.017 0.983 35 H 0.023 0.977 36 H 0.260 0.740 37 H 0.035 0.965 38 H 0.089 0.911 39 H 0.037 0.963 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.607 -9.667 1.696 20.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.038 3.962 3 H 0.119 0.881 4 O -0.354 6.354 5 C -0.105 4.105 6 N -0.256 5.256 7 C -0.069 4.069 8 C -0.072 4.072 9 N -0.266 5.266 10 C -0.063 4.063 11 C -0.009 4.009 12 C -0.560 4.560 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.070 4.070 21 C -0.074 4.074 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.219 0.781 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.038 0.962 34 H 0.035 0.965 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.107 0.893 39 H 0.056 0.944 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.296 -8.896 1.816 19.534 hybrid contribution 0.732 -0.463 -0.282 0.911 sum -16.564 -9.359 1.534 19.087 Atomic orbital electron populations 1.22486 0.96429 1.02482 1.02814 1.22036 0.92308 0.97190 0.84663 0.88066 1.86621 1.77262 1.28681 1.42879 1.22851 0.89057 1.00909 0.97683 1.62176 1.05891 1.26584 1.30953 1.22166 0.95453 0.99546 0.89755 1.22093 0.93453 0.91176 1.00494 1.62276 1.10104 1.23406 1.30839 1.22312 0.83442 1.01469 0.99072 1.19091 0.94882 0.89333 0.97622 1.21206 0.91785 0.92525 1.50499 0.92810 1.24993 0.98361 0.95625 0.95343 1.69976 1.35329 0.97437 1.50542 0.86595 0.85860 0.77538 0.78000 1.20681 1.21235 1.19920 1.22142 0.92892 1.01589 0.90349 1.22315 0.95646 0.88734 1.00660 0.92326 0.91600 0.91669 0.78143 0.94196 0.90764 0.94244 0.91097 0.90794 0.94715 0.92205 0.96162 0.96476 0.95832 0.93035 0.94629 0.89282 0.94427 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 9.53 37.15 0.35 -0.98 16 2 C 0.10 0.95 2.89 -26.73 -0.08 0.87 16 3 H 0.10 1.10 6.26 -51.93 -0.33 0.77 16 4 O -0.55 -6.09 13.01 -35.23 -0.46 -6.55 16 5 C 0.02 0.24 4.94 -3.82 -0.02 0.22 16 6 N -0.53 -7.16 4.73 -234.47 -1.11 -8.27 16 7 C 0.06 0.79 5.58 -3.77 -0.02 0.77 16 8 C 0.06 0.89 5.61 -3.77 -0.02 0.87 16 9 N -0.54 -10.39 4.71 -234.47 -1.10 -11.49 16 10 C 0.06 1.40 4.90 -3.83 -0.02 1.38 16 11 C 0.03 0.75 4.91 -27.88 -0.14 0.61 16 12 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 13 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -27.23 13.29 55.43 0.74 -26.50 16 16 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 C 0.06 1.07 5.41 -3.77 -0.02 1.05 16 21 C 0.05 0.82 4.93 -3.76 -0.02 0.80 16 22 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.37 2.84 9.05 45.56 0.41 3.25 16 26 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 1.29 8.03 -51.93 -0.42 0.87 16 33 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 34 H 0.02 0.48 6.49 -51.93 -0.34 0.14 16 35 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.79 6.34 -51.93 -0.33 1.46 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.08 1.21 5.84 -51.93 -0.30 0.91 16 LS Contribution 313.59 15.07 4.73 4.73 Total: -1.00 -31.67 313.59 -8.95 -40.62 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.33 Total: -1.29 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -0.39 Total: -8.17 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -1.48 Total: -46.26 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.46 Total: -6.55 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.67 -8.95 -40.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189345074.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.871 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.54 seconds