Wall clock time and date at job start Mon Mar 30 2020 04:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99906 * 2 1 4 4 C 1.52995 * 109.46828 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47472 * 64.99696 * 4 3 2 6 6 C 1.46958 * 110.99950 * 66.04456 * 5 4 3 7 7 C 1.53052 * 109.36392 * 183.18728 * 6 5 4 8 8 H 1.09002 * 109.49084 * 61.56897 * 7 6 5 9 9 C 1.50698 * 109.48766 * 181.63443 * 7 6 5 10 10 H 1.07995 * 120.00333 * 84.91648 * 9 7 6 11 11 C 1.37876 * 119.99781 * 264.91247 * 9 7 6 12 12 N 1.31518 * 120.00140 * 5.63945 * 11 9 7 13 13 Si 1.86800 * 120.00176 * 185.63577 * 11 9 7 14 14 H 1.48494 * 109.47387 * 90.00207 * 13 11 9 15 15 H 1.48498 * 109.47210 * 210.00502 * 13 11 9 16 16 H 1.48504 * 109.47140 * 330.00214 * 13 11 9 17 17 N 1.46961 * 109.36768 * 301.59882 * 7 6 5 18 18 C 1.46898 * 110.99934 * 183.18529 * 17 7 6 19 19 C 1.46962 * 110.87378 * 59.32011 * 17 7 6 20 20 C 1.46961 * 111.00232 * 189.84371 * 5 4 3 21 21 H 1.09002 * 109.48533 * 56.84381 * 20 5 4 22 22 C 1.52999 * 109.48951 * 296.80371 * 20 5 4 23 23 H 1.09004 * 109.47425 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47333 * 300.00468 * 1 2 3 25 25 H 1.08998 * 109.47299 * 60.00053 * 1 2 3 26 26 H 1.08993 * 109.47622 * 59.99771 * 3 2 1 27 27 H 1.09001 * 109.46960 * 299.99372 * 3 2 1 28 28 H 1.09001 * 109.47237 * 304.99087 * 4 3 2 29 29 H 1.09008 * 109.47284 * 184.99600 * 4 3 2 30 30 H 1.08997 * 109.48551 * 63.22360 * 6 5 4 31 31 H 1.08996 * 109.49089 * 303.15969 * 6 5 4 32 32 H 0.96996 * 120.00210 * 179.97438 * 12 11 9 33 33 H 1.09000 * 109.46796 * 65.60607 * 18 17 7 34 34 H 1.09002 * 109.46643 * 185.60605 * 18 17 7 35 35 H 1.08995 * 109.47610 * 305.60253 * 18 17 7 36 36 H 1.09003 * 109.49044 * 60.65443 * 19 17 7 37 37 H 1.09003 * 109.48417 * 180.71363 * 19 17 7 38 38 H 1.09001 * 109.47081 * 59.99407 * 22 20 5 39 39 H 1.09004 * 109.46945 * 179.97438 * 22 20 5 40 40 H 1.09003 * 109.47044 * 299.99432 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9768 0.5626 -1.2561 6 6 3.6948 1.4358 -2.4040 7 6 4.0956 0.7203 -3.6963 8 1 3.5052 -0.1893 -3.8066 9 6 3.8450 1.6286 -4.8724 10 1 4.5906 2.3536 -5.1633 11 6 2.6636 1.5340 -5.5769 12 7 1.7105 0.7306 -5.1578 13 14 2.4168 2.5471 -7.1268 14 1 2.8914 1.7755 -8.3034 15 1 0.9742 2.8600 -7.2892 16 1 3.1884 3.8114 -7.0200 17 7 5.5228 0.3745 -3.6394 18 6 5.9642 -0.2476 -4.8949 19 6 5.8047 -0.4987 -2.4914 20 6 5.4040 0.2168 -1.1992 21 1 5.5854 -0.4401 -0.3485 22 6 6.2328 1.4935 -1.0439 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6886 1.8465 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 3.8514 0.5683 0.8410 29 1 3.9785 2.1765 0.0889 30 1 4.2659 2.3591 -2.3075 31 1 2.6301 1.6675 -2.4318 32 1 0.8792 0.6643 -5.6533 33 1 5.8988 0.4803 -5.7036 34 1 6.9960 -0.5834 -4.7908 35 1 5.3255 -1.1011 -5.1217 36 1 5.2337 -1.4221 -2.5880 37 1 6.8695 -0.7303 -2.4636 38 1 5.9457 2.0035 -0.1243 39 1 7.2913 1.2366 -1.0013 40 1 6.0519 2.1499 -1.8951 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220551983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:09 Heat of formation + Delta-G solvation = -50.362192 kcal Electronic energy + Delta-G solvation = -19116.986234 eV Core-core repulsion = 16352.269629 eV Total energy + Delta-G solvation = -2764.716605 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.61072 -38.63152 -36.48326 -34.81479 -32.70055 -31.16535 -28.70431 -27.97634 -26.85836 -26.51241 -24.62412 -23.01966 -22.20082 -19.41330 -18.54572 -17.51947 -17.33723 -16.73866 -16.27838 -16.16162 -15.61240 -15.46285 -15.08500 -14.86617 -14.63566 -13.98956 -13.69902 -13.57276 -13.09291 -12.89858 -12.77911 -12.74164 -12.58703 -12.44564 -12.29037 -12.19867 -11.91176 -11.72725 -11.63436 -11.17498 -10.93956 -10.55140 -10.47571 -9.02870 -8.82842 -8.13388 -6.26053 1.39818 1.40726 1.51437 2.40305 2.94771 3.06351 3.23314 3.51804 4.05701 4.11851 4.30071 4.34356 4.42163 4.47626 4.51230 4.56717 4.64218 4.66025 4.73004 4.74863 4.82191 4.85238 4.87472 4.93692 4.99814 5.09050 5.14903 5.21649 5.40062 5.59999 5.60581 5.73770 6.09087 6.24708 6.34404 6.42152 6.53558 6.80787 6.97698 7.44485 8.93507 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.017511 B = 0.009850 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.648800 B = 2842.058146 C = 3942.539790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.401 6.401 3 C 0.065 3.935 4 C 0.058 3.942 5 N -0.547 5.547 6 C 0.096 3.904 7 C 0.219 3.781 8 H -0.016 1.016 9 C -0.516 4.516 10 H 0.054 0.946 11 C 0.016 3.984 12 N -0.920 5.920 13 Si 0.956 3.044 14 H -0.275 1.275 15 H -0.284 1.284 16 H -0.265 1.265 17 N -0.545 5.545 18 C 0.052 3.948 19 C 0.060 3.940 20 C 0.085 3.915 21 H 0.095 0.905 22 C -0.163 4.163 23 H 0.091 0.909 24 H 0.060 0.940 25 H 0.025 0.975 26 H 0.076 0.924 27 H 0.027 0.973 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.021 0.979 31 H 0.039 0.961 32 H 0.261 0.739 33 H 0.057 0.943 34 H 0.076 0.924 35 H -0.007 1.007 36 H 0.007 0.993 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 0.657 10.252 10.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.320 6.320 3 C -0.012 4.012 4 C -0.069 4.069 5 N -0.272 5.272 6 C -0.033 4.033 7 C 0.112 3.888 8 H 0.001 0.999 9 C -0.556 4.556 10 H 0.073 0.927 11 C -0.184 4.184 12 N -0.559 5.559 13 Si 0.781 3.219 14 H -0.201 1.201 15 H -0.210 1.210 16 H -0.190 1.190 17 N -0.270 5.270 18 C -0.097 4.097 19 C -0.069 4.069 20 C -0.024 4.024 21 H 0.113 0.887 22 C -0.222 4.222 23 H 0.110 0.890 24 H 0.079 0.921 25 H 0.043 0.957 26 H 0.094 0.906 27 H 0.045 0.955 28 H 0.109 0.891 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.011 0.989 36 H 0.025 0.975 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.799 0.425 10.222 10.913 hybrid contribution -0.923 0.532 -1.189 1.597 sum 2.876 0.958 9.033 9.528 Atomic orbital electron populations 1.22809 0.80648 1.03235 0.99956 1.87925 1.20391 1.28382 1.95339 1.22653 0.94016 0.84715 0.99801 1.22145 0.93324 0.98707 0.92751 1.62368 1.17419 1.44558 1.02851 1.21971 0.97885 0.93445 0.89952 1.19121 0.83259 0.93940 0.92504 0.99859 1.21225 1.01867 1.19112 1.13347 0.92729 1.25777 0.95696 0.96489 1.00395 1.70141 1.06063 1.39399 1.40331 0.85595 0.77145 0.79289 0.79869 1.20102 1.21022 1.18956 1.62314 1.20343 1.41650 1.02663 1.22007 0.98400 0.96466 0.92790 1.22200 1.00199 0.93363 0.91128 1.21785 0.86453 0.96939 0.97187 0.88690 1.22196 1.00682 0.98315 1.01017 0.89042 0.92106 0.95664 0.90579 0.95466 0.89056 0.92437 0.96100 0.94213 0.93014 0.92461 0.90535 0.98885 0.97453 0.88963 0.92293 0.90989 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.40 -14.65 10.65 -148.98 -1.59 -16.23 16 3 C 0.06 2.13 6.00 71.98 0.43 2.56 16 4 C 0.06 1.86 4.73 86.30 0.41 2.27 16 5 N -0.55 -21.83 4.61 -870.50 -4.01 -25.84 16 6 C 0.10 4.54 4.30 86.31 0.37 4.91 16 7 C 0.22 11.51 2.02 44.17 0.09 11.60 16 8 H -0.02 -1.03 7.39 -2.39 -0.02 -1.05 16 9 C -0.52 -28.86 7.05 25.60 0.18 -28.68 16 10 H 0.05 3.05 7.82 -2.91 -0.02 3.03 16 11 C 0.02 0.91 5.45 84.65 0.46 1.37 16 12 N -0.92 -55.17 12.85 21.45 0.28 -54.89 16 13 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 14 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 15 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 17 N -0.54 -24.20 4.09 -900.95 -3.69 -27.89 16 18 C 0.05 2.17 9.19 127.69 1.17 3.34 16 19 C 0.06 2.24 5.04 86.31 0.43 2.68 16 20 C 0.08 2.88 2.95 44.92 0.13 3.01 16 21 H 0.10 2.78 8.07 -2.39 -0.02 2.76 16 22 C -0.16 -4.91 8.37 71.98 0.60 -4.31 16 23 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 24 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.03 1.04 6.27 -2.39 -0.01 1.02 16 28 H 0.09 2.56 8.03 -2.39 -0.02 2.54 16 29 H 0.06 1.67 6.90 -2.38 -0.02 1.65 16 30 H 0.02 0.99 6.35 -2.39 -0.02 0.97 16 31 H 0.04 2.11 6.24 -2.39 -0.01 2.09 16 32 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 33 H 0.06 2.53 7.22 -2.39 -0.02 2.51 16 34 H 0.08 2.57 8.04 -2.39 -0.02 2.55 16 35 H -0.01 -0.34 8.13 -2.39 -0.02 -0.36 16 36 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.09 2.85 8.08 -2.39 -0.02 2.83 16 38 H 0.06 1.55 6.70 -2.39 -0.02 1.53 16 39 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.05 1.71 5.95 -2.39 -0.01 1.70 16 Total: -1.00 -66.03 307.52 -0.46 -66.49 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.99 Total: 11.33 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 5.53 Total: 0.87 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -7.42 Total: -108.62 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -1.59 Total: -16.23 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -66.03 -0.46 -66.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220551983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.126 kcal (2) G-P(sol) polarization free energy of solvation -66.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds