Wall clock time and date at job start Mon Mar 30 2020 04:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99906 * 2 1 4 4 C 1.52995 * 109.46828 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47472 * 64.99696 * 4 3 2 6 6 C 1.46958 * 110.99950 * 66.04456 * 5 4 3 7 7 C 1.53052 * 109.36392 * 183.18728 * 6 5 4 8 8 H 1.09002 * 109.49084 * 61.56897 * 7 6 5 9 9 C 1.50698 * 109.48766 * 181.63443 * 7 6 5 10 10 H 1.07995 * 120.00333 * 84.91648 * 9 7 6 11 11 C 1.37876 * 119.99781 * 264.91247 * 9 7 6 12 12 N 1.31518 * 120.00140 * 5.63945 * 11 9 7 13 13 Si 1.86800 * 120.00176 * 185.63577 * 11 9 7 14 14 H 1.48494 * 109.47387 * 90.00207 * 13 11 9 15 15 H 1.48498 * 109.47210 * 210.00502 * 13 11 9 16 16 H 1.48504 * 109.47140 * 330.00214 * 13 11 9 17 17 N 1.46961 * 109.36768 * 301.59882 * 7 6 5 18 18 C 1.46898 * 110.99934 * 183.18529 * 17 7 6 19 19 C 1.46962 * 110.87378 * 59.32011 * 17 7 6 20 20 C 1.46961 * 111.00232 * 189.84371 * 5 4 3 21 21 H 1.09002 * 109.48533 * 56.84381 * 20 5 4 22 22 C 1.52999 * 109.48951 * 296.80371 * 20 5 4 23 23 H 1.09004 * 109.47425 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47333 * 300.00468 * 1 2 3 25 25 H 1.08998 * 109.47299 * 60.00053 * 1 2 3 26 26 H 1.08993 * 109.47622 * 59.99771 * 3 2 1 27 27 H 1.09001 * 109.46960 * 299.99372 * 3 2 1 28 28 H 1.09001 * 109.47237 * 304.99087 * 4 3 2 29 29 H 1.09008 * 109.47284 * 184.99600 * 4 3 2 30 30 H 1.08997 * 109.48551 * 63.22360 * 6 5 4 31 31 H 1.08996 * 109.49089 * 303.15969 * 6 5 4 32 32 H 0.96996 * 120.00210 * 179.97438 * 12 11 9 33 33 H 1.09000 * 109.46796 * 65.60607 * 18 17 7 34 34 H 1.09002 * 109.46643 * 185.60605 * 18 17 7 35 35 H 1.08995 * 109.47610 * 305.60253 * 18 17 7 36 36 H 1.09003 * 109.49044 * 60.65443 * 19 17 7 37 37 H 1.09003 * 109.48417 * 180.71363 * 19 17 7 38 38 H 1.09001 * 109.47081 * 59.99407 * 22 20 5 39 39 H 1.09004 * 109.46945 * 179.97438 * 22 20 5 40 40 H 1.09003 * 109.47044 * 299.99432 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9768 0.5626 -1.2561 6 6 3.6948 1.4358 -2.4040 7 6 4.0956 0.7203 -3.6963 8 1 3.5052 -0.1893 -3.8066 9 6 3.8450 1.6286 -4.8724 10 1 4.5906 2.3536 -5.1633 11 6 2.6636 1.5340 -5.5769 12 7 1.7105 0.7306 -5.1578 13 14 2.4168 2.5471 -7.1268 14 1 2.8914 1.7755 -8.3034 15 1 0.9742 2.8600 -7.2892 16 1 3.1884 3.8114 -7.0200 17 7 5.5228 0.3745 -3.6394 18 6 5.9642 -0.2476 -4.8949 19 6 5.8047 -0.4987 -2.4914 20 6 5.4040 0.2168 -1.1992 21 1 5.5854 -0.4401 -0.3485 22 6 6.2328 1.4935 -1.0439 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6886 1.8465 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 3.8514 0.5683 0.8410 29 1 3.9785 2.1765 0.0889 30 1 4.2659 2.3591 -2.3075 31 1 2.6301 1.6675 -2.4318 32 1 0.8792 0.6643 -5.6533 33 1 5.8988 0.4803 -5.7036 34 1 6.9960 -0.5834 -4.7908 35 1 5.3255 -1.1011 -5.1217 36 1 5.2337 -1.4221 -2.5880 37 1 6.8695 -0.7303 -2.4636 38 1 5.9457 2.0035 -0.1243 39 1 7.2913 1.2366 -1.0013 40 1 6.0519 2.1499 -1.8951 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220551983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:09 Heat of formation + Delta-G solvation = -28.503279 kcal Electronic energy + Delta-G solvation = -19116.038361 eV Core-core repulsion = 16352.269629 eV Total energy + Delta-G solvation = -2763.768732 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.00586 -37.24625 -34.81925 -32.84546 -31.09998 -29.49401 -27.12719 -26.44361 -25.49450 -24.66129 -22.95069 -21.39069 -20.58482 -17.74803 -16.50487 -16.07038 -15.87334 -15.06589 -14.79441 -14.56979 -13.96645 -13.85724 -13.40783 -13.28801 -13.04806 -12.38276 -12.21533 -11.79933 -11.52772 -11.44502 -11.23614 -11.07840 -10.97727 -10.84471 -10.74088 -10.48452 -10.31053 -10.09339 -9.71779 -9.51976 -9.16259 -8.97624 -8.46188 -7.43939 -7.00489 -6.02521 -4.08094 3.29103 3.36341 3.39679 4.22749 4.39584 4.61745 5.10952 5.33908 5.45285 5.48115 5.58753 5.68331 5.73609 5.75310 5.86967 5.88537 5.95836 6.02903 6.14257 6.20058 6.29355 6.34701 6.42018 6.54161 6.58307 6.64465 6.80915 6.96423 7.02673 7.33027 7.58010 7.68499 7.82526 7.86626 8.00120 8.15413 8.33108 8.69974 9.09120 9.58364 11.04429 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.017511 B = 0.009850 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.648800 B = 2842.058146 C = 3942.539790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.066 3.934 4 C 0.058 3.942 5 N -0.528 5.528 6 C 0.074 3.926 7 C 0.211 3.789 8 H 0.037 0.963 9 C -0.507 4.507 10 H 0.060 0.940 11 C 0.065 3.935 12 N -0.885 5.885 13 Si 0.891 3.109 14 H -0.280 1.280 15 H -0.288 1.288 16 H -0.273 1.273 17 N -0.544 5.544 18 C 0.049 3.951 19 C 0.062 3.938 20 C 0.088 3.912 21 H 0.069 0.931 22 C -0.175 4.175 23 H 0.080 0.920 24 H 0.030 0.970 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.023 0.977 31 H 0.071 0.929 32 H 0.261 0.739 33 H 0.071 0.929 34 H 0.037 0.963 35 H 0.013 0.987 36 H 0.028 0.972 37 H 0.059 0.941 38 H 0.039 0.961 39 H 0.049 0.951 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.489 0.094 8.887 9.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.290 6.290 3 C -0.011 4.011 4 C -0.070 4.070 5 N -0.252 5.252 6 C -0.053 4.053 7 C 0.105 3.895 8 H 0.055 0.945 9 C -0.546 4.546 10 H 0.078 0.922 11 C -0.138 4.138 12 N -0.522 5.522 13 Si 0.719 3.281 14 H -0.206 1.206 15 H -0.214 1.214 16 H -0.198 1.198 17 N -0.269 5.269 18 C -0.100 4.100 19 C -0.067 4.067 20 C -0.021 4.021 21 H 0.087 0.913 22 C -0.234 4.234 23 H 0.098 0.902 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.041 0.959 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.031 0.969 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.392 -0.141 8.844 9.163 hybrid contribution -0.522 0.771 -0.824 1.243 sum 1.870 0.630 8.020 8.259 Atomic orbital electron populations 1.22664 0.82204 1.02185 0.99329 1.87983 1.18497 1.27345 1.95166 1.22588 0.93878 0.85148 0.99510 1.22032 0.93281 0.97721 0.94015 1.62477 1.15532 1.44765 1.02424 1.22481 1.00079 0.93447 0.89324 1.19386 0.82074 0.96374 0.91654 0.94537 1.21003 1.02010 1.19095 1.12491 0.92168 1.25018 0.96029 0.95348 0.97419 1.69998 1.05604 1.37660 1.38973 0.86613 0.77170 0.80616 0.83711 1.20645 1.21357 1.19806 1.62342 1.22851 1.40485 1.01241 1.22000 0.96665 0.97767 0.93529 1.22034 0.98564 0.94611 0.91472 1.21639 0.87525 0.95739 0.97206 0.91335 1.22332 0.99666 0.99894 1.01477 0.90177 0.95174 0.93963 0.94169 0.92600 0.91144 0.93975 0.95890 0.91043 0.92925 0.91001 0.94438 0.96852 0.95332 0.92281 0.94147 0.93201 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.37 -6.86 10.65 -35.23 -0.38 -7.23 16 3 C 0.07 1.10 6.00 37.15 0.22 1.33 16 4 C 0.06 0.98 4.73 -3.83 -0.02 0.96 16 5 N -0.53 -10.65 4.61 -226.49 -1.04 -11.70 16 6 C 0.07 1.71 4.30 -3.77 -0.02 1.69 16 7 C 0.21 5.36 2.02 -68.80 -0.14 5.22 16 8 H 0.04 1.09 7.39 -51.93 -0.38 0.70 16 9 C -0.51 -13.74 7.05 -34.44 -0.24 -13.99 16 10 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 11 C 0.06 1.78 5.45 -17.82 -0.10 1.68 16 12 N -0.88 -25.45 12.85 55.43 0.71 -24.73 16 13 Si 0.89 21.12 29.54 -169.99 -5.02 16.09 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 17 N -0.54 -12.08 4.09 -236.12 -0.97 -13.04 16 18 C 0.05 1.03 9.19 60.06 0.55 1.58 16 19 C 0.06 1.21 5.04 -3.77 -0.02 1.19 16 20 C 0.09 1.59 2.95 -67.66 -0.20 1.39 16 21 H 0.07 1.13 8.07 -51.93 -0.42 0.71 16 22 C -0.17 -2.89 8.37 37.16 0.31 -2.58 16 23 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 1.03 6.27 -51.93 -0.33 0.71 16 28 H 0.07 1.10 8.03 -51.93 -0.42 0.69 16 29 H 0.04 0.67 6.90 -51.92 -0.36 0.31 16 30 H 0.02 0.53 6.35 -51.93 -0.33 0.20 16 31 H 0.07 1.80 6.24 -51.93 -0.32 1.48 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.07 1.57 7.22 -51.93 -0.38 1.20 16 34 H 0.04 0.66 8.04 -51.93 -0.42 0.25 16 35 H 0.01 0.29 8.13 -51.93 -0.42 -0.14 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.04 0.60 6.70 -51.93 -0.35 0.26 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 1.48 5.95 -51.93 -0.31 1.17 16 LS Contribution 307.52 15.07 4.63 4.63 Total: -1.00 -29.33 307.52 -7.52 -36.86 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.93 Total: -0.96 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 1.47 Total: 0.08 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -1.30 Total: -49.48 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.38 Total: -7.23 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.33 -7.52 -36.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220551983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.355 kcal (2) G-P(sol) polarization free energy of solvation -29.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds